; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc07g05950 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g05950
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr7:4947211..4951687
RNA-Seq ExpressionMoc07g05950
SyntenyMoc07g05950
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022153197.1 uncharacterized protein LOC111020752 [Momordica charantia]1.0e-2954.67Show/hide
Query:  RTSPHGQD-PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTY
        RT P   D P VINTI  GPS GQSG KRK LA+EA  EVC    ++P   I F D D EGVH+PHNDALVI PLIDHV VRRVL+DGGASANILS  TY
Subjt:  RTSPHGQD-PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTY

Query:  TALG----------------------AEGCISLLVTVGEGDQQVPRSENF
         ALG                       EGCI L VT+G+ D QV +   F
Subjt:  TALG----------------------AEGCISLLVTVGEGDQQVPRSENF

XP_022154603.1 uncharacterized protein LOC111021825 [Momordica charantia]4.0e-3787.23Show/hide
Query:  ISLLVTVGEGDQQVPRSENFNTDALAHLAWAYETDLLRTIPVEILAESSIDQPEVMEARKLRRQATHYLMHEGKLFKRGYSLPLLRYLDPEEAR
        +  L+ + +    VPRSENFNTDALAHLAWAYETDLLRTIPVEILAESSIDQPEVMEARKLRRQATHYLMHEGKLFKRGYSLPLLRYLDPEEAR
Subjt:  ISLLVTVGEGDQQVPRSENFNTDALAHLAWAYETDLLRTIPVEILAESSIDQPEVMEARKLRRQATHYLMHEGKLFKRGYSLPLLRYLDPEEAR

XP_022156714.1 uncharacterized protein LOC111023559 [Momordica charantia]2.4e-3461.43Show/hide
Query:  SPHGQD--PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTYT
        SP  +D  P VINTIH GPS GQSG KRKAL +E AHEVCTSYS+E VVPILFD+ D + +HMPHNDALVIAP I+HVKVRRVL+DGGAS N+LSFSTY+
Subjt:  SPHGQD--PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTYT

Query:  ALG----------------------AEGCISLLVTVGEGD
        ALG                      AE CISL VT  E +
Subjt:  ALG----------------------AEGCISLLVTVGEGD

XP_022157474.1 uncharacterized protein LOC111024166 [Momordica charantia]1.4e-2954Show/hide
Query:  RTSPHGQD-PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTY
        RT P   D P VINTI  GPS GQSG KRK LA+EA  EVC    ++P   I F D D EGVH+PHNDALVIAPLIDHV VRRVL+DGGASANILS  TY
Subjt:  RTSPHGQD-PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTY

Query:  TALG----------------------AEGCISLLVTVGEGDQQVPRSENF
         ALG                       EGCI L +T+G+   QV +   F
Subjt:  TALG----------------------AEGCISLLVTVGEGDQQVPRSENF

XP_022158844.1 uncharacterized protein LOC111025310 [Momordica charantia]5.9e-4153.43Show/hide
Query:  SRSQHLREHSSTPLKSGRSEFHLVKLCSQLSTRSRPQNGRNVESATRATLTHTDQRTSPHGQDPAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSR
        SR  HL+E     ++ G    +L K        SR Q    +E + R       Q   P    PAVINTIH GPS  +SGQKRKALA+E AHEVCTSY +
Subjt:  SRSQHLREHSSTPLKSGRSEFHLVKLCSQLSTRSRPQNGRNVESATRATLTHTDQRTSPHGQDPAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSR

Query:  EPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTYTALG----------------------AEGCISLLVTVGEGDQQVPR
         PV+PILFD+QDGE VHMPHNDALVIAPLIDHVKVRRV +DGGASANI SFSTYTALG                       EGCISL VT+ EG+ QV R
Subjt:  EPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTYTALG----------------------AEGCISLLVTVGEGDQQVPR

Query:  SENF
           F
Subjt:  SENF

TrEMBL top hitse value%identityAlignment
A0A6J1DI98 uncharacterized protein LOC1110207525.1e-3054.67Show/hide
Query:  RTSPHGQD-PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTY
        RT P   D P VINTI  GPS GQSG KRK LA+EA  EVC    ++P   I F D D EGVH+PHNDALVI PLIDHV VRRVL+DGGASANILS  TY
Subjt:  RTSPHGQD-PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTY

