CuGenDBv2

Gene ID	Moc07g20250
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Genome location	chr7:14577266..14577745
RNA-Seq Expression	Moc07g20250
Synteny	Moc07g20250
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

1.3e-65

78.98

Show/hide

Query:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL
        +LDVAQFCFN Q S+ TGR+ FEIV GRQPVLPH+VDHP+ GK+ QA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+A DQVL+KLRPEQ+
Subjt:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL

Query:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD
        RFRG KDQRLVRKYEGPV VL+KVG TSYRV LP WMKI+PVIHVSNLK YH DT D
Subjt:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD

KAA0053389.1 reverse transcriptase [Cucumis melo var. makuwa]

1.0e-65

78.98

Show/hide

Query:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL
        +LDVAQFCFN Q S+ TGR+ FEIV GRQPVLPH+VDHP+ GK+ QA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+A DQVL+KLRPEQ+
Subjt:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL

Query:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD
        RFRG KDQRLVRKYEGPV VL+KVG TSYRV LP WMKI+PVIHVSNLK YH DT D
Subjt:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]

1.3e-65

78.98

Show/hide

Query:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL
        +LDVAQFCFN Q S+ TGR+ FEIV GRQPVLPH+VDHP+ GK+ QA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+A DQVL+KLRPEQ+
Subjt:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL

Query:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD
        RFRG KDQRLVRKYEGPV VL+KVG TSYRV LP WMKI+PVIHVSNLK YH DT D
Subjt:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

1.3e-65

78.98

Show/hide

Query:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL
        +LDVAQFCFN Q S+ TGR+ FEIV GRQPVLPH+VDHP+ GK+ QA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+A DQVL+KLRPEQ+
Subjt:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL

Query:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD
        RFRG KDQRLVRKYEGPV VL+KVG TSYRV LP WMKI+PVIHVSNLK YH DT D
Subjt:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]

1.3e-65

78.98

Show/hide

Query:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL
        +LDVAQFCFN Q S+ TGR+ FEIV GRQPVLPH+VDHP+ GK+ QA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+A DQVL+KLRPEQ+
Subjt:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL

Query:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD
        RFRG KDQRLVRKYEGPV VL+KVG TSYRV LP WMKI+PVIHVSNLK YH DT D
Subjt:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UIU9 Reverse transcriptase

5.0e-66

78.98

Show/hide

Query:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL
        +LDVAQFCFN Q S+ TGR+ FEIV GRQPVLPH+VDHP+ GK+ QA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+A DQVL+KLRPEQ+
Subjt:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL

Query:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD
        RFRG KDQRLVRKYEGPV VL+KVG TSYRV LP WMKI+PVIHVSNLK YH DT D
Subjt:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD

A0A5A7UXR6 Reverse transcriptase

6.5e-66

78.98

Show/hide

Query:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL
        +LDVAQFCFN Q S+ TGR+ FEIV GRQPVLPH+VDHP+ GK+ QA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+A DQVL+KLRPEQ+
Subjt:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL

Query:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD
        RFRG KDQRLVRKYEGPV VL+KVG TSYRV LP WMKI+PVIHVSNLK YH DT D
Subjt:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD

A0A5D3BRZ6 Reverse transcriptase

6.5e-66

78.98

Show/hide

Query:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL
        +LDVAQFCFN Q S+ TGR+ FEIV GRQPVLPH+VDHP+ GK+ QA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+A DQVL+KLRPEQ+
Subjt:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL

Query:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD
        RFRG KDQRLVRKYEGPV VL+KVG TSYRV LP WMKI+PVIHVSNLK YH DT D
Subjt:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD

A0A5D3C4R1 Reverse transcriptase

6.5e-66

78.98

Show/hide

Query:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL
        +LDVAQFCFN Q S+ TGR+ FEIV GRQPVLPH+VDHP+ GK+ QA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+A DQVL+KLRPEQ+
Subjt:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL

Query:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD
        RFRG KDQRLVRKYEGPV VL+KVG TSYRV LP WMKI+PVIHVSNLK YH DT D
Subjt:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD

A0A5D3DBE0 Reverse transcriptase

6.5e-66

78.98

Show/hide

Query:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL
        +LDVAQFCFN Q S+ TGR+ FEIV GRQPVLPH+VDHP+ GK+ QA NFTKEWRQ+ ++ARAYLEKASK MKKWADKKRRPLEF+A DQVL+KLRPEQ+
Subjt:  MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQL

Query:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD
        RFRG KDQRLVRKYEGPV VL+KVG TSYRV LP WMKI+PVIHVSNLK YH DT D
Subjt:  RFRGNKDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

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ATGCTCGATGTAGCTCAATTCTGTTTCAATTGCCAAAAGAGCACCATCACGGGAAGAACCCTTTTCGAAATCGTATGCGGGCGACAACCTGTGTTACCTCATGTT
GTCGACCATCCTTATGTGGGCAAGAGTTCTCAAGCCTACAACTTCACTAAGGAATGGCGTCAATCCACCGAAGTGGCCCGAGCATACCTAGAGAAGGCGTCTAAA
CACATGAAAAAGTGGGCAGACAAAAAGCGAAGGCCATTAGAATTCCAGGCAAGAGATCAAGTCCTTGTGAAGCTGAGACCTGAACAACTTCGCTTTCGAGGTAAC
AAAGACCAACGCCTTGTGCGAAAATATGAAGGACCCGTCAACGTCCTTCAGAAGGTGGGCAAGACATCCTATAGGGTTCAACTACCCCCGTGGATGAAAATCCAT
CCAGTAATCCACGTGAGCAACTTGAAGTCTTACCACCCCGACACCGTCGACCCTACATGA

mRNA sequence

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Protein sequence

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MLDVAQFCFNCQKSTITGRTLFEIVCGRQPVLPHVVDHPYVGKSSQAYNFTKEWRQSTEVARAYLEKASKHMKKWADKKRRPLEFQARDQVLVKLRPEQLRFRGN
KDQRLVRKYEGPVNVLQKVGKTSYRVQLPPWMKIHPVIHVSNLKSYHPDTVDPT

Moc07g20250 (gene) of Bitter gourd (OHB3-1) v2 genome