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Moc07g09700 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g09700
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Genome locationchr7:7463243..7464139
RNA-Seq ExpressionMoc07g09700
SyntenyMoc07g09700
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PIN22510.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]2.5e-2840.09Show/hide
Query:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLG-------------------DFEECYAITSLNPVMF--DEF
        MP Y KF+ DI+S+K+ +G++E+VA+T+  S  + + LP K  DPGSFTIPC+IG   LG                   D    Y    +  ++F  D+F
Subjt:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLG-------------------DFEECYAITSLNPVMF--DEF

Query:  -----YDLLVTEIEGELDKIAEGPEDVTNPVEKIQKEECKSLLP------SIVEPPTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEK
             + +L  E++ E+  I       T     + K   +   P      SI EPPTLE KPLP+HL+YAYLG+ DTLP+II+S+LS      LL++L  
Subjt:  -----YDLLVTEIEGELDKIAEGPEDVTNPVEKIQKEECKSLLP------SIVEPPTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEK

Query:  HKKAIGWTIADI
        HK AIGWTIADI
Subjt:  HKKAIGWTIADI

XP_012830525.1 PREDICTED: uncharacterized protein LOC105951621, partial [Erythranthe guttata]1.3e-2734.54Show/hide
Query:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIG------------------------------------GKNLGD---
        MP++ KFLKD+VS+K+K GEHE++A+T+  S  +  P+P K  DPG FTIP +IG                                      +LGD   
Subjt:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIG------------------------------------GKNLGD---

Query:  -------------FEECYAITSLNPVMFDEFYDLLVTEIEGEL--------DKIAEGP--EDVTNPVEKIQKEECKSLL-------PSIVEPPTLEQKPL
                      +EC+A   L+ + FD    L+   +E  L        +++ E     D   P+ + + E  ++ +       PS++EPP LE K L
Subjt:  -------------FEECYAITSLNPVMFDEFYDLLVTEIEGEL--------DKIAEGP--EDVTNPVEKIQKEECKSLL-------PSIVEPPTLEQKPL

Query:  PSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI
        PSHLKY YLG ++TLPVII+S+L+  +E  LL++L +HK A+GWTIADI
Subjt:  PSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI

XP_022151603.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111019515 [Momordica charantia]1.1e-5879.35Show/hide
Query:  MTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLGDFEECYAITSLNPVMFDEFYDLLVTEIEGELDKIAEGPEDVTNPVEKIQKEECKSLLPSIVEPPT
        MTKCSS AVGSPLPMKCNDPGSFTIP SIGGKNL                          EIE ELDKIAEGPEDVT+PVEKIQKEECKSLLPSIVEPPT
Subjt:  MTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLGDFEECYAITSLNPVMFDEFYDLLVTEIEGELDKIAEGPEDVTNPVEKIQKEECKSLLPSIVEPPT

Query:  LEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI
        LEQKPLPSHLKYAYLGDNDTLPVI+ SNLSPTNEYSLLQILEKHKKAIGWTIADI
Subjt:  LEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI

XP_030483376.1 uncharacterized protein LOC115699972 [Cannabis sativa]1.9e-2836.8Show/hide
Query:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLG----------------------------------------
        MPNY KFLKDI+++K+++GE E VA+T+  S  + S +P K  DPGSFTIPCSIGG+++G                                        
Subjt:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLG----------------------------------------

Query:  -----------------DFEECYAITSLNPVMFDEF-------------YDLLVTEIEGELDKIA--EGPEDVTN---PVEKIQKEEC--KSLLPSIVEP
                          F +   I+ ++ ++ ++F             +D L    E E +++A  E  + + N   P E ++ +E   K   PSI EP
Subjt:  -----------------DFEECYAITSLNPVMFDEF-------------YDLLVTEIEGELDKIA--EGPEDVTN---PVEKIQKEEC--KSLLPSIVEP

Query:  PTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAI
        P LE KPLPSHLKYAYLG+NDTLPVIIASNL   NE +LL++L+KHKKA+
Subjt:  PTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAI

