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Moc07g27490 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc07g27490
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr7:20499891..20501141
RNA-Seq ExpressionMoc07g27490
SyntenyMoc07g27490
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037196.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-0646.03Show/hide
Query:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF
        TVH L P++  +  W+ +  EV+  R N  T++ EALI+WK L   EATWE   D+  QFPEF
Subjt:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF

KAA0050511.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-0646.03Show/hide
Query:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF
        TV  LTP++  +  W+ +  EV+  R N  T++ EALI+WK L   EATWE   D+  QFPEF
Subjt:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF

KAA0053086.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-0637.33Show/hide
Query:  MAQMEAHQKSTTTVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF
        ++Q++   ++   VH L P++  ++ W+ + AE+F  R N+ T+  EALI+W+ L   EATWE  +D  +QFP F
Subjt:  MAQMEAHQKSTTTVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF

KAA0066243.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]3.1e-0639.02Show/hide
Query:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEFSRWNFADARTLGTRWIWNR
        TV PL P++  +  W+ +  EV++ R N  T++ EALI+WK L   EATWE   D+  QFP+F   +          WIW R
Subjt:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEFSRWNFADARTLGTRWIWNR

TYK24654.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-0646.03Show/hide
Query:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF
        TV  LTP++  +  W+ +  EV+  R N  T++ EALI+WK L   EATWE   D+  QFPEF
Subjt:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF

TrEMBL top hitse value%identityAlignment
A0A5A7UFT6 Ty3-gypsy retrotransposon protein1.5e-0637.33Show/hide
Query:  MAQMEAHQKSTTTVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF
        ++Q++   ++   VH L P++  ++ W+ + AE+F  R N+ T+  EALI+W+ L   EATWE  +D  +QFP F
Subjt:  MAQMEAHQKSTTTVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF

A0A5D3BHL8 Putative retroelement pol polyprotein1.5e-0639.02Show/hide
Query:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEFSRWNFADARTLGTRWIWNR
        TV PL P++  +  W+ +  EV++ R N  T++ EALI+WK L   EATWE   D+  QFP+F   +          WIW R
Subjt:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEFSRWNFADARTLGTRWIWNR

A0A5D3C5I2 Soluble inorganic pyrophosphatase 12.6e-0646.03Show/hide
Query:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF
        TV PL P++  +  W+ +  EV++ R N  T   EALI+WK L+  EATWE   D+  QFPEF
Subjt:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF

A0A5D3CU05 Ty3/gypsy retrotransposon protein2.6e-0646.03Show/hide
Query:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF
        TVH L P++  +  W+ +  EV+  R N  T++ EALI+WK L   EATWE   D+  QFPEF
Subjt:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF

A0A5D3DM31 Ty3/gypsy retrotransposon protein2.6e-0646.03Show/hide
Query:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF
        TV  LTP++  +  W+ +  EV+  R N  T++ EALI+WK L   EATWE   D+  QFPEF
Subjt:  TVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGTCTGAAGGAGTCAAACGCCATTCAGGGACAAGTTGAATCAAACCAGAAGATGCGGGAGAAGTTTATGGCTCAGATGGAGGCTCATCAGAAGTCCACAACTAC
TGTTCATCCACTCACGCCGTGGGTGACGACTAGTATGGGATGGCTTGCTGAGCTAGCTGAGGTGTTTGCCACCAGAACTAATGACAAGACTCAAAAGGAAGAAGCTTTAA
TTGCCTGGAAGAATCTAGCTGAAGAGGAAGCAACGTGGGAGGTTGTCGAGGACTTATATAAGCAATTCCCTGAATTTAGCCGATGGAACTTTGCTGATGCCCGCACCTTG
GGAACAAGGTGGATCTGGAACAGGGGGCTATGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGTCTGAAGGAGTCAAACGCCATTCAGGGACAAGTTGAATCAAACCAGAAGATGCGGGAGAAGTTTATGGCTCAGATGGAGGCTCATCAGAAGTCCACAACTAC
TGTTCATCCACTCACGCCGTGGGTGACGACTAGTATGGGATGGCTTGCTGAGCTAGCTGAGGTGTTTGCCACCAGAACTAATGACAAGACTCAAAAGGAAGAAGCTTTAA
TTGCCTGGAAGAATCTAGCTGAAGAGGAAGCAACGTGGGAGGTTGTCGAGGACTTATATAAGCAATTCCCTGAATTTAGCCGATGGAACTTTGCTGATGCCCGCACCTTG
GGAACAAGGTGGATCTGGAACAGGGGGCTATGTTAG
Protein sequenceShow/hide protein sequence
MASLKESNAIQGQVESNQKMREKFMAQMEAHQKSTTTVHPLTPWVTTSMGWLAELAEVFATRTNDKTQKEEALIAWKNLAEEEATWEVVEDLYKQFPEFSRWNFADARTL
GTRWIWNRGLC