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Moc07g10090 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g10090
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr7:7759850..7764354
RNA-Seq ExpressionMoc07g10090
SyntenyMoc07g10090
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK24230.1 gag/pol protein [Cucumis melo var. makuwa]3.8e-2765.71Show/hide
Query:  MSTSIIALLAAKKLNGATNIGI--DLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS
        M++SI+ LLA+KKLNG     +  +LNTILV+DDLRFVL ++CPQ LA NA       YDRWIKANEK +VYILAS+SDVLAKKHE   T KEIMDSL+ 
Subjt:  MSTSIIALLAAKKLNGATNIGI--DLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQP
        MFGQP
Subjt:  MFGQP

XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]1.4e-3277.36Show/hide
Query:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSIIALLAA++LNG        +LNTILVIDDL+FVL +DCPQA A NATVA+   YDRWIKAN+K  VYILASISDVLAKKHEDT+TAKEIMDSLQS
Subjt:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS

XP_022158062.1 uncharacterized protein LOC111024637 [Momordica charantia]5.3e-2971.7Show/hide
Query:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSII LL A+KLN         ++NTIL+IDDLRFVL +DCPQA A NATVA+ N+YDRWIKAN+K  V ILASISDVLAKKHE++V  KEIMDSLQS
Subjt:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]4.7e-3377.57Show/hide
Query:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MS SIIALLAA+KLNG        +LNTILVIDDLRFVL +DCPQA   NATVA+ N YDRWIK+N+K  VYILASISDVLAKKHEDTVT KEIMDSLQS
Subjt:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSL
        MFGQPSL
Subjt:  MFGQPSL

XP_022158791.1 uncharacterized protein LOC111025258 [Momordica charantia]1.1e-2667.29Show/hide
Query:  MSTSIIALLAAKKLNGATNIGI---DLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQ
        MSTS I LLA+ KLNG  N GI   +LNTILVIDDLRFVL ++CP ALA N+   + + +DRW KANEK  VYILASISDVL+KKHE   TA+EIMDSLQ
Subjt:  MSTSIIALLAAKKLNGATNIGI---DLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQ

Query:  SMFGQPS
        ++FGQPS
Subjt:  SMFGQPS

TrEMBL top hitse value%identityAlignment
A0A5D3DLT3 Gag/pol protein1.9e-2765.71Show/hide
Query:  MSTSIIALLAAKKLNGATNIGI--DLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS
        M++SI+ LLA+KKLNG     +  +LNTILV+DDLRFVL ++CPQ LA NA       YDRWIKANEK +VYILAS+SDVLAKKHE   T KEIMDSL+ 
Subjt:  MSTSIIALLAAKKLNGATNIGI--DLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQP
        MFGQP
Subjt:  MFGQP

A0A6J1DFZ2 uncharacterized protein LOC1110200956.6e-3377.36Show/hide
Query:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSIIALLAA++LNG        +LNTILVIDDL+FVL +DCPQA A NATVA+   YDRWIKAN+K  VYILASISDVLAKKHEDT+TAKEIMDSLQS
Subjt:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS

A0A6J1DW68 uncharacterized protein LOC1110246372.6e-2971.7Show/hide
Query:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MSTSII LL A+KLN         ++NTIL+IDDLRFVL +DCPQA A NATVA+ N+YDRWIKAN+K  V ILASISDVLAKKHE++V  KEIMDSLQS
Subjt:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPS
        MFGQPS
Subjt:  MFGQPS

A0A6J1DWL0 uncharacterized protein LOC1110247342.3e-3377.57Show/hide
Query:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS
        MS SIIALLAA+KLNG        +LNTILVIDDLRFVL +DCPQA   NATVA+ N YDRWIK+N+K  VYILASISDVLAKKHEDTVT KEIMDSLQS
Subjt:  MSTSIIALLAAKKLNGAT--NIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQS

Query:  MFGQPSL
        MFGQPSL
Subjt:  MFGQPSL

A0A6J1E205 uncharacterized protein LOC1110252585.4e-2767.29Show/hide
Query:  MSTSIIALLAAKKLNGATNIGI---DLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQ
        MSTS I LLA+ KLNG  N GI   +LNTILVIDDLRFVL ++CP ALA N+   + + +DRW KANEK  VYILASISDVL+KKHE   TA+EIMDSLQ
Subjt:  MSTSIIALLAAKKLNGATNIGI---DLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDVLAKKHEDTVTAKEIMDSLQ

