; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc07g22080 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g22080
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionDNA polymerase
Genome locationchr7:16222253..16223470
RNA-Seq ExpressionMoc07g22080
SyntenyMoc07g22080
Gene Ontology termsGO:0006272 - leading strand elongation (biological process)
GO:0006273 - lagging strand elongation (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:1902975 - mitotic DNA replication initiation (biological process)
GO:0005658 - alpha DNA polymerase:primase complex (cellular component)
GO:0003682 - chromatin binding (molecular function)
GO:0003688 - DNA replication origin binding (molecular function)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0017076 - purine nucleotide binding (molecular function)
GO:0019103 - pyrimidine nucleotide binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR024647 - DNA polymerase alpha catalytic subunit, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457764.1 PREDICTED: DNA polymerase alpha catalytic subunit [Cucumis melo]1.3e-10562.86Show/hide
Query:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK
        S  S+AAAR  A ERL+AIR  GRRSEAGGFQ+KLENPIYDTIPEDEY  LVAKRREEARGFIVDD DGLGYGDEGEEE+WS+  V S   SD EL+KPK
Subjt:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK

Query:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----
        KRKV KKE Q KKPSS          G QKLSSMF+    RKT  D K KG ACDSIVDD+IAEFAP ETDRERRRKG+IGA+PI RT   +PA K    
Subjt:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----

Query:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV
                                      SD+  VR G+E QGNG + E   KEDLN Q +LDP+ Q  +S IKEDV  D + I VETK EPL+K EPV
Subjt:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV

Query:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
         TLNA+I+ E+ PALSATAEW+AVRS GS +V+SAA ++EEK DFDTD DGSL FY+IDAHEELFG NMGTVYLFGK
Subjt:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

XP_022149463.1 DNA polymerase alpha catalytic subunit-like [Momordica charantia]1.4e-11768.44Show/hide
Query:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK
        S  S+AA R QA ERLRAIR  GRRSEAGGFQ+KLENPIYDTIPEDEY  LVAKRREEARGFIVDD DGLGYGDEGEEE+WS+  VHS   SD ELEKPK
Subjt:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK

Query:  KRKVEKKEAQSKKPSS---------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGKY----
        KRK EKKEAQ KKPSS         G QKLSSMF+    RK + D K KGSACDSIVDD+IAEFAP ETDRERRRKG+IGAMPISRT  PIPA K     
Subjt:  KRKVEKKEAQSKKPSS---------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGKY----

Query:  -----------------------------SDVGPVRAGIEDQGNGGSME-IGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV
                                     +D+ PVRAGIE QGNG S + I EKE+LN Q S DPIVQSH+S +KEDV+EDNMPIMVETK EPL K EPV
Subjt:  -----------------------------SDVGPVRAGIEDQGNGGSME-IGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV

Query:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
        CTLNA+INEE  PALSAT  W+AVRS GS N DSAA ISEEK DFD D DGSL FY+I+AHEELFGAN GTVYLFGK
Subjt:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

XP_022156119.1 LOW QUALITY PROTEIN: DNA polymerase alpha catalytic subunit-like [Momordica charantia]6.3e-17492.94Show/hide
Query:  MQSSAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHSSDSELEKPK
        MQSSAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHSSDSELEKPK
Subjt:  MQSSAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHSSDSELEKPK

Query:  KRKVEKKEAQSKKPSSGNQKLSSMFSRKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGKY-----------------
        KRKVEKKEAQSKKPSSGNQKLSSMFSRKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK                  
Subjt:  KRKVEKKEAQSKKPSSGNQKLSSMFSRKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGKY-----------------

Query:  -------SDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPVCTLNARINEEKYPALSATAEWEA
               SDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPVCTLNARINEEKYPALSATAEWEA
Subjt:  -------SDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPVCTLNARINEEKYPALSATAEWEA

Query:  VRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
        VRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
Subjt:  VRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

