CuGenDBv2

Gene ID	Moc07g08930
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr7:6943126..6945986
RNA-Seq Expression	Moc07g08930
Synteny	Moc07g08930
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN74198.1 hypothetical protein VITISV_005765 [Vitis vinifera]

2.8e-35

35.19

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Query:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF
        VVKE T  +L+K L   YEK  AN K+ L  K FN+ M E  SV  H+++   I N+L  + I  D+E++A+ +L SLP+SWE M+ AVSN  G+  LK+
Subjt:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF

Query:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG
        + I D+  +EE RR+                   G FK  C     + E++S N V EE  D  L  V  +  +D WVL + AS H   +R    ++ AG
Subjt:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG

Query:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS
        +                          G   LL  VRYIP  R NL+SV +LDD+G++  F GG WK  + +RV+A   K  ++Y++
Subjt:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS

RVW17810.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

8.2e-35

34.84

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Query:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF
        VVKE T  +L+K L   YEK  AN K+ L  K FN+ M E  SV  H+++   I N+L  + I  D+E++A+ +L SLP+SWE M+ AVSN  G+  LK+
Subjt:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF

Query:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG
        + I D+  +EE RR+                   G FK  C     + E++S N V EE  D  L  V  +  +D WVL + AS H   +R    ++ AG
Subjt:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG

Query:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS
        +                          G   LL  VR+IP  R NL+SV +LDD+G++  F GG WK  + +RV+A   K  ++Y++
Subjt:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS

RVW62119.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

8.2e-35

34.84

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Query:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF
        VVKE T  +L+K L   YEK  AN K+ L  K FN+ M E  SV  H+++   I N+L  + I  D+E++A+ +L SLP+SWE M+ AVSN  G+  LK+
Subjt:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF

Query:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG
        + I D+  +EE RR+                   G FK  C     + E++S N V EE  D  L  V  +  +D WVL + AS H   +R    ++ AG
Subjt:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG

Query:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS
        +                          G   LL  VR+IP  R NL+SV +LDD+G++  F GG WK  + +RV+A   K  ++Y++
Subjt:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS

RVW73393.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

8.2e-35

34.84

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Query:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF
        VVKE T  +L+K L   YEK  AN K+ L  K FN+ M E  SV  H+++   I N+L  + I  D+E++A+ +L SLP+SWE M+ AVSN  G+  LK+
Subjt:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF

Query:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG
        + I D+  +EE RR+                   G FK  C     + E++S N V EE  D  L  V  +  +D WVL + AS H   +R    ++ AG
Subjt:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG

Query:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS
        +                          G   LL  VR+IP  R NL+SV +LDD+G++  F GG WK  + +RV+A   K  ++Y++
Subjt:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS

RVW88854.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.8e-34

34.84

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Query:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF
        VVKE T  +L+K L   YEK  AN K+ L  K FN+ M E  SV  H+++   I N+L  + I  D+E++A+ +L SLP+SWE M+ AVSN  G+  LK+
Subjt:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF

Query:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG
        + I D+   EE RR+                   G FK  C     + E++S N V EE  D  L  V  +  +D WVL + AS H   +R    ++ AG
Subjt:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG

Query:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS
        +                          G   LL  VR+IP  R NL+SV +LDD+G++  F GG WK  + +RV+A   K  ++Y++
Subjt:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS

TrEMBL top hits

e value

%identity

Alignment

A0A438C3I2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.0e-35

34.84

Show/hide

Query:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF
        VVKE T  +L+K L   YEK  AN K+ L  K FN+ M E  SV  H+++   I N+L  + I  D+E++A+ +L SLP+SWE M+ AVSN  G+  LK+
Subjt:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF

Query:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG
        + I D+  +EE RR+                   G FK  C     + E++S N V EE  D  L  V  +  +D WVL + AS H   +R    ++ AG
Subjt:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG

Query:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS
        +                          G   LL  VR+IP  R NL+SV +LDD+G++  F GG WK  + +RV+A   K  ++Y++
Subjt:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS

