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Moc07g20780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g20780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr7:15101586..15107589
RNA-Seq ExpressionMoc07g20780
SyntenyMoc07g20780
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]2.3e-2456.12Show/hide
Query:  LALALKCRSSRASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCLAL
        + + L    S AS V+HLPLKTLAI PSLE ALYALVKYSSQLNDLQLLHGNHS  A         V+ L +                +ILGS+ES L L
Subjt:  LALALKCRSSRASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCLAL

Query:  VASDYYDCQ-------KAELHVMNYAEGRPLLTDKEDNG
        V SDYYDCQ       KAEL VMNYA G PLLTDKE+ G
Subjt:  VASDYYDCQ-------KAELHVMNYAEGRPLLTDKEDNG
XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]8.9e-3273.83Show/hide
Query:  LALALKCRSSRASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCLAL
        + + L    S ASC++HLPLKTLAI PSLE A+YALVKYSSQLNDLQLL GNHSGLAG TT DKVV +AL+V ELIDY+EII ITT+ +ILGSD S LAL
Subjt:  LALALKCRSSRASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCLAL

Query:  VASDYYD
        VASDYYD
Subjt:  VASDYYD
TrEMBL top hitse value%identityAlignment
A0A6J1CQG9 (-)-germacrene D synthase-like1.1e-2456.12Show/hide
Query:  LALALKCRSSRASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCLAL
        + + L    S AS V+HLPLKTLAI PSLE ALYALVKYSSQLNDLQLLHGNHS  A         V+ L +                +ILGS+ES L L
Subjt:  LALALKCRSSRASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCLAL

Query:  VASDYYDCQ-------KAELHVMNYAEGRPLLTDKEDNG
        V SDYYDCQ       KAEL VMNYA G PLLTDKE+ G
Subjt:  VASDYYDCQ-------KAELHVMNYAEGRPLLTDKEDNG
A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein4.3e-3273.83Show/hide
Query:  LALALKCRSSRASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCLAL
        + + L    S ASC++HLPLKTLAI PSLE A+YALVKYSSQLNDLQLL GNHSGLAG TT DKVV +AL+V ELIDY+EII ITT+ +ILGSD S LAL
Subjt:  LALALKCRSSRASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCLAL

Query:  VASDYYD
        VASDYYD
Subjt:  VASDYYD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATCACAAAAAATACGAAGCTTACGAGCTCGGTTTGGATGGAATGATGACCTTTAGGATTAGCTGGATTTTGCTGAGGAGGAGACTTGCAAGAGAAAACACTCC
GAAGCCCAAGCACCCGACCAGGCCTCAACGGCTCTTTAAGGTAAGTAAGAATTACGGCGTGCTGTCGTGGAGTTTGTTGAAATATGTGGCTAAGCAAGACACTACTAGGT
CGGTTCAAACAAAGAATGGGAACGAGACCAAAGGAGACATGGTTGGCTCGGCCATAACGGGCGTTGGCTCGGTAGACAGTGGAAGTACCGAGGTAAAGATCTTTTTAGCT
TTAGCTCTAAAGTGCCGTTCTTCACGTGCTTCATGTGTGAACCATCTTCCTTTGAAAACTTTAGCCATCCCACCTTCATTAGAACCTGCACTTTATGCTTTAGTGAAGTA
CAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGCGGACTTGCGGGTCATACCACTTTGGATAAGGTGGTCGTAATGGCTCTACAGGTACTGGAGCTAA
TAGATTACATTGAAATAATTGAGATAACAACTAGGTATAAGATATTGGGATCGGATGAAAGCTGTCTTGCTTTAGTTGCCTCCGACTATTATGATTGTCAGAAAGCTGAG
CTTCATGTGATGAATTATGCTGAGGGACGCCCTCTATTGACTGACAAGGAGGATAATGGCCCACAAATCTTCCATATGCTTTGGCAGTATGGTCAACTTGAGTGGAGAAT
TTCATGCGCCTACACGGGAACCGAAATTCCACAAAGGTCACACTACTCAGTCTCCGATCTAATCCTAAACGGTAAAGCCGGGTCCCCAGCGGAATCGCCAAGCTGTCGCA
ACGTCATCGCGACGCGGAGCGACCGACGTCATCCCCTGAAGGGTCTCTTTCGAGATAAGGGTTTGGAGTCGCCACCAATCATCTACGAGGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGATCACAAAAAATACGAAGCTTACGAGCTCGGTTTGGATGGAATGATGACCTTTAGGATTAGCTGGATTTTGCTGAGGAGGAGACTTGCAAGAGAAAACACTCC
GAAGCCCAAGCACCCGACCAGGCCTCAACGGCTCTTTAAGGTAAGTAAGAATTACGGCGTGCTGTCGTGGAGTTTGTTGAAATATGTGGCTAAGCAAGACACTACTAGGT
CGGTTCAAACAAAGAATGGGAACGAGACCAAAGGAGACATGGTTGGCTCGGCCATAACGGGCGTTGGCTCGGTAGACAGTGGAAGTACCGAGGTAAAGATCTTTTTAGCT
TTAGCTCTAAAGTGCCGTTCTTCACGTGCTTCATGTGTGAACCATCTTCCTTTGAAAACTTTAGCCATCCCACCTTCATTAGAACCTGCACTTTATGCTTTAGTGAAGTA
CAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGCGGACTTGCGGGTCATACCACTTTGGATAAGGTGGTCGTAATGGCTCTACAGGTACTGGAGCTAA
TAGATTACATTGAAATAATTGAGATAACAACTAGGTATAAGATATTGGGATCGGATGAAAGCTGTCTTGCTTTAGTTGCCTCCGACTATTATGATTGTCAGAAAGCTGAG
CTTCATGTGATGAATTATGCTGAGGGACGCCCTCTATTGACTGACAAGGAGGATAATGGCCCACAAATCTTCCATATGCTTTGGCAGTATGGTCAACTTGAGTGGAGAAT
TTCATGCGCCTACACGGGAACCGAAATTCCACAAAGGTCACACTACTCAGTCTCCGATCTAATCCTAAACGGTAAAGCCGGGTCCCCAGCGGAATCGCCAAGCTGTCGCA
ACGTCATCGCGACGCGGAGCGACCGACGTCATCCCCTGAAGGGTCTCTTTCGAGATAAGGGTTTGGAGTCGCCACCAATCATCTACGAGGTGTGA
Protein sequenceShow/hide protein sequence
MFDHKKYEAYELGLDGMMTFRISWILLRRRLARENTPKPKHPTRPQRLFKVSKNYGVLSWSLLKYVAKQDTTRSVQTKNGNETKGDMVGSAITGVGSVDSGSTEVKIFLA
LALKCRSSRASCVNHLPLKTLAIPPSLEPALYALVKYSSQLNDLQLLHGNHSGLAGHTTLDKVVVMALQVLELIDYIEIIEITTRYKILGSDESCLALVASDYYDCQKAE
LHVMNYAEGRPLLTDKEDNGPQIFHMLWQYGQLEWRISCAYTGTEIPQRSHYSVSDLILNGKAGSPAESPSCRNVIATRSDRRHPLKGLFRDKGLESPPIIYEV