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Moc07g20640 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g20640
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr7:14921572..14927747
RNA-Seq ExpressionMoc07g20640
SyntenyMoc07g20640
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039052.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.9e-1254.44Show/hide
Query:  ENPKNRCDVCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV
        E P       +  D  + + RM E+E K+  LMK VEERDYEIASLKN IE+RD   SS T T    +KGKTI QE+Q Q S+SIASLFV
Subjt:  ENPKNRCDVCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV

KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.9e-1248.57Show/hide
Query:  PAAPQAFEFGENPKNRCD-----VCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSI
        PA  + + F E+             +V D  + E RM E+E K+  LMK VEERDYEIASLKN IE+RD   SS   T+K  DKGK + QE+Q Q S+SI
Subjt:  PAAPQAFEFGENPKNRCD-----VCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSI

Query:  ASLFV
        ASL V
Subjt:  ASLFV

TYJ99754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-1258.75Show/hide
Query:  LVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV
        +  D  + + RM E+E K+  LMK VEERDYEIASLKN IE+RD   SS T T K  +KGKTI QE+Q Q S+S+ASLFV
Subjt:  LVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV

TYK18586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-1254.44Show/hide
Query:  ENPKNRCDVCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV
        E P+      +V D    E+RMAE+E K+  LMK VEERDYEIA LKN IE+RD   SS   T+K  DKGK + QE+Q Q S+SIASL V
Subjt:  ENPKNRCDVCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV

TYK19797.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-1260Show/hide
Query:  LVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV
        +V D  + E RMAE+E K+  LMK VEERDYEIA LKN IE+RD  GSS   T+K  DKGK + QE+Q Q S+SIASL V
Subjt:  LVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV

TrEMBL top hitse value%identityAlignment
A0A5A7T6D4 Ty3-gypsy retrotransposon protein2.4e-1254.44Show/hide
Query:  ENPKNRCDVCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV
        E P       +  D  + + RM E+E K+  LMK VEERDYEIASLKN IE+RD   SS T T    +KGKTI QE+Q Q S+SIASLFV
Subjt:  ENPKNRCDVCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV

A0A5D3BL51 Ty3-gypsy retrotransposon protein1.8e-1258.75Show/hide
Query:  LVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV
        +  D  + + RM E+E K+  LMK VEERDYEIASLKN IE+RD   SS T T K  +KGKTI QE+Q Q S+S+ASLFV
Subjt:  LVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV

A0A5D3C4W1 Ty3-gypsy retrotransposon protein2.4e-1248.57Show/hide
Query:  PAAPQAFEFGENPKNRCD-----VCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSI
        PA  + + F E+             +V D  + E RM E+E K+  LMK VEERDYEIASLKN IE+RD   SS   T+K  DKGK + QE+Q Q S+SI
Subjt:  PAAPQAFEFGENPKNRCD-----VCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSI

Query:  ASLFV
        ASL V
Subjt:  ASLFV

A0A5D3D4X3 Ty3-gypsy retrotransposon protein1.8e-1254.44Show/hide
Query:  ENPKNRCDVCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV
        E P+      +V D    E+RMAE+E K+  LMK VEERDYEIA LKN IE+RD   SS   T+K  DKGK + QE+Q Q S+SIASL V
Subjt:  ENPKNRCDVCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV

