; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc07g19970 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g19970
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr7:14340319..14341263
RNA-Seq ExpressionMoc07g19970
SyntenyMoc07g19970
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK03695.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-0843.69Show/hide
Query:  MTSKKTSSSNTSYTG--PITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIE-SAPSSVQLEKIPEIDVMSVMMADASSTKERMAEME
        MTS+  +S   SY G  P T SCS+EI   +D  P  VAK I +Q+ KP + G+VIKENP   E ++ S    E++P+ ++MSVM+ +  +++ RMAE+E
Subjt:  MTSKKTSSSNTSYTG--PITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIE-SAPSSVQLEKIPEIDVMSVMMADASSTKERMAEME

Query:  KKL
        KK+
Subjt:  KKL

XP_022156574.1 uncharacterized protein LOC111023450 [Momordica charantia]5.9e-0956.63Show/hide
Query:  SCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKLAA
        S SKEI L +DQTPPA+A+KI                N LF ESA SS+QLEKI EIDV+ VM+ADAS  + R+AEME+KLAA
Subjt:  SCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKLAA

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.3e-0846.94Show/hide
Query:  SKKTSSSNTSYTGPITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKL
        + K+S+++ +YTGPITRS SK I  G+DQ   A+A+ IL+Q+ +  + G+VIKENPL+ +   +S +  K    DVMSVMMAD  + +  MAEME+K+
Subjt:  SKKTSSSNTSYTGPITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKL

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.3e-0846.94Show/hide
Query:  SKKTSSSNTSYTGPITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKL
        + K+S+++ +YTGPITRS SK I  G+DQ   A+A+ IL+Q+ +  + G+VIKENPL+ +   +S +  K    DVMSVMMAD  + +  MAEME+K+
Subjt:  SKKTSSSNTSYTGPITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKL

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.3e-0846.94Show/hide
Query:  SKKTSSSNTSYTGPITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKL
        + K+S+++ +YTGPITRS SK I  G+DQ   A+A+ IL+Q+ +  + G+VIKENPL+ +   +S +  K    DVMSVMMAD  + +  MAEME+K+
Subjt:  SKKTSSSNTSYTGPITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKL

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein4.2e-0843.69Show/hide
Query:  MTSKKTSSSNTSYTG--PITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIE-SAPSSVQLEKIPEIDVMSVMMADASSTKERMAEME
        MTS+  +S   S  G  P TRS S+EI   +D  P  VAK I +Q+ KP + G+VIKENP   E ++ S    E++P+ ++MSVM+ D  ++++RMAE+E
Subjt:  MTSKKTSSSNTSYTG--PITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIE-SAPSSVQLEKIPEIDVMSVMMADASSTKERMAEME

Query:  KKL
        KK+
Subjt:  KKL

A0A5D3BMN5 Ty3-gypsy retrotransposon protein4.2e-0846.43Show/hide
Query:  TRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIE-SAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKL
        TRS S+EI L +D  P  VAK I +Q+ KP + G+VIKENP   E ++ S    E++P+ ++MSVM+ D  ++++RMAE+EKK+
Subjt:  TRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIE-SAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKL

A0A5D3BX77 Retrotransposon gag protein8.4e-0943.69Show/hide
Query:  MTSKKTSSSNTSYTG--PITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIE-SAPSSVQLEKIPEIDVMSVMMADASSTKERMAEME
        MTS+  +S   SY G  P T SCS+EI   +D  P  VAK I +Q+ KP + G+VIKENP   E ++ S    E++P+ ++MSVM+ +  +++ RMAE+E
Subjt:  MTSKKTSSSNTSYTG--PITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIE-SAPSSVQLEKIPEIDVMSVMMADASSTKERMAEME

Query:  KKL
        KK+
Subjt:  KKL

A0A5D3BY54 Ty3-gypsy retrotransposon protein4.2e-0848.08Show/hide
Query:  MTSKKTSSSNT----SYTGPITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEM
        M SKK +S+++    +YTGPITRS SK I   +DQ    VA+ IL+Q+ +  + G+VIKENPL+  S  SS + +K    DVMSVMMAD  + +  MAEM
Subjt:  MTSKKTSSSNT----SYTGPITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEM

Query:  EKKL
        E+K+
Subjt:  EKKL

A0A6J1DTW2 uncharacterized protein LOC1110234502.9e-0956.63Show/hide
Query:  SCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKLAA
        S SKEI L +DQTPPA+A+KI                N LF ESA SS+QLEKI EIDV+ VM+ADAS  + R+AEME+KLAA
Subjt:  SCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKLAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCTAAGAAAACTTCTTCGAGCAATACCTCTTACACAGGACCGATCACCCGTAGCTGTTCAAAAGAAATCTGGTTAGGAAAAGATCAAACACCTCCAGCTGTTGC
TAAGAAAATACTGCAGCAGATGAAGAAACCTACTCAAGTTGGGGTCGTTATCAAGGAGAATCCTTTGTTCATCGAGTCTGCTCCTTCCTCTGTTCAGTTGGAGAAAATTC
CAGAAATCGATGTGATGTCTGTTATGATGGCCGATGCAAGCAGCACGAAAGAAAGGATGGCTGAAATGGAAAAGAAACTCGCTGCGTGTGATGGAGTGGGTGGCAAGGCT
GAAGGGATGAGAATCTCGGGGCGGAAGCGAATCTTCGTTGCTGATCTTCGGGATACAAAACCGAAATTGAATGAAGGAAAAAATAAAGGAAACTTTACCTTTGAAGAACG
TTTCTTCAATGAGTTTCCCTCGAACACCACCACTATGTCTTCCTCGCTATCCTCTTGGGTCTCGGGATCGTGCTGGTGGGAGCAATCCTTTGGAACGAGAGGGAGAGATT
GA
mRNA sequenceShow/hide mRNA sequence
ATGACATCTAAGAAAACTTCTTCGAGCAATACCTCTTACACAGGACCGATCACCCGTAGCTGTTCAAAAGAAATCTGGTTAGGAAAAGATCAAACACCTCCAGCTGTTGC
TAAGAAAATACTGCAGCAGATGAAGAAACCTACTCAAGTTGGGGTCGTTATCAAGGAGAATCCTTTGTTCATCGAGTCTGCTCCTTCCTCTGTTCAGTTGGAGAAAATTC
CAGAAATCGATGTGATGTCTGTTATGATGGCCGATGCAAGCAGCACGAAAGAAAGGATGGCTGAAATGGAAAAGAAACTCGCTGCGTGTGATGGAGTGGGTGGCAAGGCT
GAAGGGATGAGAATCTCGGGGCGGAAGCGAATCTTCGTTGCTGATCTTCGGGATACAAAACCGAAATTGAATGAAGGAAAAAATAAAGGAAACTTTACCTTTGAAGAACG
TTTCTTCAATGAGTTTCCCTCGAACACCACCACTATGTCTTCCTCGCTATCCTCTTGGGTCTCGGGATCGTGCTGGTGGGAGCAATCCTTTGGAACGAGAGGGAGAGATT
GA
Protein sequenceShow/hide protein sequence
MTSKKTSSSNTSYTGPITRSCSKEIWLGKDQTPPAVAKKILQQMKKPTQVGVVIKENPLFIESAPSSVQLEKIPEIDVMSVMMADASSTKERMAEMEKKLAACDGVGGKA
EGMRISGRKRIFVADLRDTKPKLNEGKNKGNFTFEERFFNEFPSNTTTMSSSLSSWVSGSCWWEQSFGTRGRD