Query:  SMFGQPS
        ++FGQPS
Subjt:  SMFGQPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGTCCATGTTGCAGTGAAAACACTTTCCCTTGTCTGCAACCTTGGGTTTGCCTTTCTTGGCAATGGCAGTAGAAGAGGGTGTCGATTTGCTTTCAAAGGTCGAAC
TTCGATGGAACCTTTTGGAGGTTGCAACGTTCGCCTCCCTTCTTGTCCCTTATTTTTCATAATTGATTGGTCGCTTGAAAGATGTTCGTGGCGTCGGATTGGGCGAATTT
TTGCAAAAAATAGCGAAGAAAACGAAGTAGGCCGCGCAGACAGTGTCATGGCGCCTTGCAGCAGCGCCATGGCGCTGCGGAAGAACAGCAGACAGTGCCACAACGCTGTG
CTGCGCCATGGCGTTGGCGTTGCAATTGCAGGTTTTTGTTGCTGCAGCATTGCGGCACTGTCCCGGGTGTTTTCCGACGCAGTTCCGTTGTCCCGCATGTCTACTTCTAT
TATTGCCTTGTTAGCCGCAAAAAAACTTAACGGCGCTACAAACATAGGAATCGACCTAAACACTATACTAGTGATAGATGATCTTAGGTTCGTCTTGCTAAAGGATTGTC
CTCAAGCTCTTGCGCGTAACGCCACTGTGGCGATGTGCAACGTCTATGACAGATGGATCAAAGCCAATGAAAAGGTCAATGTCTACATCTTGGCGAGTATATCTGATGTG
CTTGCTAAGAAGCACGAGGACACGGTCACTGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGGACAACCGTCTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTGTCCATGTTGCAGTGAAAACACTTTCCCTTGTCTGCAACCTTGGGTTTGCCTTTCTTGGCAATGGCAGTAGAAGAGGGTGTCGATTTGCTTTCAAAGGTCGAAC
TTCGATGGAACCTTTTGGAGGTTGCAACGTTCGCCTCCCTTCTTGTCCCTTATTTTTCATAATTGATTGGTCGCTTGAAAGATGTTCGTGGCGTCGGATTGGGCGAATTT
TTGCAAAAAATAGCGAAGAAAACGAAGTAGGCCGCGCAGACAGTGTCATGGCGCCTTGCAGCAGCGCCATGGCGCTGCGGAAGAACAGCAGACAGTGCCACAACGCTGTG
CTGCGCCATGGCGTTGGCGTTGCAATTGCAGGTTTTTGTTGCTGCAGCATTGCGGCACTGTCCCGGGTGTTTTCCGACGCAGTTCCGTTGTCCCGCATGTCTACTTCTAT
TATTGCCTTGTTAGCCGCAAAAAAACTTAACGGCGCTACAAACATAGGAATCGACCTAAACACTATACTAGTGATAGATGATCTTAGGTTCGTCTTGCTAAAGGATTGTC
CTCAAGCTCTTGCGCGTAACGCCACTGTGGCGATGTGCAACGTCTATGACAGATGGATCAAAGCCAATGAAAAGGTCAATGTCTACATCTTGGCGAGTATATCTGATGTG
CTTGCTAAGAAGCACGAGGACACGGTCACTGCTAAGGAGATCATGGACTCGCTGCAGAGCATGTTTGGACAACCGTCTTTATAG
Protein sequenceShow/hide protein sequence
MPVHVAVKTLSLVCNLGFAFLGNGSRRGCRFAFKGRTSMEPFGGCNVRLPSCPLFFIIDWSLERCSWRRIGRIFAKNSEENEVGRADSVMAPCSSAMALRKNSRQCHNAV
LRHGVGVAIAGFCCCSIAALSRVFSDAVPLSRMSTSIIALLAAKKLNGATNIGIDLNTILVIDDLRFVLLKDCPQALARNATVAMCNVYDRWIKANEKVNVYILASISDV
LAKKHEDTVTAKEIMDSLQSMFGQPSL