A0A438FQ91 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.0e-35

34.84

Show/hide

Query:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF
        VVKE T  +L+K L   YEK  AN K+ L  K FN+ M E  SV  H+++   I N+L  + I  D+E++A+ +L SLP+SWE M+ AVSN  G+  LK+
Subjt:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF

Query:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG
        + I D+  +EE RR+                   G FK  C     + E++S N V EE  D  L  V  +  +D WVL + AS H   +R    ++ AG
Subjt:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG

Query:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS
        +                          G   LL  VR+IP  R NL+SV +LDD+G++  F GG WK  + +RV+A   K  ++Y++
Subjt:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS

A0A438GME7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.0e-35

34.84

Show/hide

Query:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF
        VVKE T  +L+K L   YEK  AN K+ L  K FN+ M E  SV  H+++   I N+L  + I  D+E++A+ +L SLP+SWE M+ AVSN  G+  LK+
Subjt:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF

Query:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG
        + I D+  +EE RR+                   G FK  C     + E++S N V EE  D  L  V  +  +D WVL + AS H   +R    ++ AG
Subjt:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG

Query:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS
        +                          G   LL  VR+IP  R NL+SV +LDD+G++  F GG WK  + +RV+A   K  ++Y++
Subjt:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS

A5AM64 Integrase catalytic domain-containing protein

8.9e-35

34.49

Show/hide

Query:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF
        VVKE T  +L+K L   YEK  AN K+ L  K FN+ M E  S+  H+++   I N+L  + I  D+E++A+ +L SLP+SWE M+ AVSN  G+  LK+
Subjt:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF

Query:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG
        + I D+  +EE RR+                   G FK  C     + E+ S N V EE  D  L  V  +  +D WVL + AS H   +R    ++ AG
Subjt:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG

Query:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS
        +                          G   LL  VR+IP  R NL+SV +LDD+G++  F GG WK  + +RV+A   K  ++Y++
Subjt:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS

A5B5N4 Integrase catalytic domain-containing protein

1.4e-35

35.19

Show/hide

Query:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF
        VVKE T  +L+K L   YEK  AN K+ L  K FN+ M E  SV  H+++   I N+L  + I  D+E++A+ +L SLP+SWE M+ AVSN  G+  LK+
Subjt:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF

Query:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG
        + I D+  +EE RR+                   G FK  C     + E++S N V EE  D  L  V  +  +D WVL + AS H   +R    ++ AG
Subjt:  SAICDVAFSEEARRK------------------LGKFKEDC-----EKENNSTNVVIEEGIDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAG

Query:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS
        +                          G   LL  VRYIP  R NL+SV +LDD+G++  F GG WK  + +RV+A   K  ++Y++
Subjt:  E--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVS

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.8e-20

23.21

Show/hide

Query:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF
        ++ E TA+ +   L+  Y       K+ L  + + +HM EGT+  SH++    ++ +L  +G+KI+EE KA+ LL SLP S++ + T +  L G+ +++ 
Subjt:  VVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVNSHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKF

Query:  SAICDVAFSEEARRKL--------------------------------------------------GKFKEDC------------EKENNSTNVVIEEG-
          +       E  RK                                                   G FK DC            +K +++T  +++   
Subjt:  SAICDVAFSEEARRKL--------------------------------------------------GKFKEDC------------EKENNSTNVVIEEG-

Query:  -----IDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAGE--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDD
             I+E   C+  +    +WV+ T AS H    R  F  + AG+                          G  L+L+ VR++P  R+NL+S   LD D
Subjt:  -----IDEFLACVQRNISVDQWVLHTTASLHIASYRHWFSSFTAGE--------------------------GVELLLRGVRYIPRFRLNLLSVEKLDDD

Query:  GYSSEFSGGCWKFNRESRVVATDHKRSSMYVSKFEV
        GY S F+   W+  + S V+A    R ++Y +  E+
Subjt:  GYSSEFSGGCWKFNRESRVVATDHKRSSMYVSKFEV

