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Moc07g05740 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g05740
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr7:4818574..4829746
RNA-Seq ExpressionMoc07g05740
SyntenyMoc07g05740
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]3.4e-1654Show/hide
Query:  NGGGHLPLKTLAILPSLELALYASVKYSSQLNDLQLLHGNHNELAGRTTLDKVAAMVLQVPELIDDFEIIVITARYRILGLDENSLALVASDYYDCKRII
        +G  HLPLKTLAI+PSLELALYA VKYSSQLNDLQLLHGNH+E A                         V+    RILG +E+SL LV SDYYDC+ ++
Subjt:  NGGGHLPLKTLAILPSLELALYASVKYSSQLNDLQLLHGNHNELAGRTTLDKVAAMVLQVPELIDDFEIIVITARYRILGLDENSLALVASDYYDCKRII
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]3.8e-2874.49Show/hide
Query:  HLPLKTLAILPSLELALYASVKYSSQLNDLQLLHGNHNELAGRTTLDKVAAMVLQVPELIDDFEIIVITARYRILGLDENSLALVASDYYDCKRIIAP
        HLPLKTLAILPSLELA+YA VKYSSQLNDLQLL GNH+ LAGRTT DKV A+ L+V ELID  EII IT + RILG D +SLALVASDYYD +   AP
Subjt:  HLPLKTLAILPSLELALYASVKYSSQLNDLQLLHGNHNELAGRTTLDKVAAMVLQVPELIDDFEIIVITARYRILGLDENSLALVASDYYDCKRIIAP
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like1.6e-1654Show/hide
Query:  NGGGHLPLKTLAILPSLELALYASVKYSSQLNDLQLLHGNHNELAGRTTLDKVAAMVLQVPELIDDFEIIVITARYRILGLDENSLALVASDYYDCKRII
        +G  HLPLKTLAI+PSLELALYA VKYSSQLNDLQLLHGNH+E A                         V+    RILG +E+SL LV SDYYDC+ ++
Subjt:  NGGGHLPLKTLAILPSLELALYASVKYSSQLNDLQLLHGNHNELAGRTTLDKVAAMVLQVPELIDDFEIIVITARYRILGLDENSLALVASDYYDCKRII
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein1.8e-2874.49Show/hide
Query:  HLPLKTLAILPSLELALYASVKYSSQLNDLQLLHGNHNELAGRTTLDKVAAMVLQVPELIDDFEIIVITARYRILGLDENSLALVASDYYDCKRIIAP
        HLPLKTLAILPSLELA+YA VKYSSQLNDLQLL GNH+ LAGRTT DKV A+ L+V ELID  EII IT + RILG D +SLALVASDYYD +   AP
Subjt:  HLPLKTLAILPSLELALYASVKYSSQLNDLQLLHGNHNELAGRTTLDKVAAMVLQVPELIDDFEIIVITARYRILGLDENSLALVASDYYDCKRIIAP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAAGAAGTTTAAAGGACAAGAGCTTGAACGGAGAAGAAGCCAATATCGACGAGGGCTTTTGACTAAGGTTATGCTGAACGCACGCACTAAGCGTGGTCCTAA
AACGCTGGTGGATCACCCATTTCCAACTCCTTTGACTGACCAAATCATGCTCAAACTGATAGTGGAACACTTCTTCTACACGTATGCATCGGTTGGAACCACCAAAACGC
ATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGGATTTCTGCAGCCTACCAGGCGCCTGACGCCTCCAATGAAGGTACCTGTGCATGTGAGACGTCGG
TCGGTCCTAGAAAAGGTCGTACGGCGTGAGGAGTTAATGATTGGAATGCCCAGAGATCATAAGGGATGGGATAAGAATGGAGGTGGTCATCTTCCTTTGAAAACTTTAGC
CATCCTGCCTTCATTAGAACTTGCACTTTATGCTTCAGTGAAGTACAGTTCTCAATTGAATGACCTACAGCTCCTGCATGGTAACCACAACGAACTTGCAGGTCGTACCA
CTTTGGATAAGGTGGCTGCAATGGTTCTACAGGTACCGGAGCTAATAGATGACTTTGAAATAATTGTGATAACAGCTCGGTATAGGATATTGGGATTGGATGAAAACTCT
CTTGCTTTAGTTGCCTCCGATTATTATGATTGTAAGAGGATAATTGCCCCCAAATCTTCCATATGCTTTGGCAGTATGGTCGACTTGAGTGGAGAATTTCATGTACCTGC
ACGGGAACCGCAATTCCATGAAGGTCACACTACTCAGTCTCCGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGAAGAAGTTTAAAGGACAAGAGCTTGAACGGAGAAGAAGCCAATATCGACGAGGGCTTTTGACTAAGGTTATGCTGAACGCACGCACTAAGCGTGGTCCTAA
AACGCTGGTGGATCACCCATTTCCAACTCCTTTGACTGACCAAATCATGCTCAAACTGATAGTGGAACACTTCTTCTACACGTATGCATCGGTTGGAACCACCAAAACGC
ATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGGATTTCTGCAGCCTACCAGGCGCCTGACGCCTCCAATGAAGGTACCTGTGCATGTGAGACGTCGG
TCGGTCCTAGAAAAGGTCGTACGGCGTGAGGAGTTAATGATTGGAATGCCCAGAGATCATAAGGGATGGGATAAGAATGGAGGTGGTCATCTTCCTTTGAAAACTTTAGC
CATCCTGCCTTCATTAGAACTTGCACTTTATGCTTCAGTGAAGTACAGTTCTCAATTGAATGACCTACAGCTCCTGCATGGTAACCACAACGAACTTGCAGGTCGTACCA
CTTTGGATAAGGTGGCTGCAATGGTTCTACAGGTACCGGAGCTAATAGATGACTTTGAAATAATTGTGATAACAGCTCGGTATAGGATATTGGGATTGGATGAAAACTCT
CTTGCTTTAGTTGCCTCCGATTATTATGATTGTAAGAGGATAATTGCCCCCAAATCTTCCATATGCTTTGGCAGTATGGTCGACTTGAGTGGAGAATTTCATGTACCTGC
ACGGGAACCGCAATTCCATGAAGGTCACACTACTCAGTCTCCGATCTAA
Protein sequenceShow/hide protein sequence
MEKKKFKGQELERRRSQYRRGLLTKVMLNARTKRGPKTLVDHPFPTPLTDQIMLKLIVEHFFYTYASVGTTKTHWKTRFIKGKVGRKPGFLQPTRRLTPPMKVPVHVRRR
SVLEKVVRREELMIGMPRDHKGWDKNGGGHLPLKTLAILPSLELALYASVKYSSQLNDLQLLHGNHNELAGRTTLDKVAAMVLQVPELIDDFEIIVITARYRILGLDENS
LALVASDYYDCKRIIAPKSSICFGSMVDLSGEFHVPAREPQFHEGHTTQSPI