XP_038889559.1 uncharacterized protein LOC120079447 [Benincasa hispida]2.5e-2836.19Show/hide
Query:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLGDFEECYAITSLN----------------------------
        MP Y KF KDI+++K++I E E++ + +  +  V + LP K  DPGSFTIPCSIGG  +G    C+   S+N                            
Subjt:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLGDFEECYAITSLN----------------------------

Query:  -----------PVMFDEFY---DLLVTEIEGELDK--------------------IAEGP-EDVTNPVEKIQKEE--------------CKSLLPSIVEP
                    V  D F    D ++ + E + D+                    I E P E+VT   E +  EE               K + PS+ EP
Subjt:  -----------PVMFDEFY---DLLVTEIEGELDK--------------------IAEGP-EDVTNPVEKIQKEE--------------CKSLLPSIVEP

Query:  PTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI
        P LE KPLPSHLKYA+LG N TLPVII++NL+  NE+SLLQ+L+K  +AIGWT+ADI
Subjt:  PTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI

TrEMBL top hitse value%identityAlignment
A0A2G9HYT9 DNA-directed DNA polymerase1.2e-2840.09Show/hide
Query:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLG-------------------DFEECYAITSLNPVMF--DEF
        MP Y KF+ DI+S+K+ +G++E+VA+T+  S  + + LP K  DPGSFTIPC+IG   LG                   D    Y    +  ++F  D+F
Subjt:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLG-------------------DFEECYAITSLNPVMF--DEF

Query:  -----YDLLVTEIEGELDKIAEGPEDVTNPVEKIQKEECKSLLP------SIVEPPTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEK
             + +L  E++ E+  I       T     + K   +   P      SI EPPTLE KPLP+HL+YAYLG+ DTLP+II+S+LS      LL++L  
Subjt:  -----YDLLVTEIEGELDKIAEGPEDVTNPVEKIQKEECKSLLP------SIVEPPTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEK

Query:  HKKAIGWTIADI
        HK AIGWTIADI
Subjt:  HKKAIGWTIADI

A0A6A3CE04 Uncharacterized protein5.1e-2742.86Show/hide
Query:  MPNYAKFLKDIVSRKKKIGEHELVAMTK--CSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLGDFEECYAITSLNPVMFDEFYDLLVTEIEGELDKIAEGP
        MP YAKF K+ V++K+K+ ++E ++M K  CSS    S LP   +DPGSF IPCSIG K +G    C   +S+N +M D F   L  ++    D  AE P
Subjt:  MPNYAKFLKDIVSRKKKIGEHELVAMTK--CSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLGDFEECYAITSLNPVMFDEFYDLLVTEIEGELDKIAEGP

Query:  EDVTNP--------------VEKIQKEECKSLLPSIVEPPTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI
         +V++                E +  EE      S+   PTLE K LP HLKY YLG+++TLPVII+S L+P  E SLL +L +HKKA+GWT+ D+
Subjt:  EDVTNP--------------VEKIQKEECKSLLPSIVEPPTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI

A0A6J1DCL7 LOW QUALITY PROTEIN: uncharacterized protein LOC1110195156.7e-5979.35Show/hide
Query:  MTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLGDFEECYAITSLNPVMFDEFYDLLVTEIEGELDKIAEGPEDVTNPVEKIQKEECKSLLPSIVEPPT
        MTKCSS AVGSPLPMKCNDPGSFTIP SIGGKNL                          EIE ELDKIAEGPEDVT+PVEKIQKEECKSLLPSIVEPPT
Subjt:  MTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLGDFEECYAITSLNPVMFDEFYDLLVTEIEGELDKIAEGPEDVTNPVEKIQKEECKSLLPSIVEPPT

Query:  LEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI
        LEQKPLPSHLKYAYLGDNDTLPVI+ SNLSPTNEYSLLQILEKHKKAIGWTIADI
Subjt:  LEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI

A0A6J1E110 uncharacterized protein LOC1110254248.8e-2798.41Show/hide
Query:  PSIVEPPTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI
        P+IVEPPTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI
Subjt:  PSIVEPPTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI

A0A6P6UJL6 Reverse transcriptase1.3e-2535.56Show/hide
Query:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLGDF------------EECYAITSLNPV----MFDEFYD---
        +P YAKFL+D+ + +K++   E V + +  S  +   LP KC DPG FTIPC IG  ++G+             +  YA  +L P+    +  +  D   
Subjt:  MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLGDF------------EECYAITSLNPV----MFDEFYD---

Query:  ----------LLVTEIEG--ELDKI--AEGPEDVTNPVEKIQKEEC--------------------------KSLLPSIVEPPTLEQKPLPSHLKYAYLG
                  L V EIEG  EL+ +       + T+ VE  ++ +C                          K LLPS+V+ P LE KPLP HLKY YLG
Subjt:  ----------LLVTEIEG--ELDKI--AEGPEDVTNPVEKIQKEEC--------------------------KSLLPSIVEPPTLEQKPLPSHLKYAYLG

Query:  DNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI
        + +TLPVII+++LS   E  L ++L +HK+AIGWTIADI
Subjt:  DNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAATTATGCTAAGTTTTTGAAAGATATAGTTTCTAGGAAGAAAAAAATAGGAGAGCATGAACTGGTAGCCATGACAAAATGTAGTAGTGAAGCTGTAGGCAGCCC
GCTACCCATGAAGTGTAACGATCCTGGCAGTTTTACCATTCCATGTTCCATAGGAGGAAAAAACTTAGGAGACTTTGAAGAGTGCTATGCTATAACTAGCTTGAATCCTG
TTATGTTTGATGAGTTTTATGACTTGTTAGTTACAGAGATTGAAGGAGAGCTTGATAAGATAGCAGAAGGACCGGAAGATGTGACCAATCCTGTTGAAAAAATACAAAAA
GAAGAATGCAAGTCATTACTTCCGTCCATAGTGGAACCACCCACGTTGGAGCAGAAGCCATTGCCGTCGCATTTGAAATATGCGTATCTAGGGGATAACGACACTTTACC
AGTTATTATAGCCTCCAATTTATCACCTACTAATGAATATTCTTTATTGCAGATTTTGGAGAAACACAAAAAGGCCATTGGATGGACGATAGCAGATATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAATTATGCTAAGTTTTTGAAAGATATAGTTTCTAGGAAGAAAAAAATAGGAGAGCATGAACTGGTAGCCATGACAAAATGTAGTAGTGAAGCTGTAGGCAGCCC
GCTACCCATGAAGTGTAACGATCCTGGCAGTTTTACCATTCCATGTTCCATAGGAGGAAAAAACTTAGGAGACTTTGAAGAGTGCTATGCTATAACTAGCTTGAATCCTG
TTATGTTTGATGAGTTTTATGACTTGTTAGTTACAGAGATTGAAGGAGAGCTTGATAAGATAGCAGAAGGACCGGAAGATGTGACCAATCCTGTTGAAAAAATACAAAAA
GAAGAATGCAAGTCATTACTTCCGTCCATAGTGGAACCACCCACGTTGGAGCAGAAGCCATTGCCGTCGCATTTGAAATATGCGTATCTAGGGGATAACGACACTTTACC
AGTTATTATAGCCTCCAATTTATCACCTACTAATGAATATTCTTTATTGCAGATTTTGGAGAAACACAAAAAGGCCATTGGATGGACGATAGCAGATATCTGA
Protein sequenceShow/hide protein sequence
MPNYAKFLKDIVSRKKKIGEHELVAMTKCSSEAVGSPLPMKCNDPGSFTIPCSIGGKNLGDFEECYAITSLNPVMFDEFYDLLVTEIEGELDKIAEGPEDVTNPVEKIQK
EECKSLLPSIVEPPTLEQKPLPSHLKYAYLGDNDTLPVIIASNLSPTNEYSLLQILEKHKKAIGWTIADI