XP_023007070.1 DNA polymerase alpha catalytic subunit [Cucurbita maxima]4.3e-10662.86Show/hide
Query:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK
        S  S+A AR QA ERL+AIR  GRRSEAGGFQ+KLENPIYDTIPEDEY  LVAKRREEARGFIVDD DGLGYGDEGEEE+WS+  + S   SD E EKPK
Subjt:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK

Query:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----
        KRK EKKEAQ KKPSS          G QKLSSMF+    RKT  D K KG ACDSIVDD+IAEFAP ETDRERRRKG+IGA PIS+T  P+PA K    
Subjt:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----

Query:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV
                                      SD+  VRA IE QGNG + +   K+DL+ + +L  + QSH+  IKEDV+EDNMPI+VETK E L+K EPV
Subjt:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV

Query:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
        CTLNA I++ K PALSATA W+AVRS GS N DSAA  SE+K  FD DADGSL FY++DAHEELFGANMGTVYLFGK
Subjt:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

XP_038902720.1 DNA polymerase alpha catalytic subunit [Benincasa hispida]2.9e-11064.46Show/hide
Query:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK
        S  S+AAAR  A ERL+AIR  GRRS+AGGFQ+KLENPIYDTIPEDEY  LVAKRREEARGFIVDD DGLGYGDEGEEE+WS+  V S   SD EL+KPK
Subjt:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK

Query:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----
        KRKVEKKEAQ KKPSS          G QKLSSMF+    RKT  D K KG ACDSIVDD+IAEFAP ETDRERRRKG+IGA+PISRT V +PA K    
Subjt:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----

Query:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV
                                      SD+ PVRAG+E QGNG + E   KEDLN Q +LDP+ Q  +S IKEDV+ED+ PIMVETK EPL+K EPV
Subjt:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV

Query:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
         TLNA+I+ E+ PALSATA W+AVRS GS +V+S+A  +EEK DFD DADGSL FY++DAHEELFGANMGTVYLFGK
Subjt:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

TrEMBL top hitse value%identityAlignment
A0A1S3C6X9 DNA polymerase6.1e-10662.86Show/hide
Query:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK
        S  S+AAAR  A ERL+AIR  GRRSEAGGFQ+KLENPIYDTIPEDEY  LVAKRREEARGFIVDD DGLGYGDEGEEE+WS+  V S   SD EL+KPK
Subjt:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK

Query:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----
        KRKV KKE Q KKPSS          G QKLSSMF+    RKT  D K KG ACDSIVDD+IAEFAP ETDRERRRKG+IGA+PI RT   +PA K    
Subjt:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----

Query:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV
                                      SD+  VR G+E QGNG + E   KEDLN Q +LDP+ Q  +S IKEDV  D + I VETK EPL+K EPV
Subjt:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV

Query:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
         TLNA+I+ E+ PALSATAEW+AVRS GS +V+SAA ++EEK DFDTD DGSL FY+IDAHEELFG NMGTVYLFGK
Subjt:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

A0A5A7TSE8 DNA polymerase6.1e-10662.86Show/hide
Query:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK
        S  S+AAAR  A ERL+AIR  GRRSEAGGFQ+KLENPIYDTIPEDEY  LVAKRREEARGFIVDD DGLGYGDEGEEE+WS+  V S   SD EL+KPK
Subjt:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK

Query:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----
        KRKV KKE Q KKPSS          G QKLSSMF+    RKT  D K KG ACDSIVDD+IAEFAP ETDRERRRKG+IGA+PI RT   +PA K    
Subjt:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----

Query:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV
                                      SD+  VR G+E QGNG + E   KEDLN Q +LDP+ Q  +S IKEDV  D + I VETK EPL+K EPV
Subjt:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV

Query:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
         TLNA+I+ E+ PALSATAEW+AVRS GS +V+SAA ++EEK DFDTD DGSL FY+IDAHEELFG NMGTVYLFGK
Subjt:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