Query:  TALG----------------------AEGCISLLVTVGEGDQQVPRSENF
         ALG                       EGCI L VT+G+ D QV +   F
Subjt:  TALG----------------------AEGCISLLVTVGEGDQQVPRSENF

A0A6J1DKR2 uncharacterized protein LOC1110218251.9e-3787.23Show/hide
Query:  ISLLVTVGEGDQQVPRSENFNTDALAHLAWAYETDLLRTIPVEILAESSIDQPEVMEARKLRRQATHYLMHEGKLFKRGYSLPLLRYLDPEEAR
        +  L+ + +    VPRSENFNTDALAHLAWAYETDLLRTIPVEILAESSIDQPEVMEARKLRRQATHYLMHEGKLFKRGYSLPLLRYLDPEEAR
Subjt:  ISLLVTVGEGDQQVPRSENFNTDALAHLAWAYETDLLRTIPVEILAESSIDQPEVMEARKLRRQATHYLMHEGKLFKRGYSLPLLRYLDPEEAR

A0A6J1DUD3 uncharacterized protein LOC1110235591.2e-3461.43Show/hide
Query:  SPHGQD--PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTYT
        SP  +D  P VINTIH GPS GQSG KRKAL +E AHEVCTSYS+E VVPILFD+ D + +HMPHNDALVIAP I+HVKVRRVL+DGGAS N+LSFSTY+
Subjt:  SPHGQD--PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTYT

Query:  ALG----------------------AEGCISLLVTVGEGD
        ALG                      AE CISL VT  E +
Subjt:  ALG----------------------AEGCISLLVTVGEGD

A0A6J1DWK7 uncharacterized protein LOC1110241666.6e-3054Show/hide
Query:  RTSPHGQD-PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTY
        RT P   D P VINTI  GPS GQSG KRK LA+EA  EVC    ++P   I F D D EGVH+PHNDALVIAPLIDHV VRRVL+DGGASANILS  TY
Subjt:  RTSPHGQD-PAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTY

Query:  TALG----------------------AEGCISLLVTVGEGDQQVPRSENF
         ALG                       EGCI L +T+G+   QV +   F
Subjt:  TALG----------------------AEGCISLLVTVGEGDQQVPRSENF

A0A6J1E0L8 uncharacterized protein LOC1110253102.9e-4153.43Show/hide
Query:  SRSQHLREHSSTPLKSGRSEFHLVKLCSQLSTRSRPQNGRNVESATRATLTHTDQRTSPHGQDPAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSR
        SR  HL+E     ++ G    +L K        SR Q    +E + R       Q   P    PAVINTIH GPS  +SGQKRKALA+E AHEVCTSY +
Subjt:  SRSQHLREHSSTPLKSGRSEFHLVKLCSQLSTRSRPQNGRNVESATRATLTHTDQRTSPHGQDPAVINTIHKGPSEGQSGQKRKALAQEAAHEVCTSYSR

Query:  EPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTYTALG----------------------AEGCISLLVTVGEGDQQVPR
         PV+PILFD+QDGE VHMPHNDALVIAPLIDHVKVRRV +DGGASANI SFSTYTALG                       EGCISL VT+ EG+ QV R
Subjt:  EPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTYTALG----------------------AEGCISLLVTVGEGDQQVPR

