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Moc07g20890 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g20890
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr7:15196944..15198181
RNA-Seq ExpressionMoc07g20890
SyntenyMoc07g20890
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]4.1e-5849.49Show/hide
Query:  KQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWE
        ++R TESLHDYV RFN+EKLQVEGLTDAV+LLAF+ G++DEHL FSFGK+T S+F++ALSRAQ+YMSAGEFF+SK+E   KR DQK ERS +KP  S+WE
Subjt:  KQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWE

Query:  K-----------------------------------------------------------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMEN
        K                                                           DHGHAT DCFDLKEEVEGLI +GYLKEYV+  KAT N E+
Subjt:  K-----------------------------------------------------------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMEN

Query:  DNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV------------------------------------ANTKVHQILVDGGSSADIIS
        D KSPAREIRTIM G  E++S RKRK  V EAR   EQ EV                                    AN +VH+ILVDGGSSADIIS
Subjt:  DNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV------------------------------------ANTKVHQILVDGGSSADIIS

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]2.0e-5780.13Show/hide
Query:  SFTLGGSARVWFRQLKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKK
        S TL GSARVWFRQLKRGSISSFKSLA+ FVTQ IGGR+RSRP AYLLTIKQR TESLHDYVARFNEEKLQVEGLT+AV+L+AFMS I+DEHL FSFGKK
Subjt:  SFTLGGSARVWFRQLKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKK

Query:  TLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK
        T S+F++ALSRAQKYMSAGEFF SK+EPE K++DQ  ERS +KP  S+WEK
Subjt:  TLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK

XP_022150104.1 uncharacterized protein LOC111018365 [Momordica charantia]2.8e-6256.49Show/hide
Query:  QRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK
        QR  ESLH+YVARFNEEKLQVEGLTD V+LLAFMSG++DEHL FSF KKT S+F++ LSRAQ+YMSAGEFF+SK+EP+ KR DQK ERS +KP  S+WEK
Subjt:  QRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK

Query:  -------------------------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARID
                                 DHGHAT DCFDLKEEV+GLIR GYLKEYV++ KAT N E+D KSPAREIRTI+ G  E++S RK KA V EAR +
Subjt:  -------------------------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARID

Query:  LEQYEV------------------------------------ANTKVHQILVDGGSSADIIS
         +Q EV                                    AN KVH+ILVDGGSSADIIS
Subjt:  LEQYEV------------------------------------ANTKVHQILVDGGSSADIIS

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.2e-9656.99Show/hide
Query:  SFTLGGSARVWFRQLKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKK
        S TL GSAR+WFRQLKRGSISSFKSLAR FVTQ +GGR RSRP AYLLTIKQR TESL DYVARFNEEKLQVEGLTDAV+LLAFMSG++DEHL FSFGK+
Subjt:  SFTLGGSARVWFRQLKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKK

Query:  TLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK-------------------------------------------------
        T ++F++ALSRAQ+YMSAGEFF+SK+EP+ KR D K ERS +KP  S+WEK                                                 
Subjt:  TLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK-------------------------------------------------

Query:  ----------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV---------
                  DHGHAT DCFDLKEEVEGLIR+GYLKEYV+  KAT N E+D KSPAREIRTIM G  E++S RKRKA V EAR   EQ EV         
Subjt:  ----------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV---------

Query:  ---------------------------ANTKVHQILVDGGSSADIISLAAYKAIDLGEKILKSSPAPLVGLG
                                   AN KVH++LVDGGSSADI+S  AYKA+DL EK+LK SPAPLVG G
Subjt:  ---------------------------ANTKVHQILVDGGSSADIISLAAYKAIDLGEKILKSSPAPLVGLG

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]1.3e-7553.75Show/hide
Query:  LKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQK
        +KRGSISSFKSLAR FVTQ +GGR RSRP AYLLTIKQR TESLHDYVARFN+EKLQ+E LTD V+LLAFMSG++DEHL FSFGKKT S+F++ LSRAQ+
Subjt:  LKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQK

Query:  YMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK-----------------------------------------------------------DHGH
        YMSAGEFF+SK+EP+ KR DQK ERS +KP  S+WEK                                                           DH H
Subjt:  YMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK-----------------------------------------------------------DHGH

Query:  ATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV-----------------------
        AT D FDLKEEVEGLIR+GYL+EYV+  KAT N E++ KSPAREIRTIM G  E++S RKRKA V EAR   EQ EV                       
Subjt:  ATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV-----------------------

Query:  -------------ANTKVHQILVDGGSSADIIS
                     AN KVH+ILVDGGSSADIIS
Subjt:  -------------ANTKVHQILVDGGSSADIIS

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128052.0e-5849.49Show/hide
Query:  KQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWE
        ++R TESLHDYV RFN+EKLQVEGLTDAV+LLAF+ G++DEHL FSFGK+T S+F++ALSRAQ+YMSAGEFF+SK+E   KR DQK ERS +KP  S+WE
Subjt:  KQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWE

Query:  K-----------------------------------------------------------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMEN
        K                                                           DHGHAT DCFDLKEEVEGLI +GYLKEYV+  KAT N E+
Subjt:  K-----------------------------------------------------------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMEN

Query:  DNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV------------------------------------ANTKVHQILVDGGSSADIIS
        D KSPAREIRTIM G  E++S RKRK  V EAR   EQ EV                                    AN +VH+ILVDGGSSADIIS
Subjt:  DNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV------------------------------------ANTKVHQILVDGGSSADIIS

A0A6J1D7D2 uncharacterized protein LOC1110183079.9e-5880.13Show/hide
Query:  SFTLGGSARVWFRQLKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKK
        S TL GSARVWFRQLKRGSISSFKSLA+ FVTQ IGGR+RSRP AYLLTIKQR TESLHDYVARFNEEKLQVEGLT+AV+L+AFMS I+DEHL FSFGKK
Subjt:  SFTLGGSARVWFRQLKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKK

Query:  TLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK
        T S+F++ALSRAQKYMSAGEFF SK+EPE K++DQ  ERS +KP  S+WEK
Subjt:  TLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK

A0A6J1D911 uncharacterized protein LOC1110183651.3e-6256.49Show/hide
Query:  QRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK
        QR  ESLH+YVARFNEEKLQVEGLTD V+LLAFMSG++DEHL FSF KKT S+F++ LSRAQ+YMSAGEFF+SK+EP+ KR DQK ERS +KP  S+WEK
Subjt:  QRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK

Query:  -------------------------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARID
                                 DHGHAT DCFDLKEEV+GLIR GYLKEYV++ KAT N E+D KSPAREIRTI+ G  E++S RK KA V EAR +
Subjt:  -------------------------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARID

Query:  LEQYEV------------------------------------ANTKVHQILVDGGSSADIIS
         +Q EV                                    AN KVH+ILVDGGSSADIIS
Subjt:  LEQYEV------------------------------------ANTKVHQILVDGGSSADIIS

A0A6J1DWY0 uncharacterized protein LOC1110252931.4e-9656.99Show/hide
Query:  SFTLGGSARVWFRQLKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKK
        S TL GSAR+WFRQLKRGSISSFKSLAR FVTQ +GGR RSRP AYLLTIKQR TESL DYVARFNEEKLQVEGLTDAV+LLAFMSG++DEHL FSFGK+
Subjt:  SFTLGGSARVWFRQLKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKK

Query:  TLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK-------------------------------------------------
        T ++F++ALSRAQ+YMSAGEFF+SK+EP+ KR D K ERS +KP  S+WEK                                                 
Subjt:  TLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK-------------------------------------------------

Query:  ----------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV---------
                  DHGHAT DCFDLKEEVEGLIR+GYLKEYV+  KAT N E+D KSPAREIRTIM G  E++S RKRKA V EAR   EQ EV         
Subjt:  ----------DHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV---------

Query:  ---------------------------ANTKVHQILVDGGSSADIISLAAYKAIDLGEKILKSSPAPLVGLG
                                   AN KVH++LVDGGSSADI+S  AYKA+DL EK+LK SPAPLVG G
Subjt:  ---------------------------ANTKVHQILVDGGSSADIISLAAYKAIDLGEKILKSSPAPLVGLG

A0A6J1DYL6 uncharacterized protein LOC1110257856.2e-7653.75Show/hide
Query:  LKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQK
        +KRGSISSFKSLAR FVTQ +GGR RSRP AYLLTIKQR TESLHDYVARFN+EKLQ+E LTD V+LLAFMSG++DEHL FSFGKKT S+F++ LSRAQ+
Subjt:  LKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIKDEHLPFSFGKKTLSSFAKALSRAQK

Query:  YMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK-----------------------------------------------------------DHGH
        YMSAGEFF+SK+EP+ KR DQK ERS +KP  S+WEK                                                           DH H
Subjt:  YMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEK-----------------------------------------------------------DHGH

Query:  ATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV-----------------------
        AT D FDLKEEVEGLIR+GYL+EYV+  KAT N E++ KSPAREIRTIM G  E++S RKRKA V EAR   EQ EV                       
Subjt:  ATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPAREIRTIMRGSTEQKSNRKRKASVWEARIDLEQYEV-----------------------