A0A6J1D6V1 DNA polymerase6.9e-11868.44Show/hide
Query:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK
        S  S+AA R QA ERLRAIR  GRRSEAGGFQ+KLENPIYDTIPEDEY  LVAKRREEARGFIVDD DGLGYGDEGEEE+WS+  VHS   SD ELEKPK
Subjt:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK

Query:  KRKVEKKEAQSKKPSS---------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGKY----
        KRK EKKEAQ KKPSS         G QKLSSMF+    RK + D K KGSACDSIVDD+IAEFAP ETDRERRRKG+IGAMPISRT  PIPA K     
Subjt:  KRKVEKKEAQSKKPSS---------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGKY----

Query:  -----------------------------SDVGPVRAGIEDQGNGGSME-IGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV
                                     +D+ PVRAGIE QGNG S + I EKE+LN Q S DPIVQSH+S +KEDV+EDNMPIMVETK EPL K EPV
Subjt:  -----------------------------SDVGPVRAGIEDQGNGGSME-IGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV

Query:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
        CTLNA+INEE  PALSAT  W+AVRS GS N DSAA ISEEK DFD D DGSL FY+I+AHEELFGAN GTVYLFGK
Subjt:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

A0A6J1DSE0 DNA polymerase3.0e-17492.94Show/hide
Query:  MQSSAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHSSDSELEKPK
        MQSSAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHSSDSELEKPK
Subjt:  MQSSAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHSSDSELEKPK

Query:  KRKVEKKEAQSKKPSSGNQKLSSMFSRKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGKY-----------------
        KRKVEKKEAQSKKPSSGNQKLSSMFSRKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK                  
Subjt:  KRKVEKKEAQSKKPSSGNQKLSSMFSRKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGKY-----------------

Query:  -------SDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPVCTLNARINEEKYPALSATAEWEA
               SDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPVCTLNARINEEKYPALSATAEWEA
Subjt:  -------SDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPVCTLNARINEEKYPALSATAEWEA

Query:  VRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
        VRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
Subjt:  VRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

A0A6J1L1Z1 DNA polymerase2.1e-10662.86Show/hide
Query:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK
        S  S+A AR QA ERL+AIR  GRRSEAGGFQ+KLENPIYDTIPEDEY  LVAKRREEARGFIVDD DGLGYGDEGEEE+WS+  + S   SD E EKPK
Subjt:  SAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS---SDSELEKPK

Query:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----
        KRK EKKEAQ KKPSS          G QKLSSMF+    RKT  D K KG ACDSIVDD+IAEFAP ETDRERRRKG+IGA PIS+T  P+PA K    
Subjt:  KRKVEKKEAQSKKPSS----------GNQKLSSMFS----RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGK----

Query:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV
                                      SD+  VRA IE QGNG + +   K+DL+ + +L  + QSH+  IKEDV+EDNMPI+VETK E L+K EPV
Subjt:  -----------------------------YSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPV

Query:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
        CTLNA I++ K PALSATA W+AVRS GS N DSAA  SE+K  FD DADGSL FY++DAHEELFGANMGTVYLFGK
Subjt:  CTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

SwissProt top hitse value%identityAlignment
O48653 DNA polymerase alpha catalytic subunit4.3e-4039.35Show/hide
Query:  SKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS-----SDSELEKPKK
        S+A AR  A ERLRAIR  G R+ A   Q+++E PIYDT+ E++Y  LVA+RR++A  FIVDD DGLGY D+G EE+W+   +HS     SD E   P+K
Subjt:  SKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHS-----SDSELEKPKK

