; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc07g11290 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g11290
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr7:8736494..8739511
RNA-Seq ExpressionMoc07g11290
SyntenyMoc07g11290
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039558.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-5665.56Show/hide
Query:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL
        +T  NA +RG+QLV+QFVR+LKGNTF+WYTDLEPE I+SW+QLE EFLNRFYS+RRTV++MELTN KQ KGE V++YINRWRALSLD KD  TELS VE+
Subjt:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL

Query:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
        CTQGMHWGLLYILQGIKP TF+ELAT A DMELSIAS+G       E      E KS   V      +S+V +    KFS
Subjt:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
KAA0051584.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-5765.56Show/hide
Query:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL
        +T  NA +RG+QLV+QF+R+LKGN F+WYTDLEPE I+SWKQLE EFLNRFYS RRTV++MELTN KQ KGE V++YINRWRALSLD KD  TELS VE+
Subjt:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL

Query:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
        CTQGMHWGLLYILQGIKPRTF+ELAT A DMELSIAS+G       E      E KS   V      +S+V ++   KFS
Subjt:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.4e-5665Show/hide
Query:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL
        +T  NA +RG+QLV+QFVR+LKGN F+WYTDLEPE+IESW+QLE EFLNRFYS RRTV++MELTN KQ KGE V++YINRWRALSLD KD  TELS VE+
Subjt:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL

Query:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
        CTQGMHWGLLYILQGIKPRTF+ELAT A DMELSIAS+G       E      E K    +      +S+V ++   KFS
Subjt:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]8.4e-5761.81Show/hide
Query:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL
        +T  NA +RG+QLV+QFVR+LKGN F+WYTDLEPE+IESW+QLE EFLNRFYS RRTV++MELTN KQ KGE V++YINRWRALSLD KD  TELS VE+
Subjt:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL

Query:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFSILINTEGYKIEFYRGKIQR
        CTQGMHWGLLYILQGIKPRTF+ELAT A DMELSIAS+G       + ++  V++    D  + K  + IV S++K   S+++NT    ++F +GK  R
Subjt:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFSILINTEGYKIEFYRGKIQR
XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.4e-5665Show/hide
Query:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL
        +T  NA +RG+QLV+QFVR+LKGN F+WYTDLEPE+IESW+QLE EFLNRFYS RRTV++MELTN KQ KGE V++YINRWRALSLD KD  TELS VE+
Subjt:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL

Query:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
        CTQGMHWGLLYILQGIKPRTF+ELAT A DMELSIAS+G       E      E K    +      +S+V ++   KFS
Subjt:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
TrEMBL top hitse value%identityAlignment
A0A5A7T9K9 Ty3-gypsy retrotransposon protein6.9e-5765.56Show/hide
Query:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL
        +T  NA +RG+QLV+QFVR+LKGNTF+WYTDLEPE I+SW+QLE EFLNRFYS+RRTV++MELTN KQ KGE V++YINRWRALSLD KD  TELS VE+
Subjt:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL

Query:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
        CTQGMHWGLLYILQGIKP TF+ELAT A DMELSIAS+G       E      E KS   V      +S+V +    KFS
Subjt:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
A0A5A7TYI6 Retrotransposon gag protein5.9e-5665.34Show/hide
Query:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL
        +T  NA +RG+QLV+QFVR+LKGN F+WYTDLEPE I+SW+QLE EFLNRFYS RRTV++MELTN KQ KGE V++YINRWRALSLD KD  TELS VE+
Subjt:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL

Query:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKI-QSIVTSSM
        CTQGMHWGLLYILQGIKPRTF+ELAT A DMELSIA++G         + +T+ +K+  ++ D KKI  +++  SM
Subjt:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKI-QSIVTSSM
A0A5A7U8E4 Retrotransposon gag protein1.1e-5765.56Show/hide
Query:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL
        +T  NA +RG+QLV+QF+R+LKGN F+WYTDLEPE I+SWKQLE EFLNRFYS RRTV++MELTN KQ KGE V++YINRWRALSLD KD  TELS VE+
Subjt:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL

Query:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
        CTQGMHWGLLYILQGIKPRTF+ELAT A DMELSIAS+G       E      E KS   V      +S+V ++   KFS
Subjt:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFS
A0A5D3DU00 Retrotransposon gag protein5.9e-5665.34Show/hide
Query:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL
        +T  NA +RG+QLV+QFVR+LKGN F+WYTDLEPE I+SW+QLE EFLNRFYS RRTV++MELTN KQ KGE V++YINRWRALSLD KD  TELS VE+
Subjt:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL

Query:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKI-QSIVTSSM
        CTQGMHWGLLYILQGIKPRTF+ELAT A DMELSIA++G         + +T+ +K+  ++ D KKI  +++  SM
Subjt:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKI-QSIVTSSM
A0A6J1DYQ8 uncharacterized protein LOC1110258349.1e-5770.11Show/hide
Query:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL
        +T  NA TRG+QLVKQFVRTLKGN FDWYTDLEPETIESW+QLE EFLNRFYS +RTV++MELTN +Q KGE VVEYINRWRALSLD KD  TELS VEL
Subjt:  QTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTELSDVEL

Query:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQG--NATIDQYERMMKTVEEKS---FGDVTDDKKIQS
        CTQGMHW LLYILQ IKPRTF+ELAT A DMELSIA++G  ++ +   E+  K+VE+ S   FG  T   K+ S
Subjt:  CTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQG--NATIDQYERMMKTVEEKS---FGDVTDDKKIQS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAACATGATTGAGAGTCAAGATGTTGATGATGCTGAGTCAAGTCAGACCCTAATTAATGCCGATACGAGAGGCAATCAATTGGTCAAGCAGTTTGTTCGGACATT
GAAGGGAAACACCTTTGACTGGTATACTGATCTAGAGCCTGAAACGATCGAGAGTTGGAAACAACTTGAAGGAGAGTTCCTAAATCGCTTCTATAGTATGAGGCGAACTG
TCAACATCATGGAGCTCACCAACTGCAAACAAAGCAAAGGTGAATCGGTTGTCGAGTATATCAACCGATGGAGAGCTCTAAGTCTTGATTACAAAGATAGTCATACTGAA
CTTTCCGATGTCGAATTATGCACTCAAGGTATGCATTGGGGACTTCTTTACATTCTTCAAGGTATAAAACCTCGCACTTTTAAAGAGCTAGCAACTTGTGCTCGTGATAT
GGAGCTAAGCATTGCTAGTCAAGGAAACGCGACAATCGATCAATATGAAAGAATGATGAAGACCGTTGAGGAGAAATCATTTGGTGATGTGACTGATGACAAGAAAATTC
AGAGCATTGTTACTTCCTCTATGAAGAGAAAATTCTCCATTCTCATAAATACAGAAGGATACAAAATCGAATTTTACAGAGGGAAAATACAGAGGAAATTCAAACCTTTG
AAGATCGTTTTTTCAGTGAATTCCCCTCGAACACCACCACCGGATCTTCCTCGCTATCCTCTTGGGTCTCGGGATCGTGCTTGTGGTAGCACCTTGATGGAAGAGAGGGA
GAGGTTGAGAGAGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATAACATGATTGAGAGTCAAGATGTTGATGATGCTGAGTCAAGTCAGACCCTAATTAATGCCGATACGAGAGGCAATCAATTGGTCAAGCAGTTTGTTCGGACATT
GAAGGGAAACACCTTTGACTGGTATACTGATCTAGAGCCTGAAACGATCGAGAGTTGGAAACAACTTGAAGGAGAGTTCCTAAATCGCTTCTATAGTATGAGGCGAACTG
TCAACATCATGGAGCTCACCAACTGCAAACAAAGCAAAGGTGAATCGGTTGTCGAGTATATCAACCGATGGAGAGCTCTAAGTCTTGATTACAAAGATAGTCATACTGAA
CTTTCCGATGTCGAATTATGCACTCAAGGTATGCATTGGGGACTTCTTTACATTCTTCAAGGTATAAAACCTCGCACTTTTAAAGAGCTAGCAACTTGTGCTCGTGATAT
GGAGCTAAGCATTGCTAGTCAAGGAAACGCGACAATCGATCAATATGAAAGAATGATGAAGACCGTTGAGGAGAAATCATTTGGTGATGTGACTGATGACAAGAAAATTC
AGAGCATTGTTACTTCCTCTATGAAGAGAAAATTCTCCATTCTCATAAATACAGAAGGATACAAAATCGAATTTTACAGAGGGAAAATACAGAGGAAATTCAAACCTTTG
AAGATCGTTTTTTCAGTGAATTCCCCTCGAACACCACCACCGGATCTTCCTCGCTATCCTCTTGGGTCTCGGGATCGTGCTTGTGGTAGCACCTTGATGGAAGAGAGGGA
GAGGTTGAGAGAGTTTTGA
Protein sequenceShow/hide protein sequence
MNNMIESQDVDDAESSQTLINADTRGNQLVKQFVRTLKGNTFDWYTDLEPETIESWKQLEGEFLNRFYSMRRTVNIMELTNCKQSKGESVVEYINRWRALSLDYKDSHTE
LSDVELCTQGMHWGLLYILQGIKPRTFKELATCARDMELSIASQGNATIDQYERMMKTVEEKSFGDVTDDKKIQSIVTSSMKRKFSILINTEGYKIEFYRGKIQRKFKPL
KIVFSVNSPRTPPPDLPRYPLGSRDRACGSTLMEERERLREF