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCACAACAGTGTATTTCTGATTGCAGCTCGAACTCGGCCTCCAGACCGATCTGAATACTTGGGCGGACCTGCACAAAAAGGTGAGCACTCCGACGATCAAGTC
AGTATAGGTGGTAGTCCCGCTAATCTCGCGACGGTTACACCCGGTAATCTCGGGACCGTCGGTTACACCCGTTTGGTGGTGAAAGAGACTACAGCGAAAGAATTG
TTGAAGACCTTGCAAGATAGGTATGAAAAATCTTATGCCAATACAAAAATACTTCTATGGACGAAGTATTTTAATATCCACATGGAGGAGGGAACCTCGGTGAAT
TCCCACATCGATAAACTCACTGACATCTTGAATAAACTCGAAGGGATGGGTATCAAGATCGATGAGGAGGTGAAAGCTATGAGGCTGTTGACGTCTTTGCCTGAC
AGTTGGGAGACGATGAAGACCGCGGTGTCGAATTTGCTAGGGGAAAATAGTTTGAAGTTTTCAGCTATTTGTGATGTCGCCTTTTCTGAGGAAGCCCGAAGAAAA
TTAGGAAAGTTCAAAGAAGATTGTGAGAAGGAGAACAATTCTACAAACGTTGTAATAGAAGAAGGGATTGATGAGTTTCTGGCTTGTGTTCAAAGGAACATATCT
GTAGACCAGTGGGTGCTTCACACTACAGCATCATTGCACATTGCTTCATACAGACATTGGTTCTCATCTTTTACTGCAGGCGAAGGGGTCGAGTTGTTGTTGCGA
GGTGTCAGGTATATTCCTAGGTTCAGATTGAATTTGTTATCCGTAGAGAAGCTAGATGACGATGGCTACAGCAGTGAGTTTAGTGGGGGTTGCTGGAAGTTCAAT
AGGGAATCCAGGGTGGTGGCAACTGACCATAAGAGATCTTCTATGTATGTGTCAAAGTTTGAGGTTGCCTGGAGATCTGAGAGACAGAGGATGCACAGGGCTGCA
GATGGTTTAGGTAAAGGAAAGGGTAAGGGGAACAACTCAGGTAAGTGTTCAACTGGTTGTCAGTTTCATGCCCCAGTTGTCAGACGGAACAGCGAGCTAATGAAG
TCGCATAAGCGAGATAGTGCATCGAAGGAGATGACTATAGAGGGTATTGAAGTCAAGGGGAATGTCTCTAGAAAGGCAACAGACTTAGGTGGGAGCTCCAAGTCA
TCAGGGGAATCTTCCTTCAGAGGTCATTGGGTTCGATCGAGAAAGGAAGCTATAGGGACCACTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MHNSVFLIAARTRPPDRSEYLGGPAQKGEHSDDQVSIGGSPANLATVTPGNLGTVGYTRLVVKETTAKELLKTLQDRYEKSYANTKILLWTKYFNIHMEEGTSVN
SHIDKLTDILNKLEGMGIKIDEEVKAMRLLTSLPDSWETMKTAVSNLLGENSLKFSAICDVAFSEEARRKLGKFKEDCEKENNSTNVVIEEGIDEFLACVQRNIS
VDQWVLHTTASLHIASYRHWFSSFTAGEGVELLLRGVRYIPRFRLNLLSVEKLDDDGYSSEFSGGCWKFNRESRVVATDHKRSSMYVSKFEVAWRSERQRMHRAA
DGLGKGKGKGNNSGKCSTGCQFHAPVVRRNSELMKSHKRDSASKEMTIEGIEVKGNVSRKATDLGGSSKSSGESSFRGHWVRSRKEAIGTT

Moc07g08930 (gene) of Bitter gourd (OHB3-1) v2 genome