Query:  RKVEKKEAQSKKPSS---------------GNQKLSSMFS----RKTSGD-VKPKGSACDSIVDDIIAEFAPVETDRE--RRRKGRIGA-MPISRTSVPI
        RK  +   QSK+P                 G Q+LSSMF+    RK   D  +    A DSIVDD+IAEFAP + DRE  RRR GR+ A  P   T+  I
Subjt:  RKVEKKEAQSKKPSS---------------GNQKLSSMFS----RKTSGD-VKPKGSACDSIVDDIIAEFAPVETDRE--RRRKGRIGA-MPISRTSVPI

Query:  PAGKY---------SDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEP--LLKNEPVCTLNARINEE---K
         A            SD       + D GN   ME+  K D+  +  LD  + + +       + +N   + E K E    +K E V  LNA+I  E    
Subjt:  PAGKY---------SDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVETKMEP--LLKNEPVCTLNARINEE---K

Query:  YPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDA-----DGSLHFYVIDAHEELFGANMGTVYLFGK
            SATA W  +   G       A  +      D  +     DG+L FY++DA+EE FGAN GTVYLFGK
Subjt:  YPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDA-----DGSLHFYVIDAHEELFGANMGTVYLFGK

P28040 DNA polymerase alpha catalytic subunit6.4e-0424.39Show/hide
Query:  QAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHSSDSELEKPKKRKVEKKEAQSKK
        Q F  LRA+R+ G ++ A  ++ K    +YD + E+EY  +V +R +E   F+VDD +G GY D G  +EW +   H SD + E  K     K++     
Subjt:  QAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHSSDSELEKPKKRKVEKKEAQSKK

Query:  PSSGNQKLSSMFS-------------RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRER-----RRKGRIGAMPISRTSV----------------PIP
         +  NQ++ + F              +    + +       SI  DI    +  + +R       +R+ +  A  IS T+V                P P
Subjt:  PSSGNQKLSSMFS-------------RKTSGDVKPKGSACDSIVDDIIAEFAPVETDRER-----RRKGRIGAMPISRTSV----------------PIP

Query:  AGKYSDVGPVRAGIEDQGNGGS--MEIGEKE----------DLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVET-KMEPLLKNEPVCTLNARINEEKYP
        A          A +E + N  S  ME+ E E          D+    ++ P++ SH      D V+D   +   T   +PL    P+  L++ ++   + 
Subjt:  AGKYSDVGPVRAGIEDQGNGGS--MEIGEKE----------DLNFQTSLDPIVQSHSSWIKEDVVEDNMPIMVET-KMEPLLKNEPVCTLNARINEEKYP

Query:  ALSATAEWEAVRSGGSRNVDSAAA-----ISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
         +++            +NVD  A+     IS+      T+ DGSL F+ +D + E++    G++ LFGK
Subjt:  ALSATAEWEAVRSGGSRNVDSAAA-----ISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

Q9FHA3 DNA polymerase alpha catalytic subunit1.2e-4237.88Show/hide
Query:  SAQSKAAARRQAFERLRAIRRCGRRS-EAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDG--LGYGDEGEEEEWSELLVHSSDSE-----
        S  ++A++R+   ERL+AIR+ G RS   GG+ ++L+ PI+DT+ ++EY  LV++RREEARGF+V+DG+G  LGY DEGEEE+WS+     S  E     
Subjt:  SAQSKAAARRQAFERLRAIRRCGRRS-EAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDG--LGYGDEGEEEEWSELLVHSSDSE-----

Query:  -----LEKPKKRKVEKKEAQSKKPS---------SGNQKLSSMFSRKTSGDVKPKGSA-CDSIVDDIIAEFAPVETDRERRRKGRI-GAMPISRTSVPIP
             L+K KK K + ++ Q KK +         +G  +LSSMF+  +   VK    A  + I+D+IIA+  P E+DR++  + ++ G +P++       
Subjt:  -----LEKPKKRKVEKKEAQSKKPS---------SGNQKLSSMFSRKTSGDVKPKGSA-CDSIVDDIIAEFAPVETDRERRRKGRI-GAMPISRTSVPIP

