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Moc07g18280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g18280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr7:13027452..13032280
RNA-Seq ExpressionMoc07g18280
SyntenyMoc07g18280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW13216.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]8.1e-3337.7Show/hide
Query:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG------------------TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLL
        F+GTDF+YW+ Q  DYL+  +L LP L  K   MK  +W  LD++VLG                   S+A H+NEF+ + N+L +V++ F DE+ A+++L
Subjt:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG------------------TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLL

Query:  RSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------------------------------------------GHLKR
         SLP+SWE M+ A+SNS GKEKLK+ D+RD+ L EEI + D    S S                                               GH KR
Subjt:  RSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------------------------------------------GHLKR

Query:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS
         CK+PKK + ++  AN V EE+ DAL+LAV+S  D WV+DS  S
Subjt:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS

RVW62119.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]9.6e-3438.11Show/hide
Query:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------
        F+GTDF+YW+ Q  DYL+  +L LP L  K   MK  +W  LD++VLG                                                    
Subjt:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------

Query:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------GHLKR
           S+A H+NEF+ + N+L +V++ F DE+ A+++L SLP+SWE M+ A+SNS GKEKLK+ D+RD+ L EEI + D    S S           GH KR
Subjt:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------GHLKR

Query:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS
         CK+PKK + ++  AN V EE+HDAL+LAV+S  D WV+DS  S
Subjt:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS

RVW73393.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]8.1e-3337.7Show/hide
Query:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------
        F+GTDF+YW+ Q  DYL+  +L LP L  K   MK  +W  LD++VLG                                                    
Subjt:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------

Query:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------GHLKR
           S+A H+NEF+ + N+L +V++ F DE+ A+++L SLP+SWE M+ A+SNS GKEKLK+ D+RD+ L EEI + D    S S           GH KR
Subjt:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------GHLKR

Query:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS
         CK+PKK + ++  AN V EE+ DAL+LAV+S  D WV+DS  S
Subjt:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS

RVW88937.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]7.8e-3639.48Show/hide
Query:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------
        FNGTDF+YW+ Q  DYL+  +L LP L  K   MK  +W  LD++VLG                                                    
Subjt:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------

Query:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASISGHLKRNCKAPKKYEGK
           S+A H+NEF+ + N+L++V++ F DE+ A+++L SLP+SWE M+ A+SNS G EKLK+ D+RD+ L EEI + D    S SGH KR CK+PKK + +
Subjt:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASISGHLKRNCKAPKKYEGK

Query:  ESCANIVAEEIHDALVLAVESSHDTWVVDSDRS
        +  AN V EE+ DAL+LAV+S  D WV+DS  S
Subjt:  ESCANIVAEEIHDALVLAVESSHDTWVVDSDRS

XP_022152845.1 uncharacterized protein LOC111020469 [Momordica charantia]1.9e-4245.14Show/hide
Query:  VDYLHSYELELPLDKKSTGMKEVKWKKLDKKVLG-----------------------------------------------------TSMAAHINEFDAL
        +DYLHS ELE PL+ K   M E +WKKLD+KVLG                                                     T + AH+NEFD L
Subjt:  VDYLHSYELELPLDKKSTGMKEVKWKKLDKKVLG-----------------------------------------------------TSMAAHINEFDAL

Query:  VNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-------------------------------
        +NKLVAVDL F+ E+ AI+LLRSLPDSWEPM+AAISNSC KEKLKF DVRD AL EEI + D  IA  S                               
Subjt:  VNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-------------------------------

Query:  -----------GHLKRNCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDS
                   GHLK NCKAPKK EG E+ AN VAE+IHDALV+AVES+HDTWV+DS
Subjt:  -----------GHLKRNCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDS

TrEMBL top hitse value%identityAlignment
A0A438C3I2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-3337.7Show/hide
Query:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------
        F+GTDF+YW+ Q  DYL+  +L LP L  K   MK  +W  LD++VLG                                                    
Subjt:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------

Query:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------GHLKR
           S+A H+NEF+ + N+L +V++ F DE+ A+++L SLP+SWE M+ A+SNS GKEKLK+ D+RD+ L EEI + D    S S           GH KR
Subjt:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------GHLKR

Query:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS
         CK+PKK + ++  AN V EE+ DAL+LAV+S  D WV+DS  S
Subjt:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS

A0A438FQ91 Retrovirus-related Pol polyprotein from transposon TNT 1-944.6e-3438.11Show/hide
Query:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------
        F+GTDF+YW+ Q  DYL+  +L LP L  K   MK  +W  LD++VLG                                                    
Subjt:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------

Query:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------GHLKR
           S+A H+NEF+ + N+L +V++ F DE+ A+++L SLP+SWE M+ A+SNS GKEKLK+ D+RD+ L EEI + D    S S           GH KR
Subjt:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------GHLKR

Query:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS
         CK+PKK + ++  AN V EE+HDAL+LAV+S  D WV+DS  S
Subjt:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS

A0A438GME7 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-3337.7Show/hide
Query:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------
        F+GTDF+YW+ Q  DYL+  +L LP L  K   MK  +W  LD++VLG                                                    
Subjt:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------

Query:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------GHLKR
           S+A H+NEF+ + N+L +V++ F DE+ A+++L SLP+SWE M+ A+SNS GKEKLK+ D+RD+ L EEI + D    S S           GH KR
Subjt:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-----------GHLKR

Query:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS
         CK+PKK + ++  AN V EE+ DAL+LAV+S  D WV+DS  S
Subjt:  NCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRS

A0A438HWV5 Retrovirus-related Pol polyprotein from transposon TNT 1-943.8e-3639.48Show/hide
Query:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------
        FNGTDF+YW+ Q  DYL+  +L LP L  K   MK  +W  LD++VLG                                                    
Subjt:  FNGTDFSYWKDQTVDYLHSYELELP-LDKKSTGMKEVKWKKLDKKVLG----------------------------------------------------

Query:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASISGHLKRNCKAPKKYEGK
           S+A H+NEF+ + N+L++V++ F DE+ A+++L SLP+SWE M+ A+SNS G EKLK+ D+RD+ L EEI + D    S SGH KR CK+PKK + +
Subjt:  --TSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASISGHLKRNCKAPKKYEGK

Query:  ESCANIVAEEIHDALVLAVESSHDTWVVDSDRS
        +  AN V EE+ DAL+LAV+S  D WV+DS  S
Subjt:  ESCANIVAEEIHDALVLAVESSHDTWVVDSDRS

A0A6J1DF43 uncharacterized protein LOC1110204699.3e-4345.14Show/hide
Query:  VDYLHSYELELPLDKKSTGMKEVKWKKLDKKVLG-----------------------------------------------------TSMAAHINEFDAL
        +DYLHS ELE PL+ K   M E +WKKLD+KVLG                                                     T + AH+NEFD L
Subjt:  VDYLHSYELELPLDKKSTGMKEVKWKKLDKKVLG-----------------------------------------------------TSMAAHINEFDAL

Query:  VNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-------------------------------
        +NKLVAVDL F+ E+ AI+LLRSLPDSWEPM+AAISNSC KEKLKF DVRD AL EEI + D  IA  S                               
Subjt:  VNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGKEKLKFVDVRDVALGEEIHKTDYCIASIS-------------------------------

Query:  -----------GHLKRNCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDS
                   GHLK NCKAPKK EG E+ AN VAE+IHDALV+AVES+HDTWV+DS
Subjt:  -----------GHLKRNCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAAGAAAATAAATTGATTATTTTTAATGGAACTGATTTTTCGTACTGGAAGGATCAGACAGTAGATTATCTACATTCCTACGAATTGGAATTGCCATTAGACAA
GAAGTCGACTGGCATGAAAGAAGTCAAATGGAAAAAGTTGGACAAGAAGGTGTTGGGTACATCTATGGCTGCCCATATAAATGAGTTTGATGCGTTGGTTAACAAACTGG
TTGCTGTTGATTTAACATTTACGGATGAATTAAATGCTATCGTGTTGTTAAGATCCTTACCTGACAGTTGGGAGCCTATGAAGGCAGCTATTTCAAATTCTTGTGGGAAA
GAGAAATTGAAATTCGTAGATGTTAGAGATGTAGCTCTTGGAGAGGAAATTCACAAAACGGATTATTGTATTGCGTCTATTTCTGGACATTTGAAGAGGAACTGCAAAGC
CCCAAAGAAATATGAGGGGAAAGAATCTTGTGCAAATATTGTTGCTGAAGAAATACATGATGCTCTAGTTCTTGCAGTTGAGAGCTCTCATGACACATGGGTGGTCGATT
CAGACAGAAGTAAATTGGATGCCAAATTGAAGAAATATTTCTTTATTACGTATGGTGGAGCTGAAATAGAGTCAGATGGAAGCATAGAGAAGACTCATTATATAAGTTCT
CCTGACGTTGAGACCAAAACAACAGAAATTGAAGATCAGAATACAATTACTCCTGAAGAAACGGTCTTCCTCACCAAGCTTGCTCCCAATCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAAGAAAATAAATTGATTATTTTTAATGGAACTGATTTTTCGTACTGGAAGGATCAGACAGTAGATTATCTACATTCCTACGAATTGGAATTGCCATTAGACAA
GAAGTCGACTGGCATGAAAGAAGTCAAATGGAAAAAGTTGGACAAGAAGGTGTTGGGTACATCTATGGCTGCCCATATAAATGAGTTTGATGCGTTGGTTAACAAACTGG
TTGCTGTTGATTTAACATTTACGGATGAATTAAATGCTATCGTGTTGTTAAGATCCTTACCTGACAGTTGGGAGCCTATGAAGGCAGCTATTTCAAATTCTTGTGGGAAA
GAGAAATTGAAATTCGTAGATGTTAGAGATGTAGCTCTTGGAGAGGAAATTCACAAAACGGATTATTGTATTGCGTCTATTTCTGGACATTTGAAGAGGAACTGCAAAGC
CCCAAAGAAATATGAGGGGAAAGAATCTTGTGCAAATATTGTTGCTGAAGAAATACATGATGCTCTAGTTCTTGCAGTTGAGAGCTCTCATGACACATGGGTGGTCGATT
CAGACAGAAGTAAATTGGATGCCAAATTGAAGAAATATTTCTTTATTACGTATGGTGGAGCTGAAATAGAGTCAGATGGAAGCATAGAGAAGACTCATTATATAAGTTCT
CCTGACGTTGAGACCAAAACAACAGAAATTGAAGATCAGAATACAATTACTCCTGAAGAAACGGTCTTCCTCACCAAGCTTGCTCCCAATCTCTGA
Protein sequenceShow/hide protein sequence
MTEENKLIIFNGTDFSYWKDQTVDYLHSYELELPLDKKSTGMKEVKWKKLDKKVLGTSMAAHINEFDALVNKLVAVDLTFTDELNAIVLLRSLPDSWEPMKAAISNSCGK
EKLKFVDVRDVALGEEIHKTDYCIASISGHLKRNCKAPKKYEGKESCANIVAEEIHDALVLAVESSHDTWVVDSDRSKLDAKLKKYFFITYGGAEIESDGSIEKTHYISS
PDVETKTTEIEDQNTITPEETVFLTKLAPNL