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Moc07g20530 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g20530
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr7:14804013..14813013
RNA-Seq ExpressionMoc07g20530
SyntenyMoc07g20530
Gene Ontology termsGO:0016829 - lyase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]8.2e-2463.16Show/hide
Query:  SSASCVDHLPLKTLAILPSLELALSGLMKYNSQLNDLQLLHGNHSGLAGRTTLDKVAAMVLRADEFMGTVDGLYIIVSSAF-LLELVGLSWKAELHVMNY
        SSAS VDHLPLKTLAI+PSLELAL  L+KY+SQLNDLQLLHGNHS  A    +  +   +L ++E       L ++VS  +   ELVGLSWKAEL VMNY
Subjt:  SSASCVDHLPLKTLAILPSLELALSGLMKYNSQLNDLQLLHGNHSGLAGRTTLDKVAAMVLRADEFMGTVDGLYIIVSSAF-LLELVGLSWKAELHVMNY

Query:  AGGSPLLTDKEDNG
        AGGSPLLTDKE+ G
Subjt:  AGGSPLLTDKEDNG
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]1.5e-1772.37Show/hide
Query:  SSASCVDHLPLKTLAILPSLELALSGLMKYNSQLNDLQLLHGNHSGLAGRTTLDKVAAMVLRADEFMGTVDGLYII
        SSASC+ HLPLKTLAILPSLELA+  L+KY+SQLNDLQLL GNHSGLAGRTT DKV A+ LR  E    +D L II
Subjt:  SSASCVDHLPLKTLAILPSLELALSGLMKYNSQLNDLQLLHGNHSGLAGRTTLDKVAAMVLRADEFMGTVDGLYII
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like4.0e-2463.16Show/hide
Query:  SSASCVDHLPLKTLAILPSLELALSGLMKYNSQLNDLQLLHGNHSGLAGRTTLDKVAAMVLRADEFMGTVDGLYIIVSSAF-LLELVGLSWKAELHVMNY
        SSAS VDHLPLKTLAI+PSLELAL  L+KY+SQLNDLQLLHGNHS  A    +  +   +L ++E       L ++VS  +   ELVGLSWKAEL VMNY
Subjt:  SSASCVDHLPLKTLAILPSLELALSGLMKYNSQLNDLQLLHGNHSGLAGRTTLDKVAAMVLRADEFMGTVDGLYIIVSSAF-LLELVGLSWKAELHVMNY

Query:  AGGSPLLTDKEDNG
        AGGSPLLTDKE+ G
Subjt:  AGGSPLLTDKEDNG
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein7.2e-1872.37Show/hide
Query:  SSASCVDHLPLKTLAILPSLELALSGLMKYNSQLNDLQLLHGNHSGLAGRTTLDKVAAMVLRADEFMGTVDGLYII
        SSASC+ HLPLKTLAILPSLELA+  L+KY+SQLNDLQLL GNHSGLAGRTT DKV A+ LR  E    +D L II
Subjt:  SSASCVDHLPLKTLAILPSLELALSGLMKYNSQLNDLQLLHGNHSGLAGRTTLDKVAAMVLRADEFMGTVDGLYII
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTGTGATTGGTCACCTAAAAATAAAGACAAGGTCTGCGAAAATAGATTGTTGGTTCGGGAGTCGACTGAACGTAGGGAAGGTGTTAGCACCCTACGATACCCGTT
CGAAAACGGAAGTTCTGGGTGTGCCCGCGAGTCTGAAACCGTGAAGGAGCACTCGAGTCTGTGTACCGTCGGGGTCGCCGGCCTGGGTGAAGAAGAAGAGAAAGTGATGG
TAGAGAGAAAGAAGGAAGTGAATTTTTCTCCGTCTTCTCTAACTAAAAGGGTAGACAAAGGCAAAAGACAAAGTATTTGGGAAGGCGAAAATTTTATTCAGACAAGACAA
GATAGAGATGGACCTAGCTGGACACTAGGCGGGATCCCGACATGCAAAGAACCCCGCTTCGACCTCGATTTGGATCGGGTTCGATTTAATCGAATGATAAAATGCAACGG
ACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGGTCTCTGACAGGATTCCTGATAAGGCCTCAACGGCCATTTAAGGTAAGCTTGAATCACGACATGCTAT
CGTGGAGTTTGTCGGAATATGAGGCTAAGCGAGACACATCTAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCTGCCTTCATTAGAACTTGCACTT
TCTGGTTTAATGAAGTACAATTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGTGGACTTGCGGGTCGTACCACTTTGGATAAGGTGGCTGCAATGGTTCT
CAGAGCCGATGAGTTTATGGGTACTGTAGACGGATTGTATATCATAGTTTCTTCAGCATTTCTGTTGGAGCTTGTTGGCCTTTCTTGGAAAGCTGAGCTTCATGTGATGA
ATTATGCTGGGGGAAGCCCTCTATTGACTGACAAAGAGGATAATGGCCCTCAAATCTTCCATATGCTTTGCCAGTATGGTCGACTTGAGTGGAGAATTCCATGCGCCTGC
ACGGGAACCGAAATTCCACGAAGGTCACACTACTCAGTCTCCAATCTAATCCAAAAGGTAAAGCCCAGTCTGTGTATCGTCGGGCTCATCGGCCTGGGTGAAGAAGAAGA
GAAGGTGATGGTAGAGAGAAAGAAGGAAGTGAATTTTTCTCCGTCTTCTCTATATGGTGTTCTAAAGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTGTGATTGGTCACCTAAAAATAAAGACAAGGTCTGCGAAAATAGATTGTTGGTTCGGGAGTCGACTGAACGTAGGGAAGGTGTTAGCACCCTACGATACCCGTT
CGAAAACGGAAGTTCTGGGTGTGCCCGCGAGTCTGAAACCGTGAAGGAGCACTCGAGTCTGTGTACCGTCGGGGTCGCCGGCCTGGGTGAAGAAGAAGAGAAAGTGATGG
TAGAGAGAAAGAAGGAAGTGAATTTTTCTCCGTCTTCTCTAACTAAAAGGGTAGACAAAGGCAAAAGACAAAGTATTTGGGAAGGCGAAAATTTTATTCAGACAAGACAA
GATAGAGATGGACCTAGCTGGACACTAGGCGGGATCCCGACATGCAAAGAACCCCGCTTCGACCTCGATTTGGATCGGGTTCGATTTAATCGAATGATAAAATGCAACGG
ACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGGTCTCTGACAGGATTCCTGATAAGGCCTCAACGGCCATTTAAGGTAAGCTTGAATCACGACATGCTAT
CGTGGAGTTTGTCGGAATATGAGGCTAAGCGAGACACATCTAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCTGCCTTCATTAGAACTTGCACTT
TCTGGTTTAATGAAGTACAATTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGTGGACTTGCGGGTCGTACCACTTTGGATAAGGTGGCTGCAATGGTTCT
CAGAGCCGATGAGTTTATGGGTACTGTAGACGGATTGTATATCATAGTTTCTTCAGCATTTCTGTTGGAGCTTGTTGGCCTTTCTTGGAAAGCTGAGCTTCATGTGATGA
ATTATGCTGGGGGAAGCCCTCTATTGACTGACAAAGAGGATAATGGCCCTCAAATCTTCCATATGCTTTGCCAGTATGGTCGACTTGAGTGGAGAATTCCATGCGCCTGC
ACGGGAACCGAAATTCCACGAAGGTCACACTACTCAGTCTCCAATCTAATCCAAAAGGTAAAGCCCAGTCTGTGTATCGTCGGGCTCATCGGCCTGGGTGAAGAAGAAGA
GAAGGTGATGGTAGAGAGAAAGAAGGAAGTGAATTTTTCTCCGTCTTCTCTATATGGTGTTCTAAAGTGGTGA
Protein sequenceShow/hide protein sequence
MRCDWSPKNKDKVCENRLLVRESTERREGVSTLRYPFENGSSGCARESETVKEHSSLCTVGVAGLGEEEEKVMVERKKEVNFSPSSLTKRVDKGKRQSIWEGENFIQTRQ
DRDGPSWTLGGIPTCKEPRFDLDLDRVRFNRMIKCNGPGFNNRLRPRLGSGSLTGFLIRPQRPFKVSLNHDMLSWSLSEYEAKRDTSSASCVDHLPLKTLAILPSLELAL
SGLMKYNSQLNDLQLLHGNHSGLAGRTTLDKVAAMVLRADEFMGTVDGLYIIVSSAFLLELVGLSWKAELHVMNYAGGSPLLTDKEDNGPQIFHMLCQYGRLEWRIPCAC
TGTEIPRRSHYSVSNLIQKVKPSLCIVGLIGLGEEEEKVMVERKKEVNFSPSSLYGVLKW