Query:  AGKYSDVG-----PVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVV-EDNMPIMVETKMEPLLKNEPVCTLNARIN-EEKYPALSATA
            S +G     P  +  E        E+ ++ED+      + I       +  D+V ED    + +T+++  L  + V TLNA I+ +EK  ALSATA
Subjt:  AGKYSDVG-----PVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVV-EDNMPIMVETKMEPLLKNEPVCTLNARIN-EEKYPALSATA

Query:  EW-EAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
         W EA+   G+ N     + SE K +FD DADGSL F+++DA+EE FGA+MGT+YLFGK
Subjt:  EW-EAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK

Arabidopsis top hitse value%identityAlignment
AT5G67100.1 DNA-directed DNA polymerases8.5e-4437.88Show/hide
Query:  SAQSKAAARRQAFERLRAIRRCGRRS-EAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDG--LGYGDEGEEEEWSELLVHSSDSE-----
        S  ++A++R+   ERL+AIR+ G RS   GG+ ++L+ PI+DT+ ++EY  LV++RREEARGF+V+DG+G  LGY DEGEEE+WS+     S  E     
Subjt:  SAQSKAAARRQAFERLRAIRRCGRRS-EAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDG--LGYGDEGEEEEWSELLVHSSDSE-----

Query:  -----LEKPKKRKVEKKEAQSKKPS---------SGNQKLSSMFSRKTSGDVKPKGSA-CDSIVDDIIAEFAPVETDRERRRKGRI-GAMPISRTSVPIP
             L+K KK K + ++ Q KK +         +G  +LSSMF+  +   VK    A  + I+D+IIA+  P E+DR++  + ++ G +P++       
Subjt:  -----LEKPKKRKVEKKEAQSKKPS---------SGNQKLSSMFSRKTSGDVKPKGSA-CDSIVDDIIAEFAPVETDRERRRKGRI-GAMPISRTSVPIP

Query:  AGKYSDVG-----PVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVV-EDNMPIMVETKMEPLLKNEPVCTLNARIN-EEKYPALSATA
            S +G     P  +  E        E+ ++ED+      + I       +  D+V ED    + +T+++  L  + V TLNA I+ +EK  ALSATA
Subjt:  AGKYSDVG-----PVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIVQSHSSWIKEDVV-EDNMPIMVETKMEPLLKNEPVCTLNARIN-EEKYPALSATA