Query:  -------------ANTKVHQILVDGGSSADIIS
                     AN KVH+ILVDGGSSADIIS
Subjt:  -------------ANTKVHQILVDGGSSADIIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACCGAGAATGGATGGACATCTACGGGGTTTCAGAGGCAATCTGATGCCGCGTTTTCTTCTTTCACCCTGGGTGGATCAGCTAGGGTTTGGTTTCGACAATTAAA
GCGAGGGTCGATTTCAAGCTTCAAAAGCTTGGCCAGGGTGTTTGTAACCCAGCTTATAGGAGGTCGGAATCGGAGTCGGCCCGGGGCATATCTCTTAACCATTAAGCAGA
GAATGACGGAGAGTCTCCATGATTACGTGGCACGGTTCAATGAAGAGAAGCTACAGGTGGAGGGTTTAACCGATGCAGTAGCGTTATTAGCATTCATGTCAGGCATCAAG
GACGAGCACCTGCCATTTTCATTCGGAAAAAAAACTCTGAGTAGTTTCGCGAAAGCACTGAGCCGAGCTCAGAAATACATGAGTGCTGGGGAGTTCTTCCATTCGAAGAA
AGAGCCCGAACGGAAGCGCGCTGACCAGAAAATAGAGAGGTCAGCGGAAAAGCCCCTAAGCTCAAAGTGGGAGAAAGACCATGGACATGCTACACATGATTGCTTTGATC
TCAAGGAAGAGGTAGAAGGACTCATCCGGAAAGGGTACCTCAAAGAATATGTGGATAATCTCAAAGCAACTCCAAATATGGAAAATGATAACAAATCCCCTGCCAGGGAA
ATTCGTACGATCATGAGAGGTTCAACGGAACAGAAGTCTAACAGGAAGAGAAAGGCGAGTGTATGGGAAGCAAGAATAGACCTAGAACAATATGAGGTAGCCAACACAAA
GGTGCACCAGATCTTGGTTGATGGGGGCAGCTCAGCCGACATCATTTCCTTAGCAGCCTACAAGGCTATAGACCTAGGAGAGAAAATCCTTAAGAGCAGCCCCGCACCGC
TAGTAGGACTTGGGGGGAGCAACTCATTCTGGAAGGAAGAGTGGAGCTACCAATCACATTTGGAAGTGGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTACCGAGAATGGATGGACATCTACGGGGTTTCAGAGGCAATCTGATGCCGCGTTTTCTTCTTTCACCCTGGGTGGATCAGCTAGGGTTTGGTTTCGACAATTAAA
GCGAGGGTCGATTTCAAGCTTCAAAAGCTTGGCCAGGGTGTTTGTAACCCAGCTTATAGGAGGTCGGAATCGGAGTCGGCCCGGGGCATATCTCTTAACCATTAAGCAGA
GAATGACGGAGAGTCTCCATGATTACGTGGCACGGTTCAATGAAGAGAAGCTACAGGTGGAGGGTTTAACCGATGCAGTAGCGTTATTAGCATTCATGTCAGGCATCAAG
GACGAGCACCTGCCATTTTCATTCGGAAAAAAAACTCTGAGTAGTTTCGCGAAAGCACTGAGCCGAGCTCAGAAATACATGAGTGCTGGGGAGTTCTTCCATTCGAAGAA
AGAGCCCGAACGGAAGCGCGCTGACCAGAAAATAGAGAGGTCAGCGGAAAAGCCCCTAAGCTCAAAGTGGGAGAAAGACCATGGACATGCTACACATGATTGCTTTGATC
TCAAGGAAGAGGTAGAAGGACTCATCCGGAAAGGGTACCTCAAAGAATATGTGGATAATCTCAAAGCAACTCCAAATATGGAAAATGATAACAAATCCCCTGCCAGGGAA
ATTCGTACGATCATGAGAGGTTCAACGGAACAGAAGTCTAACAGGAAGAGAAAGGCGAGTGTATGGGAAGCAAGAATAGACCTAGAACAATATGAGGTAGCCAACACAAA
GGTGCACCAGATCTTGGTTGATGGGGGCAGCTCAGCCGACATCATTTCCTTAGCAGCCTACAAGGCTATAGACCTAGGAGAGAAAATCCTTAAGAGCAGCCCCGCACCGC
TAGTAGGACTTGGGGGGAGCAACTCATTCTGGAAGGAAGAGTGGAGCTACCAATCACATTTGGAAGTGGGCTGA
Protein sequenceShow/hide protein sequence
MLTENGWTSTGFQRQSDAAFSSFTLGGSARVWFRQLKRGSISSFKSLARVFVTQLIGGRNRSRPGAYLLTIKQRMTESLHDYVARFNEEKLQVEGLTDAVALLAFMSGIK
DEHLPFSFGKKTLSSFAKALSRAQKYMSAGEFFHSKKEPERKRADQKIERSAEKPLSSKWEKDHGHATHDCFDLKEEVEGLIRKGYLKEYVDNLKATPNMENDNKSPARE
IRTIMRGSTEQKSNRKRKASVWEARIDLEQYEVANTKVHQILVDGGSSADIISLAAYKAIDLGEKILKSSPAPLVGLGGSNSFWKEEWSYQSHLEVG