Query:  SENF
           F
Subjt:  SENF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGTGGGGCCCCTTGTTCAAGTCCCGGAGTCAGCATTTAAGGGAACACTCATCTACTCCCCTAAAGTCGGGGAGGAGTGAATTCCATCTTGTGAAGTTA
TGTTCCCAACTCTCCACTCGGTCTCGTCCCCAAAATGGTAGGAATGTTGAGTCGGCGACTCGGGCCACTCTCACCCATACAGATCAAAGGACGAGCCCTCACGGG
CAGGATCCTGCGGTGATAAACACCATCCACAAGGGTCCGAGCGAGGGGCAGTCTGGGCAGAAGAGGAAAGCTTTGGCCCAAGAAGCCGCGCACGAGGTCTGCACC
TCGTACTCGAGGGAGCCCGTTGTGCCGATCTTATTTGATGACCAAGACGGTGAAGGAGTGCACATGCCCCATAATGACGCCCTAGTAATCGCCCCACTAATAGAT
CACGTGAAGGTCAGAAGAGTTCTTATGGACGGTGGAGCGTCGGCTAATATCTTGTCCTTCTCGACCTACACGGCACTGGGCGCAGAGGGATGCATCTCGCTCCTT
GTCACCGTCGGCGAAGGAGATCAGCAGGTGCCGAGGTCCGAAAACTTCAACACCGACGCACTTGCTCACTTAGCCTGGGCCTACGAGACCGACCTGCTGAGAACG
ATTCCAGTTGAAATACTTGCCGAGTCGTCCATCGACCAGCCTGAAGTAATGGAGGCCAGAAAGCTTCGACGTCAAGCGACTCACTACTTGATGCATGAAGGCAAG
CTTTTCAAGAGGGGATATTCCCTACCATTGCTGCGGTACCTCGACCCAGAGGAGGCGAGGCTAGCAGAGTATCAAAACCGTATGGCTCGGTACTACAATGCCATA
GTAAAAGTCAGAACGTTCAAGCCTAGTGACCTCGTCCTCAAGAAGGCAATGCAGCATGTCGGATCACTCGAGTCGATTGGGAAGGTTCGTACAGAGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGTGGGGCCCCTTGTTCAAGTCCCGGAGTCAGCATTTAAGGGAACACTCATCTACTCCCCTAAAGTCGGGGAGGAGTGAATTCCATCTTGTGAAGTTA
TGTTCCCAACTCTCCACTCGGTCTCGTCCCCAAAATGGTAGGAATGTTGAGTCGGCGACTCGGGCCACTCTCACCCATACAGATCAAAGGACGAGCCCTCACGGG
CAGGATCCTGCGGTGATAAACACCATCCACAAGGGTCCGAGCGAGGGGCAGTCTGGGCAGAAGAGGAAAGCTTTGGCCCAAGAAGCCGCGCACGAGGTCTGCACC
TCGTACTCGAGGGAGCCCGTTGTGCCGATCTTATTTGATGACCAAGACGGTGAAGGAGTGCACATGCCCCATAATGACGCCCTAGTAATCGCCCCACTAATAGAT
CACGTGAAGGTCAGAAGAGTTCTTATGGACGGTGGAGCGTCGGCTAATATCTTGTCCTTCTCGACCTACACGGCACTGGGCGCAGAGGGATGCATCTCGCTCCTT
GTCACCGTCGGCGAAGGAGATCAGCAGGTGCCGAGGTCCGAAAACTTCAACACCGACGCACTTGCTCACTTAGCCTGGGCCTACGAGACCGACCTGCTGAGAACG
ATTCCAGTTGAAATACTTGCCGAGTCGTCCATCGACCAGCCTGAAGTAATGGAGGCCAGAAAGCTTCGACGTCAAGCGACTCACTACTTGATGCATGAAGGCAAG
CTTTTCAAGAGGGGATATTCCCTACCATTGCTGCGGTACCTCGACCCAGAGGAGGCGAGGCTAGCAGAGTATCAAAACCGTATGGCTCGGTACTACAATGCCATA
GTAAAAGTCAGAACGTTCAAGCCTAGTGACCTCGTCCTCAAGAAGGCAATGCAGCATGTCGGATCACTCGAGTCGATTGGGAAGGTTCGTACAGAGTCTTGA
Protein sequenceShow/hide protein sequence
MRGWGPLFKSRSQHLREHSSTPLKSGRSEFHLVKLCSQLSTRSRPQNGRNVESATRATLTHTDQRTSPHGQDPAVINTIHKGPSEGQSGQKRKALAQEAAHEVCT
SYSREPVVPILFDDQDGEGVHMPHNDALVIAPLIDHVKVRRVLMDGGASANILSFSTYTALGAEGCISLLVTVGEGDQQVPRSENFNTDALAHLAWAYETDLLRT
IPVEILAESSIDQPEVMEARKLRRQATHYLMHEGKLFKRGYSLPLLRYLDPEEARLAEYQNRMARYYNAIVKVRTFKPSDLVLKKAMQHVGSLESIGKVRTES