Query:  EW-EAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
         W EA+   G+ N     + SE K +FD DADGSL F+++DA+EE FGA+MGT+YLFGK
Subjt:  EW-EAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCGTCTGCACAATCCAAGGCAGCTGCCCGCCGTCAGGCTTTCGAACGTCTACGAGCCATCCGCAGATGCGGTCGTCGATCAGAAGCCGGTGGTTTCCAACTTAA
GCTAGAGAATCCTATATATGATACGATTCCTGAGGATGAATATTATGATCTCGTTGCAAAACGTCGCGAGGAAGCCCGAGGGTTTATTGTTGACGACGGCGACGGTCTTG
GGTATGGAGACGAAGGCGAGGAAGAGGAATGGTCCGAACTTTTGGTCCATTCCTCCGACAGTGAACTTGAGAAACCTAAAAAGAGGAAAGTAGAGAAGAAGGAAGCGCAA
TCGAAGAAGCCCTCCTCTGGGAATCAAAAGCTTTCTTCGATGTTCTCCAGGAAAACGAGTGGAGACGTTAAGCCCAAAGGGTCGGCTTGTGACAGCATCGTAGATGATAT
AATTGCCGAATTTGCGCCAGTTGAGACTGACAGAGAGAGGCGTAGAAAGGGGCGAATCGGAGCTATGCCGATTTCGAGGACTTCTGTGCCTATTCCTGCTGGGAAGTATA
GTGATGTTGGGCCCGTGCGAGCTGGTATAGAGGACCAGGGGAATGGTGGAAGTATGGAAATTGGGGAAAAGGAGGATTTAAATTTTCAGACCAGTTTGGATCCGATTGTG
CAATCACATAGTTCTTGGATCAAGGAAGATGTAGTTGAAGATAATATGCCTATTATGGTTGAAACAAAGATGGAACCATTATTGAAGAATGAGCCGGTGTGTACTCTGAA
TGCTAGGATTAATGAAGAAAAATATCCAGCTTTGAGTGCTACTGCTGAGTGGGAAGCAGTGAGGAGCGGAGGGAGCAGAAACGTTGATTCTGCTGCAGCAATTTCTGAAG
AGAAATTTGATTTTGATACTGACGCGGACGGCTCTCTGCATTTCTATGTAATTGATGCGCACGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTATTTGGCAAG
GCTAGTACAACTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCGTCTGCACAATCCAAGGCAGCTGCCCGCCGTCAGGCTTTCGAACGTCTACGAGCCATCCGCAGATGCGGTCGTCGATCAGAAGCCGGTGGTTTCCAACTTAA
GCTAGAGAATCCTATATATGATACGATTCCTGAGGATGAATATTATGATCTCGTTGCAAAACGTCGCGAGGAAGCCCGAGGGTTTATTGTTGACGACGGCGACGGTCTTG
GGTATGGAGACGAAGGCGAGGAAGAGGAATGGTCCGAACTTTTGGTCCATTCCTCCGACAGTGAACTTGAGAAACCTAAAAAGAGGAAAGTAGAGAAGAAGGAAGCGCAA
TCGAAGAAGCCCTCCTCTGGGAATCAAAAGCTTTCTTCGATGTTCTCCAGGAAAACGAGTGGAGACGTTAAGCCCAAAGGGTCGGCTTGTGACAGCATCGTAGATGATAT
AATTGCCGAATTTGCGCCAGTTGAGACTGACAGAGAGAGGCGTAGAAAGGGGCGAATCGGAGCTATGCCGATTTCGAGGACTTCTGTGCCTATTCCTGCTGGGAAGTATA
GTGATGTTGGGCCCGTGCGAGCTGGTATAGAGGACCAGGGGAATGGTGGAAGTATGGAAATTGGGGAAAAGGAGGATTTAAATTTTCAGACCAGTTTGGATCCGATTGTG
CAATCACATAGTTCTTGGATCAAGGAAGATGTAGTTGAAGATAATATGCCTATTATGGTTGAAACAAAGATGGAACCATTATTGAAGAATGAGCCGGTGTGTACTCTGAA
TGCTAGGATTAATGAAGAAAAATATCCAGCTTTGAGTGCTACTGCTGAGTGGGAAGCAGTGAGGAGCGGAGGGAGCAGAAACGTTGATTCTGCTGCAGCAATTTCTGAAG
AGAAATTTGATTTTGATACTGACGCGGACGGCTCTCTGCATTTCTATGTAATTGATGCGCACGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTATTTGGCAAG
GCTAGTACAACTGCTTAG
Protein sequenceShow/hide protein sequence
MQSSAQSKAAARRQAFERLRAIRRCGRRSEAGGFQLKLENPIYDTIPEDEYYDLVAKRREEARGFIVDDGDGLGYGDEGEEEEWSELLVHSSDSELEKPKKRKVEKKEAQ
SKKPSSGNQKLSSMFSRKTSGDVKPKGSACDSIVDDIIAEFAPVETDRERRRKGRIGAMPISRTSVPIPAGKYSDVGPVRAGIEDQGNGGSMEIGEKEDLNFQTSLDPIV
QSHSSWIKEDVVEDNMPIMVETKMEPLLKNEPVCTLNARINEEKYPALSATAEWEAVRSGGSRNVDSAAAISEEKFDFDTDADGSLHFYVIDAHEELFGANMGTVYLFGK
ASTTA