CuGenDBv2

Gene ID	Moc07g20210
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Genome location	chr7:14573836..14574219
RNA-Seq Expression	Moc07g20210
Synteny	Moc07g20210
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031722.1 uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa]

1.8e-52

79.84

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Query:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY
        MHL++DAKLWWR+R+VD+QE RCTIDTW+ LK+ELRSQFFPENVEILA RKLREL HTG+IR+YVKQF+GLML+IRDMS+KDKVF FVEGLKPWA+ KLY
Subjt:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY

Query:  EQKVQDIPTAYATAERLFDLSNDT
        EQ+VQD+ +AYA AERLFDLSND+
Subjt:  EQKVQDIPTAYATAERLFDLSNDT

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

1.8e-52

79.84

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Query:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY
        MHL++DAKLWWR+R+VD+QE RCTIDTW+ LK+ELRSQFFPENVEILA RKLREL HTG+IR+YVKQF+GLML+IRDMS+KDKVF FVEGLKPWA+ KLY
Subjt:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY

Query:  EQKVQDIPTAYATAERLFDLSNDT
        EQ+VQD+ +AYA AERLFDLSND+
Subjt:  EQKVQDIPTAYATAERLFDLSNDT

KAA0037573.1 reverse transcriptase [Cucumis melo var. makuwa]

4.7e-53

80.65

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Query:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY
        MHL++DAKLWWR+R+VD+QE RCTIDTW+ LK+ELRSQFFPENVEILA RKLREL HTG+IR+YVKQF+GLML+IRDMS+KDKVF FVEGLKPWA+ KLY
Subjt:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY

Query:  EQKVQDIPTAYATAERLFDLSNDT
        EQ+VQD+ +AYATAERLFDLSND+
Subjt:  EQKVQDIPTAYATAERLFDLSNDT

KAA0051361.1 uncharacterized protein E6C27_scaffold55G00850 [Cucumis melo var. makuwa]

1.8e-52

79.84

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Query:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY
        MHL++DAKLWWR+R+VD+QE RCTIDTW+ LK+ELRSQFFPENVEILA RKLREL HTG+IR+YVKQF+GLML+IRDMS+KDKVF FVEGLKPWA+ KLY
Subjt:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY

Query:  EQKVQDIPTAYATAERLFDLSNDT
        EQ+VQD+ +AYA AERLFDLSND+
Subjt:  EQKVQDIPTAYATAERLFDLSNDT

TYK18566.1 uncharacterized protein E5676_scaffold119G00720 [Cucumis melo var. makuwa]

1.8e-52

79.84

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Query:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY
        MHL++DAKLWWR+R+VD+QE RCTIDTW+ LK+ELRSQFFPENVEILA RKLREL HTG+IR+YVKQF+GLML+IRDMS+KDKVF FVEGLKPWA+ KLY
Subjt:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY

Query:  EQKVQDIPTAYATAERLFDLSNDT
        EQ+VQD+ +AYA AERLFDLSND+
Subjt:  EQKVQDIPTAYATAERLFDLSNDT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T3M3 Reverse transcriptase

2.3e-53

80.65

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Query:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY
        MHL++DAKLWWR+R+VD+QE RCTIDTW+ LK+ELRSQFFPENVEILA RKLREL HTG+IR+YVKQF+GLML+IRDMS+KDKVF FVEGLKPWA+ KLY
Subjt:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY

Query:  EQKVQDIPTAYATAERLFDLSNDT
        EQ+VQD+ +AYATAERLFDLSND+
Subjt:  EQKVQDIPTAYATAERLFDLSNDT

A0A5A7UHT5 Retrotrans_gag domain-containing protein

8.6e-53

79.84

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Query:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY
        MHL++DAKLWWR+R+VD+QE RCTIDTW+ LK+ELRSQFFPENVEILA RKLREL HTG+IR+YVKQF+GLML+IRDMS+KDKVF FVEGLKPWA+ KLY
Subjt:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY

Query:  EQKVQDIPTAYATAERLFDLSNDT
        EQ+VQD+ +AYA AERLFDLSND+
Subjt:  EQKVQDIPTAYATAERLFDLSNDT

A0A5D3BRZ6 Reverse transcriptase

8.6e-53

79.84

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Query:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY
        MHL++DAKLWWR+R+VD+QE RCTIDTW+ LK+ELRSQFFPENVEILA RKLREL HTG+IR+YVKQF+GLML+IRDMS+KDKVF FVEGLKPWA+ KLY
Subjt:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY

Query:  EQKVQDIPTAYATAERLFDLSNDT
        EQ+VQD+ +AYA AERLFDLSND+
Subjt:  EQKVQDIPTAYATAERLFDLSNDT

A0A5D3C4R1 Reverse transcriptase

8.6e-53

79.84

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Query:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY
        MHL++DAKLWWR+R+VD+QE RCTIDTW+ LK+ELRSQFFPENVEILA RKLREL HTG+IR+YVKQF+GLML+IRDMS+KDKVF FVEGLKPWA+ KLY
Subjt:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY

Query:  EQKVQDIPTAYATAERLFDLSNDT
        EQ+VQD+ +AYA AERLFDLSND+
Subjt:  EQKVQDIPTAYATAERLFDLSNDT

A0A5D3DQ20 Retrotrans_gag domain-containing protein

8.6e-53

79.84

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Query:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY
        MHL++DAKLWWR+R+VD+QE RCTIDTW+ LK+ELRSQFFPENVEILA RKLREL HTG+IR+YVKQF+GLML+IRDMS+KDKVF FVEGLKPWA+ KLY
Subjt:  MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLY

Query:  EQKVQDIPTAYATAERLFDLSNDT
        EQ+VQD+ +AYA AERLFDLSND+
Subjt:  EQKVQDIPTAYATAERLFDLSNDT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCATCTTGCTGACGATGCGAAGTTGTGGTGGAGAGCAAGATATGTAGATTTACAAGAGGACAGATGTACCATCGACACGTGGGAAAAACTAAAGCAGGAACTCAGATC
CCAATTTTTCCCGGAGAATGTAGAGATCCTTGCCTGCCGTAAACTGCGTGAATTGGGTCACACAGGAAATATTCGAGACTATGTGAAGCAGTTTTCAGGGTTGATGTTGA
ATATCCGTGATATGTCCAAGAAAGACAAGGTCTTCGCCTTTGTGGAGGGCTTGAAACCATGGGCCCGGGCCAAATTGTATGAACAGAAGGTACAAGATATCCCTACTGCT
TACGCAACAGCCGAACGACTGTTTGATCTTAGCAACGATACACCACAAGAGTAG

mRNA sequence

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Protein sequence

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MHLADDAKLWWRARYVDLQEDRCTIDTWEKLKQELRSQFFPENVEILACRKLRELGHTGNIRDYVKQFSGLMLNIRDMSKKDKVFAFVEGLKPWARAKLYEQKVQDIPTA
YATAERLFDLSNDTPQE

Moc07g20210 (gene) of Bitter gourd (OHB3-1) v2 genome