; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc07g05830 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g05830
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description30S ribosomal protein S12, chloroplastic
Genome locationchr7:4873078..4873727
RNA-Seq ExpressionMoc07g05830
SyntenyMoc07g05830
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1876942.1 hypothetical protein Lal_00033867 [Lupinus albus]1.1e-3488.04Show/hide
Query:  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        +ENVT+LVLVTLRDG+EEG RFSNEEKDP T KELN+E YEVKISC VL SGSKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

RWR98012.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]1.9e-3489.13Show/hide
Query:  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        +ENVTELVLVTLRDG+EEGRRFSNEEKDP T KELNEEPYEVKISC   +S SKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]7.6e-3994.62Show/hide
Query:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        MNENVTELV VTLRDGMEEGRRFSNEEKDP T KELNEEPYEVKISC VLSSGSKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]8.7e-3589.25Show/hide
Query:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        MNENVT+LV VTLRDGMEEGRRFSNEEKDP T KELNEEPYEVKIS  VLSSGSKGDLSVNFSTITPK  NSAL KVARVRLTSGFEI AYIP
Subjt:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]3.8e-3893.55Show/hide
Query:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        MNENVTELVLVTLRDGMEEGRRFSNEEKDP T KELNEEPYEVKIS  VLSSGSKGDLS+NFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

TrEMBL top hitse value%identityAlignment
A0A3S3NSS0 30S ribosomal protein S12, chloroplastic9.4e-3589.13Show/hide
Query:  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        +ENVTELVLVTLRDG+EEGRRFSNEEKDP T KELNEEPYEVKISC   +S SKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

A0A443Q5G0 30S ribosomal protein S12, chloroplastic9.4e-3589.13Show/hide
Query:  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        +ENVTELVLVTLRDG+EEGRRFSNEEKDP T KELNEEPYEVKISC   +S SKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

A0A6A5N1Q8 Uncharacterized protein5.5e-3588.04Show/hide
Query:  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        +ENVT+LVLVTLRDG+EEG RFSNEEKDP T KELN+E YEVKISC VL SGSKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  NENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

A0A6J1F0L1 uncharacterized protein LOC1114383943.7e-3994.62Show/hide
Query:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        MNENVTELV VTLRDGMEEGRRFSNEEKDP T KELNEEPYEVKISC VLSSGSKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

A0A6P6GKJ1 uncharacterized protein LOC1124887682.6e-3278.49Show/hide
Query:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        MNENVTELVLVTL++G+EEG+RFSNEE D  T KELNEEPYE+KISCMVL +G KGDLS+NFS I PKKPNSAL KVARVRLT GFE+T +IP
Subjt:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic1.2e-1587.5Show/hide
Query:  SCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        +C  + SGSKGDLSVNFSTITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  SCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

A4GYT5 30S ribosomal protein S12-A, chloroplastic3.2e-0896.67Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIP
        TITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIP

A4QJV5 30S ribosomal protein S12-A, chloroplastic3.2e-0896.67Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIP
        TITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIP

A4QJX7 30S ribosomal protein S12-B, chloroplastic3.8e-0979.49Show/hide
Query:  KGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP
        +G  +  +STITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  KGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIP

Q3V510 30S ribosomal protein S12, chloroplastic3.2e-0896.67Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIP
        TITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIP

Arabidopsis top hitse value%identityAlignment
ATCG00065.1 ribosomal protein S12A2.3e-0996.67Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIP
        TITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIP

ATCG00905.1 ribosomal protein S12C2.3e-0996.67Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIP
        TITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIP

ATCG01230.1 ribosomal protein S12B2.3e-0996.67Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIP
        TITPKKPNSAL KVARVRLTSGFEITAYIP
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAAACGTGACTGAATTGGTCCTGGTCACTCTTCGAGATGGCATGGAAGAAGGAAGGAGATTCTCGAACGAGGAAAAAGATCCAACGACTTTGAAAGAATTGAA
CGAGGAGCCGTATGAGGTGAAAATCTCATGTATGGTCCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTTAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCTT
TAGGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGAAGCTGAAAGTTGGTTCACGCGGGCACAAACGAGCACCGAATGCAACAAC
AGGGAACTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAAACGTGACTGAATTGGTCCTGGTCACTCTTCGAGATGGCATGGAAGAAGGAAGGAGATTCTCGAACGAGGAAAAAGATCCAACGACTTTGAAAGAATTGAA
CGAGGAGCCGTATGAGGTGAAAATCTCATGTATGGTCCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTTAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCTT
TAGGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGAAGCTGAAAGTTGGTTCACGCGGGCACAAACGAGCACCGAATGCAACAAC
AGGGAACTGTGA
Protein sequenceShow/hide protein sequence
MNENVTELVLVTLRDGMEEGRRFSNEEKDPTTLKELNEEPYEVKISCMVLSSGSKGDLSVNFSTITPKKPNSALGKVARVRLTSGFEITAYIPEAESWFTRAQTSTECNN
REL