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Moc07g08890 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g08890
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr7:6924228..6929733
RNA-Seq ExpressionMoc07g08890
SyntenyMoc07g08890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK18885.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-2368.6Show/hide
Query:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
        K KN + K+     S    S  ++QLQDMI NSIRAQY GP Q+S  YSK YTKRID+LRMP+GYQPPKFQQFDGKGNPKQHIAHF
Subjt:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.7e-2368.6Show/hide
Query:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
        K KN + ++     S    S  ++QLQDMITNSIRAQY GPSQ+S  YSK YTKRID+LRMP+GYQPPKFQQFDGKGNPKQH+AHF
Subjt:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.5e-2367.44Show/hide
Query:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
        K KN + ++     S    S  ++QLQDMIT+SIRAQY GPSQ+S  YSK YTKRID+LRMP+GYQPPKFQQFDGKGNPKQH+AHF
Subjt:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]6.5e-2367.44Show/hide
Query:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
        K KN + ++     S    S  ++QLQDMIT+SIRAQY GPSQ+S  YSK YTKRID+LRMP+GYQPPKFQQFDGKGNPKQH+AHF
Subjt:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.7e-2368.6Show/hide
Query:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
        K KN + ++     S    S  ++QLQDMITNSIRAQY GPSQ+S  YSK YTKRID+LRMP+GYQPPKFQQFDGKGNPKQH+AHF
Subjt:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
TrEMBL top hitse value%identityAlignment
A0A5A7SUW1 Retrotransposon gag protein9.2e-2367.44Show/hide
Query:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
        K KN + ++     S    S  ++QLQDMI NSIRAQY GP Q+S  YSK YTKRID+LRMP+GYQPPKFQQFDGKGNPKQHIAHF
Subjt:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
A0A5A7TC87 Ty3-gypsy retrotransposon protein4.1e-2368.6Show/hide
Query:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
        K KN + ++     S    S  ++QLQDMI NSIRAQY GPSQ+S  YSK YTKRID+LRMP+GYQPPKFQQFDGKGNPKQHIAHF
Subjt:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
A0A5A7UR48 Ty3-gypsy retrotransposon protein7.0e-2367.44Show/hide
Query:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
        K KN + ++     S    S  ++QLQDMI NSIRAQY GP Q++ TYSK YTKRID LRMP+GYQPPKFQQFDGKGNPKQHIAHF
Subjt:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
A0A5D3D5T0 Ty3-gypsy retrotransposon protein3.2e-2368.6Show/hide
Query:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
        K KN + K+     S    S  ++QLQDMI NSIRAQY GP Q+S  YSK YTKRID+LRMP+GYQPPKFQQFDGKGNPKQHIAHF
Subjt:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
A0A5D3DIN4 Ty3-gypsy retrotransposon protein4.1e-2368.6Show/hide
Query:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
        K KN + ++     S    S  ++QLQDMI NSIRAQY GPSQ+S  YSK YTKRID+LRMP+GYQPPKFQQFDGKGNPKQHIAHF
Subjt:  KSKNFINKSNSSTSSKLKTSKILRQLQDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTTTGGTACCTCTGGTGGAGGTTATGTGAGAACAAAACCTGCATCCTCTTGGTGGACCAAATACTGGCCACACACACTATCAAGAAGTCGTCTAGAGCTTTCGG
CCGATTTTACTTAAGCAACCTACCCGATTTGGCCAAAGATAACGAAGGAGATGAGATCGTACCTAGTTGGGTATGTTACCTCGACTCCCAAGATCGATACAACCAAATTC
TGTTGACCAATATTAGGGACTGTGGCCTCGCTGCTAGGCTGACAGAAGAGGAGATGTCGCCCCGTCCTTCCAGGTTCGACAGTACTTGGCAACGGGTGCCTCGGAAGAAC
GGACCTGTCGGCTCCACCAGCACAGAGCGGGCAGAAAATGCCCTGGGGCAAAGGGAAGAGGGCACGGGTAGGGTCCCCAAGTCCCAGGAAGACCTTGAAGATGAGGCTGG
AGCCGCGAAGCCAAAGAACTTCAACAAGCCGCAAAGCCGAAGAACTTCACATACGCAAAGTCGAAGAACTTCAACAAGCTACAAAGCCGAAGAACTTCACAAGCGCAAAG
CTGAAGACTTCACAAAGTCTTCATCAAACTACAAGTCAAAGAACTTCATAAACAAGTCGAATTCTTCAACAAGCTCAAAGCTGAAGACTTCAAAGATCCTTCGACAGCTC
CAAGATATGATTACAAATTCGATTAGAGCTCAATACGATGGACCTTCTCAAAGCTCCCTAACGTACTCCAAGCGGTACACCAAGAGGATTGATGACTTGAGAATGCCAAT
TGGATATCAGCCTCCGAAGTTTCAGCAATTCGACGGAAAGGGCAATCCTAAGCAACATATTGCTCATTTCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTTTGGTACCTCTGGTGGAGGTTATGTGAGAACAAAACCTGCATCCTCTTGGTGGACCAAATACTGGCCACACACACTATCAAGAAGTCGTCTAGAGCTTTCGG
CCGATTTTACTTAAGCAACCTACCCGATTTGGCCAAAGATAACGAAGGAGATGAGATCGTACCTAGTTGGGTATGTTACCTCGACTCCCAAGATCGATACAACCAAATTC
TGTTGACCAATATTAGGGACTGTGGCCTCGCTGCTAGGCTGACAGAAGAGGAGATGTCGCCCCGTCCTTCCAGGTTCGACAGTACTTGGCAACGGGTGCCTCGGAAGAAC
GGACCTGTCGGCTCCACCAGCACAGAGCGGGCAGAAAATGCCCTGGGGCAAAGGGAAGAGGGCACGGGTAGGGTCCCCAAGTCCCAGGAAGACCTTGAAGATGAGGCTGG
AGCCGCGAAGCCAAAGAACTTCAACAAGCCGCAAAGCCGAAGAACTTCACATACGCAAAGTCGAAGAACTTCAACAAGCTACAAAGCCGAAGAACTTCACAAGCGCAAAG
CTGAAGACTTCACAAAGTCTTCATCAAACTACAAGTCAAAGAACTTCATAAACAAGTCGAATTCTTCAACAAGCTCAAAGCTGAAGACTTCAAAGATCCTTCGACAGCTC
CAAGATATGATTACAAATTCGATTAGAGCTCAATACGATGGACCTTCTCAAAGCTCCCTAACGTACTCCAAGCGGTACACCAAGAGGATTGATGACTTGAGAATGCCAAT
TGGATATCAGCCTCCGAAGTTTCAGCAATTCGACGGAAAGGGCAATCCTAAGCAACATATTGCTCATTTCTTTTAG
Protein sequenceShow/hide protein sequence
MGFWYLWWRLCENKTCILLVDQILATHTIKKSSRAFGRFYLSNLPDLAKDNEGDEIVPSWVCYLDSQDRYNQILLTNIRDCGLAARLTEEEMSPRPSRFDSTWQRVPRKN
GPVGSTSTERAENALGQREEGTGRVPKSQEDLEDEAGAAKPKNFNKPQSRRTSHTQSRRTSTSYKAEELHKRKAEDFTKSSSNYKSKNFINKSNSSTSSKLKTSKILRQL
QDMITNSIRAQYDGPSQSSLTYSKRYTKRIDDLRMPIGYQPPKFQQFDGKGNPKQHIAHFF