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Moc07g20180 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g20180
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr7:14557864..14559218
RNA-Seq ExpressionMoc07g20180
SyntenyMoc07g20180
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7115099.1 hypothetical protein RHSIM_RhsimUnG0064500 [Rhododendron simsii]1.2e-0431.3Show/hide
Query:  LMNKQGSALAVEKGKEKVASDDRQQKHSRKDWK--RDDECFHCHRKGHIKKNCRILKEDLKRYMA-------ESNVVVDDA---LICVESNTETGNQSSE
        ++  +G +     G ++  S DR +  SR   K   + ECFHCH+ GH++K CRIL+++LK+          ++  V  D    ++C +       Q   
Subjt:  LMNKQGSALAVEKGKEKVASDDRQQKHSRKDWK--RDDECFHCHRKGHIKKNCRILKEDLKRYMA-------ESNVVVDDA---LICVESNTETGNQSSE

Query:  WVIDSAALVHISSNR
        WVIDS A  H++S R
Subjt:  WVIDSAALVHISSNR

KAF7121453.1 hypothetical protein RHSIM_Rhsim13G0116100 [Rhododendron simsii]2.1e-0431.3Show/hide
Query:  LMNKQGSALAVEKGKEKVASDDRQQKHSRKDWK--RDDECFHCHRKGHIKKNCRILKEDLKRYMA-------ESNVVVDDA---LICVESNTETGNQSSE
        ++  +G +     G ++  S DR +  SR   K   + ECFHCH+ GH++K CRIL+++LK+          ++  V  D    ++C +       Q   
Subjt:  LMNKQGSALAVEKGKEKVASDDRQQKHSRKDWK--RDDECFHCHRKGHIKKNCRILKEDLKRYMA-------ESNVVVDDA---LICVESNTETGNQSSE

Query:  WVIDSAALVHISSNR
        WVIDS A  H++S R
Subjt:  WVIDSAALVHISSNR

KAF7129225.1 hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii]2.7e-0431.3Show/hide
Query:  LMNKQGSALAVEKGKEKVASDDRQQKHSRKDWK--RDDECFHCHRKGHIKKNCRILKEDLKRYMA-------ESNVVVDDA---LICVESNTETGNQSSE
        ++  +G +     G ++  S DR +  SR   K   + ECFHCH+ GH++K CRIL+++LK+          ++  V  D    ++C +       Q   
Subjt:  LMNKQGSALAVEKGKEKVASDDRQQKHSRKDWK--RDDECFHCHRKGHIKKNCRILKEDLKRYMA-------ESNVVVDDA---LICVESNTETGNQSSE

Query:  WVIDSAALVHISSNR
        WVIDS A  H++S R
Subjt:  WVIDSAALVHISSNR

RVW36538.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.7e-0430.07Show/hide
Query:  QSNKLMNKQG-SALAV-----EKGKEKVASDDRQQKHSRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVDDALICVESNTETGNQSSEWV
        +  +L+ +QG SA+ V     +KGK + +   +QQ   + D K+D++CF C +KGH+KK C   +  L++   + N     + +C ESN    N ++ W 
Subjt:  QSNKLMNKQG-SALAV-----EKGKEKVASDDRQQKHSRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVDDALICVESNTETGNQSSEWV

Query:  IDSAALVHISS------NRRLSHLSEDAIATTRSLEDFFKKIRSCCSISFGVF
        IDS + +HIS+      N R    SE  I +   +    + I +C    +G F
Subjt:  IDSAALVHISS------NRRLSHLSEDAIATTRSLEDFFKKIRSCCSISFGVF

RVW67527.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.6e-0428.76Show/hide
Query:  QSNKLMNKQGSALAV------EKGKEKVASDDRQQKHSRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVDDALICVESNTETGNQSSEWV
        +  +LM +QG ++ +      +KGK + +   +QQ   + D K+D++CF C +KGH+KK C   +  L++   + N     + +C ESN    N ++ W 
Subjt:  QSNKLMNKQGSALAV------EKGKEKVASDDRQQKHSRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVDDALICVESNTETGNQSSEWV

Query:  IDSAALVHISS------NRRLSHLSEDAIATTRSLEDFFKKIRSCCSISFGVF
        IDS + +HIS+      N R    SE  I +   +    + I +C    +G F
Subjt:  IDSAALVHISS------NRRLSHLSEDAIATTRSLEDFFKKIRSCCSISFGVF

TrEMBL top hitse value%identityAlignment
A0A438DM59 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-0430.07Show/hide
Query:  QSNKLMNKQG-SALAV-----EKGKEKVASDDRQQKHSRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVDDALICVESNTETGNQSSEWV
        +  +L+ +QG SA+ V     +KGK + +   +QQ   + D K+D++CF C +KGH+KK C   +  L++   + N     + +C ESN    N ++ W 
Subjt:  QSNKLMNKQG-SALAV-----EKGKEKVASDDRQQKHSRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVDDALICVESNTETGNQSSEWV

Query:  IDSAALVHISS------NRRLSHLSEDAIATTRSLEDFFKKIRSCCSISFGVF
        IDS + +HIS+      N R    SE  I +   +    + I +C    +G F
Subjt:  IDSAALVHISS------NRRLSHLSEDAIATTRSLEDFFKKIRSCCSISFGVF

A0A438G5N8 Retrovirus-related Pol polyprotein from transposon TNT 1-947.7e-0528.76Show/hide
Query:  QSNKLMNKQGSALAV------EKGKEKVASDDRQQKHSRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVDDALICVESNTETGNQSSEWV
        +  +LM +QG ++ +      +KGK + +   +QQ   + D K+D++CF C +KGH+KK C   +  L++   + N     + +C ESN    N ++ W 
Subjt:  QSNKLMNKQGSALAV------EKGKEKVASDDRQQKHSRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVDDALICVESNTETGNQSSEWV

Query:  IDSAALVHISS------NRRLSHLSEDAIATTRSLEDFFKKIRSCCSISFGVF
        IDS + +HIS+      N R    SE  I +   +    + I +C    +G F
Subjt:  IDSAALVHISS------NRRLSHLSEDAIATTRSLEDFFKKIRSCCSISFGVF

A0A438GKY6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-0430.07Show/hide
Query:  QSNKLMNKQG-SALAV-----EKGKEKVASDDRQQKHSRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVDDALICVESNTETGNQSSEWV
        +  +L+ +QG SA+ V     +KGK + +   +QQ   + D K+D++CF C +KGH+KK C   +  L++   + N     + +C ESN    N ++ W 
Subjt:  QSNKLMNKQG-SALAV-----EKGKEKVASDDRQQKHSRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVDDALICVESNTETGNQSSEWV

Query:  IDSAALVHISS------NRRLSHLSEDAIATTRSLEDFFKKIRSCCSISFGVF
        IDS + +HIS+      N R    SE  I +   +    + I +C    +G F
Subjt:  IDSAALVHISS------NRRLSHLSEDAIATTRSLEDFFKKIRSCCSISFGVF

A0A6A2YDU0 Uncharacterized protein3.8e-0433.04Show/hide
Query:  KQGSALAVEKGKEKVASDDRQQKH--SRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVD-DALICVESNTETGNQ--SSEWVIDSAALVH
        +Q  AL   +G+          KH  S+   K++ +C+HC +KGH+KK+C  L ++       +N   D DAL C  S T  G +  +  W+IDS A  H
Subjt:  KQGSALAVEKGKEKVASDDRQQKH--SRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVD-DALICVESNTETGNQ--SSEWVIDSAALVH

Query:  ISSNRRLSHLSE
        ++S R   H  E
Subjt:  ISSNRRLSHLSE

A0A6A3AGH5 Serine/threonine kinase5.0e-0433.03Show/hide
Query:  KQGSALAVEKGKEKVASDDRQQKH--SRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVD-DALICVESNTETGNQ--SSEWVIDSAALVH
        +Q   L   +G+        + KH  S+   K++ +C+HC +KGH+KK+C  L ++       +N+  D DAL C  S T  G +  +  W+IDS A  H
Subjt:  KQGSALAVEKGKEKVASDDRQQKH--SRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVD-DALICVESNTETGNQ--SSEWVIDSAALVH

Query:  ISSNRRLSH
        I+S R   H
Subjt:  ISSNRRLSH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCAATAAGTTAATGAATAAACAAGGCTCAGCATTGGCTGTTGAAAAAGGTAAAGAGAAGGTTGCGTCTGATGACAGGCAGCAAAAGCATAGTAGGAAGGATTG
GAAGAGAGATGATGAATGTTTTCATTGCCACAGAAAAGGCCACATCAAGAAAAACTGTAGGATATTAAAAGAGGATCTGAAAAGGTACATGGCAGAGTCAAATGTAGTTG
TAGACGATGCCCTCATCTGTGTTGAAAGCAACACAGAAACAGGAAACCAGTCATCGGAGTGGGTAATAGACAGCGCAGCTTTAGTACACATATCTTCAAATAGAAGATTA
TCACATCTTTCAGAAGATGCAATCGCGACCACGAGAAGTCTTGAAGATTTTTTCAAGAAGATCAGAAGTTGTTGCAGTATAAGTTTTGGAGTTTTCCAAGATTATCAGAG
ACTATTGTTGCAGTGGAAGGCAAGAACGATGTTTTGTCTCCAAGTGGAAGATTGTTGGGATAATGGAGCCAAAATAGATGACTTGTGTCCTACGAGGAAAATGATTTTCA
ACACTACTACCAATTCCTACAAGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCAATAAGTTAATGAATAAACAAGGCTCAGCATTGGCTGTTGAAAAAGGTAAAGAGAAGGTTGCGTCTGATGACAGGCAGCAAAAGCATAGTAGGAAGGATTG
GAAGAGAGATGATGAATGTTTTCATTGCCACAGAAAAGGCCACATCAAGAAAAACTGTAGGATATTAAAAGAGGATCTGAAAAGGTACATGGCAGAGTCAAATGTAGTTG
TAGACGATGCCCTCATCTGTGTTGAAAGCAACACAGAAACAGGAAACCAGTCATCGGAGTGGGTAATAGACAGCGCAGCTTTAGTACACATATCTTCAAATAGAAGATTA
TCACATCTTTCAGAAGATGCAATCGCGACCACGAGAAGTCTTGAAGATTTTTTCAAGAAGATCAGAAGTTGTTGCAGTATAAGTTTTGGAGTTTTCCAAGATTATCAGAG
ACTATTGTTGCAGTGGAAGGCAAGAACGATGTTTTGTCTCCAAGTGGAAGATTGTTGGGATAATGGAGCCAAAATAGATGACTTGTGTCCTACGAGGAAAATGATTTTCA
ACACTACTACCAATTCCTACAAGGAGTAG
Protein sequenceShow/hide protein sequence
MQSNKLMNKQGSALAVEKGKEKVASDDRQQKHSRKDWKRDDECFHCHRKGHIKKNCRILKEDLKRYMAESNVVVDDALICVESNTETGNQSSEWVIDSAALVHISSNRRL
SHLSEDAIATTRSLEDFFKKIRSCCSISFGVFQDYQRLLLQWKARTMFCLQVEDCWDNGAKIDDLCPTRKMIFNTTTNSYKE