A0A5D3D8A2 Ty3-gypsy retrotransposon protein8.1e-1360Show/hide
Query:  LVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV
        +V D  + E RMAE+E K+  LMK VEERDYEIA LKN IE+RD  GSS   T+K  DKGK + QE+Q Q S+SIASL V
Subjt:  LVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQSQYSSSIASLFV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAAGACAAATAACCAGCCAACTATTATGTATGCCTTAGATGCGCTTTCCGAACAGGCTATATTGCTTTATATCTTTGTCTTTTCCGTCCTCACGGGCTGGGCTCT
CACGTGTCTGGGGTGCTTTATTGCCCTTTCTATTTATTTAATTAAAGCAATTAGGAGCCAATCTTCAACAGGAGCATCTCGATGTTTGCTAGGGGTGCTCCTGAGTGTTG
ATGCCCCTTCACCAACAATTTTGTTTCGTGGCTCGATATGGAATGAACTTCTAATCATTGAATTGACTCGATCATCAGCATTTTTGGAGGATTCGTTCCCTGGTCCTGTG
GTTGAGAAGCCTCAAGCTCCACCTCTTTCGTCCTTCTATCTACGCAATTCTCTGTCTTCGTTCGCAAAGGAGGCTCGAGGGCTTGTAAAACCGGCCGAAACCCCTGCTTT
TGCTGTTACCTACGTAGGGAGAACACCGGTTGACTTTTCAACCTCTGAGAGGAAAACTAGGGATTCTCGCATAATCAGGGGAGTAAAGTCCCAAGGAAATCAAGGTCGCA
GCCCTCTATTGAACAACCAGCACTTGCACCTCGCTCTTCTAATAATAAAAAGCAGCCAGCCTGCCGTTCCCTTCTCTGTCAATCCACTACGGGTTGGGTCGGCCTCATTT
CATAGAAAACCTCAAAGTGGCTCTATTTCTTTCATTATATTTCATCCATATCTCGAAGAGAGGAAAGAGCGAGATGGTTGTTTTTGTTGTTCCCACGAAACGAAGATCAT
TCGCTTGGCAGGCGACGCCAAAAAGTCGTCTCGTGCAGGAGCGAAGCTGCTTTACCGAGTTTACCTCTCTTTCGCGCTAGAGAGAGAACCCGAAGATAGACTTGTTCTTA
TGGCTCTCTCATCCATGATTGATAGGGGATTGGCTCCGAGTGTAGATAGAGTCAAATCTGCCATTTCGAACTTTATACAGAAGGTTTTCCTTCGTTTTTTTCCTCTTTCT
CTATCTTTATCTCGCGGCAAGAAGTGCACATTCGAGTCCGCCGTCCCACGGCTTTCCCTTTTGCCGGCTGCTCCTCAAGCCTTTGAGTTTGGAGAAAATCCCAAAAATCG
ATGTGATGTCTGTTTGGTGGCTGATGCAAGCAGCATAGAAGAAAGGATGGCTGAAATGGAAATGAAACTCGCTGCACTTATGAAAACAGTGGAAGAAAGAGACTATGAAA
TCGCTTCCCTAAAGAATCAGATTGAAAACAGAGATAATGTTGGGTCGAGTCAAACCCCTACTCTCAAGATAAATGACAAAGGAAAGACTATCGCTCAAGAAAATCAATCG
CAATATTCCAGTTCGATCGCTTCGCTGTTTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAAGACAAATAACCAGCCAACTATTATGTATGCCTTAGATGCGCTTTCCGAACAGGCTATATTGCTTTATATCTTTGTCTTTTCCGTCCTCACGGGCTGGGCTCT
CACGTGTCTGGGGTGCTTTATTGCCCTTTCTATTTATTTAATTAAAGCAATTAGGAGCCAATCTTCAACAGGAGCATCTCGATGTTTGCTAGGGGTGCTCCTGAGTGTTG
ATGCCCCTTCACCAACAATTTTGTTTCGTGGCTCGATATGGAATGAACTTCTAATCATTGAATTGACTCGATCATCAGCATTTTTGGAGGATTCGTTCCCTGGTCCTGTG
GTTGAGAAGCCTCAAGCTCCACCTCTTTCGTCCTTCTATCTACGCAATTCTCTGTCTTCGTTCGCAAAGGAGGCTCGAGGGCTTGTAAAACCGGCCGAAACCCCTGCTTT
TGCTGTTACCTACGTAGGGAGAACACCGGTTGACTTTTCAACCTCTGAGAGGAAAACTAGGGATTCTCGCATAATCAGGGGAGTAAAGTCCCAAGGAAATCAAGGTCGCA
GCCCTCTATTGAACAACCAGCACTTGCACCTCGCTCTTCTAATAATAAAAAGCAGCCAGCCTGCCGTTCCCTTCTCTGTCAATCCACTACGGGTTGGGTCGGCCTCATTT
CATAGAAAACCTCAAAGTGGCTCTATTTCTTTCATTATATTTCATCCATATCTCGAAGAGAGGAAAGAGCGAGATGGTTGTTTTTGTTGTTCCCACGAAACGAAGATCAT
TCGCTTGGCAGGCGACGCCAAAAAGTCGTCTCGTGCAGGAGCGAAGCTGCTTTACCGAGTTTACCTCTCTTTCGCGCTAGAGAGAGAACCCGAAGATAGACTTGTTCTTA
TGGCTCTCTCATCCATGATTGATAGGGGATTGGCTCCGAGTGTAGATAGAGTCAAATCTGCCATTTCGAACTTTATACAGAAGGTTTTCCTTCGTTTTTTTCCTCTTTCT
CTATCTTTATCTCGCGGCAAGAAGTGCACATTCGAGTCCGCCGTCCCACGGCTTTCCCTTTTGCCGGCTGCTCCTCAAGCCTTTGAGTTTGGAGAAAATCCCAAAAATCG
ATGTGATGTCTGTTTGGTGGCTGATGCAAGCAGCATAGAAGAAAGGATGGCTGAAATGGAAATGAAACTCGCTGCACTTATGAAAACAGTGGAAGAAAGAGACTATGAAA
TCGCTTCCCTAAAGAATCAGATTGAAAACAGAGATAATGTTGGGTCGAGTCAAACCCCTACTCTCAAGATAAATGACAAAGGAAAGACTATCGCTCAAGAAAATCAATCG
CAATATTCCAGTTCGATCGCTTCGCTGTTTGTTTAG
Protein sequenceShow/hide protein sequence
MRKTNNQPTIMYALDALSEQAILLYIFVFSVLTGWALTCLGCFIALSIYLIKAIRSQSSTGASRCLLGVLLSVDAPSPTILFRGSIWNELLIIELTRSSAFLEDSFPGPV
VEKPQAPPLSSFYLRNSLSSFAKEARGLVKPAETPAFAVTYVGRTPVDFSTSERKTRDSRIIRGVKSQGNQGRSPLLNNQHLHLALLIIKSSQPAVPFSVNPLRVGSASF
HRKPQSGSISFIIFHPYLEERKERDGCFCCSHETKIIRLAGDAKKSSRAGAKLLYRVYLSFALEREPEDRLVLMALSSMIDRGLAPSVDRVKSAISNFIQKVFLRFFPLS
LSLSRGKKCTFESAVPRLSLLPAAPQAFEFGENPKNRCDVCLVADASSIEERMAEMEMKLAALMKTVEERDYEIASLKNQIENRDNVGSSQTPTLKINDKGKTIAQENQS
QYSSSIASLFV