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Moc07g13210 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g13210
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr7:9931066..9934655
RNA-Seq ExpressionMoc07g13210
SyntenyMoc07g13210
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]1.4e-3162.73Show/hide
Query:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP
        VE+++  AN E LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ R F+   LVL++V  HVGAL+P WEGP+ V  I+RPR Y+L+DL G  L HP
Subjt:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP

Query:  WNAEHLKRYY
        WNAEHL+ YY
Subjt:  WNAEHLKRYY

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]1.4e-1039.67Show/hide
Query:  QLASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDF-IRGNSPQDPKERRKLARRAARFVVRGGTLVEHYEPTANEEELLLNLDLLEERR
        +LASAY+TDL R+VPV+IL   S+ +P+LMEI + + +WMD I DF + G+ P DP + RKL R+AA ++++ G L +          LL  LD  E R 
Subjt:  QLASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDF-IRGNSPQDPKERRKLARRAARFVVRGGTLVEHYEPTANEEELLLNLDLLEERR

Query:  AMAQLRLAEYQGRMARHYNAR
         M ++    ++G    H  A+
Subjt:  AMAQLRLAEYQGRMARHYNAR

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]2.5e-3138.25Show/hide
Query:  HSLNA-PS----SFEVSHPQWRGQVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFAAPTEELELVPLLSPEKQ----------
        HSL A PS    + + S P   G VRGEQ  SRECYASALKG SVCALE  AG D +LE +ADLP   ++EF A TEELELVPLLSPE+Q          
Subjt:  HSLNA-PS----SFEVSHPQWRGQVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFAAPTEELELVPLLSPEKQ----------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------LASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRKLARRAARFVVRGGTL
                   LASAYETDLARSVPV+IL+NPSI EPDLME+  P  SWMD IV+FI+GN PQDPKE +K+AR+ A+F++R G L
Subjt:  -----------LASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRKLARRAARFVVRGGTL

XP_022158219.1 protein NYNRIN-like [Momordica charantia]5.8e-4960.1Show/hide
Query:  SHPQWRGQVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQ-----------------------------
        S P   G VRGEQTASRECYASALKGSSVCALE  A  + TLEF+ADLPR+EF+APTEELELVPLLS EKQ                             
Subjt:  SHPQWRGQVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQ-----------------------------

Query:  -----------------------------LASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRKLARRAARFVVRG
                                     LASAYETDLARSVPV+IL+NPSISEPDLMEIGAPESSWMD I DFIRGNSPQDPKERRKLA R ARFVVR 
Subjt:  -----------------------------LASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRKLARRAARFVVRG

Query:  GTL
        G L
Subjt:  GTL

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]1.9e-3972.97Show/hide
Query:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP
        +E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FEVKGIVRP TY+LADL+  VLAHP
Subjt:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP

Query:  WNAEHLKRYYP
        WNAEHLKRYYP
Subjt:  WNAEHLKRYYP

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]7.0e-1061.67Show/hide
Query:  QLASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRK
        +LASAYETDLAR V ++IL+NPSI EPD+ME+  P  SWMD IV+FI+G   Q  KE  K
Subjt:  QLASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRK

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]7.6e-3371Show/hide
Query:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP
        VE+YE   NEEELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFEVKGIVRP TY+LADL+G +L+HP
Subjt:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP

TrEMBL top hitse value%identityAlignment
A0A6J1DWM2 Ribonuclease H7.0e-3262.73Show/hide
Query:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP
        VE+++  AN E LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ R F+   LVL++V  HVGAL+P WEGP+ V  I+RPR Y+L+DL G  L HP
Subjt:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP

Query:  WNAEHLKRYY
        WNAEHL+ YY
Subjt:  WNAEHLKRYY

A0A6J1DWM2 Ribonuclease H6.8e-1139.67Show/hide
Query:  QLASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDF-IRGNSPQDPKERRKLARRAARFVVRGGTLVEHYEPTANEEELLLNLDLLEERR
        +LASAY+TDL R+VPV+IL   S+ +P+LMEI + + +WMD I DF + G+ P DP + RKL R+AA ++++ G L +          LL  LD  E R 
Subjt:  QLASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDF-IRGNSPQDPKERRKLARRAARFVVRGGTLVEHYEPTANEEELLLNLDLLEERR

Query:  AMAQLRLAEYQGRMARHYNAR
         M ++    ++G    H  A+
Subjt:  AMAQLRLAEYQGRMARHYNAR

A0A6J1DWM2 Ribonuclease H1.2e-3138.25Show/hide
Query:  HSLNA-PS----SFEVSHPQWRGQVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFAAPTEELELVPLLSPEKQ----------
        HSL A PS    + + S P   G VRGEQ  SRECYASALKG SVCALE  AG D +LE +ADLP   ++EF A TEELELVPLLSPE+Q          
Subjt:  HSLNA-PS----SFEVSHPQWRGQVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLP---RKEFAAPTEELELVPLLSPEKQ----------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------LASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRKLARRAARFVVRGGTL
                   LASAYETDLARSVPV+IL+NPSI EPDLME+  P  SWMD IV+FI+GN PQDPKE +K+AR+ A+F++R G L
Subjt:  -----------LASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRKLARRAARFVVRGGTL

A0A6J1DXL9 uncharacterized protein LOC1110254489.1e-4072.97Show/hide
Query:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP
        +E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FEVKGIVRP TY+LADL+  VLAHP
Subjt:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP

Query:  WNAEHLKRYYP
        WNAEHLKRYYP
Subjt:  WNAEHLKRYYP

A0A6J1DXL9 uncharacterized protein LOC1110254483.4e-1061.67Show/hide
Query:  QLASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRK
        +LASAYETDLAR V ++IL+NPSI EPD+ME+  P  SWMD IV+FI+G   Q  KE  K
Subjt:  QLASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRK

A0A6J1DXL9 uncharacterized protein LOC1110254483.7e-3371Show/hide
Query:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP
        VE+YE   NEEELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFEVKGIVRP TY+LADL+G +L+HP
Subjt:  VEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHP

A0A6J1DYS0 Ribonuclease H2.8e-4960.1Show/hide
Query:  SHPQWRGQVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQ-----------------------------
        S P   G VRGEQTASRECYASALKGSSVCALE  A  + TLEF+ADLPR+EF+APTEELELVPLLS EKQ                             
Subjt:  SHPQWRGQVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLPRKEFAAPTEELELVPLLSPEKQ-----------------------------

Query:  -----------------------------LASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRKLARRAARFVVRG
                                     LASAYETDLARSVPV+IL+NPSISEPDLMEIGAPESSWMD I DFIRGNSPQDPKERRKLA R ARFVVR 
Subjt:  -----------------------------LASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRKLARRAARFVVRG

Query:  GTL
        G L
Subjt:  GTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGAGGTCGCAATTGAAGAAAAGCCCGACACCCCTGGTTGGGTTCTCTGGAGAATCGGTCATCCCAGAGGGTTGCATCGACTTGCCGGTCACGCTGGGACC
CATCATCCACTCATTTCGGGCCATTCCCTCAACGCTCCATCAAGTTTTGAAGTATCCCACCCCCAATGGCGTGGGCAAGTCCGAGGAGAACAGACCGCTTCGAGG
GAGTGTTATGCCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTCGAAACTCTCGCCGGTAGGGATGGGACGCTCGAGTTCGAGGCCGACCTGCCGAGGAAGGAG
TTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTGCTTAGTCCCGAGAAGCAATTAGCATCAGCGTACGAGACCGACCTGGCCAGGTCGGTCCCCGTCAAG
ATCTTAAATAATCCCTCGATCTCAGAGCCAGATCTGATGGAGATCGGCGCTCCAGAATCCTCATGGATGGACTCGATTGTGGACTTCATTAGGGGCAACTCACCA
CAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAACATTAGTAGAGCATTACGAGCCTACGGCAAATGAGGAAGAG
CTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTTCGA
CCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACACATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAGTC
CGACCTAGGACGTACGTATTGGCCGATCTGCAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGAGGTCGCAATTGAAGAAAAGCCCGACACCCCTGGTTGGGTTCTCTGGAGAATCGGTCATCCCAGAGGGTTGCATCGACTTGCCGGTCACGCTGGGACC
CATCATCCACTCATTTCGGGCCATTCCCTCAACGCTCCATCAAGTTTTGAAGTATCCCACCCCCAATGGCGTGGGCAAGTCCGAGGAGAACAGACCGCTTCGAGG
GAGTGTTATGCCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTCGAAACTCTCGCCGGTAGGGATGGGACGCTCGAGTTCGAGGCCGACCTGCCGAGGAAGGAG
TTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTGCTTAGTCCCGAGAAGCAATTAGCATCAGCGTACGAGACCGACCTGGCCAGGTCGGTCCCCGTCAAG
ATCTTAAATAATCCCTCGATCTCAGAGCCAGATCTGATGGAGATCGGCGCTCCAGAATCCTCATGGATGGACTCGATTGTGGACTTCATTAGGGGCAACTCACCA
CAAGACCCCAAGGAGCGCAGAAAGTTGGCAAGGCGAGCAGCTCGGTTCGTGGTCCGAGGTGGAACATTAGTAGAGCATTACGAGCCTACGGCAAATGAGGAAGAG
CTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTTCGA
CCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACACATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAGTC
CGACCTAGGACGTACGTATTGGCCGATCTGCAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTGA
Protein sequenceShow/hide protein sequence
MDEVAIEEKPDTPGWVLWRIGHPRGLHRLAGHAGTHHPLISGHSLNAPSSFEVSHPQWRGQVRGEQTASRECYASALKGSSVCALETLAGRDGTLEFEADLPRKE
FAAPTEELELVPLLSPEKQLASAYETDLARSVPVKILNNPSISEPDLMEIGAPESSWMDSIVDFIRGNSPQDPKERRKLARRAARFVVRGGTLVEHYEPTANEEE
LLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEVKGIVRPRTYVLADLQGDVLAHPWNAEHLKRYYP