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Moc07g26680 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g26680
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description40S ribosomal protein S21
Genome locationchr7:19896205..19899087
RNA-Seq ExpressionMoc07g26680
SyntenyMoc07g26680
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR018279 - Ribosomal protein S21e, conserved site
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]1.4e-3797.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]4.8e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]6.3e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022138832.1 40S ribosomal protein S21-2-like [Momordica charantia]2.1e-38100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022959408.1 40S ribosomal protein S21-2 isoform X1 [Cucurbita moschata]2.4e-3792.86Show/hide
Query:  AKMQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        A MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GH+DENGIYTGQFSTFALCG+IRAQGDADSA+DRLWQKKK EVRQQ
Subjt:  AKMQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHD3 40S ribosomal protein S212.3e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A1S4DSM1 40S ribosomal protein S216.7e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A5D3CXC9 40S ribosomal protein S216.7e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A6J1CCB6 40S ribosomal protein S211.0e-38100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A6J1CCM4 40S ribosomal protein S213.0e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S213.0e-3582.93Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGHVDENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+KAEV+QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

Q3E902 40S ribosomal protein S21-23.6e-3683.95Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

Q41852 40S ribosomal protein S211.3e-3379.01Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGH+D NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKKAE++Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

Q9M337 40S ribosomal protein S21-15.1e-3579.27Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

Q9SMI2 40S ribosomal protein S212.8e-2569.33Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GHVD N G+YTG ++TFALCGF+R+ G++D+AL+RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e3.7e-3679.27Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

AT3G53890.2 Ribosomal protein S21e3.7e-3679.27Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

AT5G27700.1 Ribosomal protein S21e2.5e-3783.95Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACTCGGGACGGCCTTGGTCACAAGTCCTGCTGCGAGGTTTTTCTCCAGATCTTTGACGAACTTAGTCGCCGCAGCCAAAATGCAGAACGAAGAGGGAAAG
ATCACGGAGCTTTACATTCCTAGGAAGTGTTCCGCTACAAATCGGCTCATCACTTCCAAGGACCACGCCTCGGTTCAGATCAACATCGGTCACGTCGATGAGAAT
GGCATCTATACAGGCCAATTCTCCACTTTCGCACTTTGTGGTTTCATCCGTGCTCAGGGAGATGCCGACAGTGCTTTGGACAGGCTGTGGCAGAAGAAGAAAGCC
GAAGTTCGTCAACAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAACTCGGGACGGCCTTGGTCACAAGTCCTGCTGCGAGGTTTTTCTCCAGATCTTTGACGAACTTAGTCGCCGCAGCCAAAATGCAGAACGAAGAGGGAAAG
ATCACGGAGCTTTACATTCCTAGGAAGTGTTCCGCTACAAATCGGCTCATCACTTCCAAGGACCACGCCTCGGTTCAGATCAACATCGGTCACGTCGATGAGAAT
GGCATCTATACAGGCCAATTCTCCACTTTCGCACTTTGTGGTTTCATCCGTGCTCAGGGAGATGCCGACAGTGCTTTGGACAGGCTGTGGCAGAAGAAGAAAGCC
GAAGTTCGTCAACAGTAG
Protein sequenceShow/hide protein sequence
MKLGTALVTSPAARFFSRSLTNLVAAAKMQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKA
EVRQQ