CuGenDBv2

Gene ID	Moc08g00280
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA-directed RNA polymerase subunit 10-like protein
Genome location	chr8:171800..173682
RNA-Seq Expression	Moc08g00280
Synteny	Moc08g00280
Gene Ontology terms	GO:0006360 - transcription by RNA polymerase I (biological process) GO:0006366 - transcription by RNA polymerase II (biological process) GO:0042797 - tRNA transcription by RNA polymerase III (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10 IPR023580 - RNA polymerase subunit RPB10

Homology

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GenBank top hits

e value

%identity

Alignment

AFK37774.1 unknown [Lotus japonicus]

3.5e-16

95.74

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

XP_004138685.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus]

4.6e-16

95.74

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

XP_010696273.1 PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Beta vulgaris subsp. vulgaris]

1.0e-15

93.62

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

XP_021715575.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 isoform X2 [Chenopodium quinoa]

1.0e-15

93.62

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

XP_023536875.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita pepo subsp. pepo]

4.6e-16

95.74

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPW4 Uncharacterized protein

2.2e-16

95.74

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

A0A6J1BRM3 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.2e-16

95.74

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

A0A6J1GGE0 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.2e-16

95.74

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

A0A6J1KRF4 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.2e-16

95.74

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

I3SBY2 Uncharacterized protein

1.7e-16

95.74

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

SwissProt top hits

e value

%identity

Alignment

A8Y1E9 DNA-directed RNA polymerases I, II, and III subunit RPABC5

6.4e-13

79.07

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK
        L+ +YSEGDALDALGL RYCCRRML+ HVDLIEKLLNY+ L+K
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5

9.6e-17

87.23

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 10

1.6e-16

87.23

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

Q9GR61 DNA-directed RNA polymerases I, II, and III subunit RPABC5

6.4e-13

79.07

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK
        L+ +YSEGDALDALGL RYCCRRML+ HVDLIEKLLNY+ L+K
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein

7.4e-17

88.89

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        L+ DY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT++KSD
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD

Arabidopsis top hits

e value

%identity

Alignment

AT1G11475.1 RNA polymerases N / 8 kDa subunit

1.2e-17

87.23

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS
        L+ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

AT1G61700.1 RNA polymerases N / 8 kDa subunit

5.2e-18

88.89

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Query:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        L+ DY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT++KSD
Subjt:  LRKDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD

Sequences

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CDS sequence

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ATGTCCTTAAAGCTTTCTAGTGTAATTTTCTTGTATCGGGTTTTTGGGGTGGTAGGTGGAATTTGGCCGAGCGGCTTTGGAACTAGAGCAAGTGCCGCACAATCGCTCGA
GCTGCTTCGAAAAGGTTACAACGCGAAGAAAAACCCTCTCAGAGCCCTAGGAAGGCGGTTGAATAGTGAGGCAGCGTCGGAACCCCGGGCTAGGGCAGAAAGCGAAGATG
ATCATCCCAGTACGTTGCTTCACTTGCGGAAAGACTATTCTGAAGGAGATGCTCTCGATGCACTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTA
GACCTTATCGAAAAGCTTCTTAATTACAACACTTTGGATAAGTCTGATACCAGTTAG

mRNA sequence

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Protein sequence

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MSLKLSSVIFLYRVFGVVGGIWPSGFGTRASAAQSLELLRKGYNAKKNPLRALGRRLNSEAASEPRARAESEDDHPSTLLHLRKDYSEGDALDALGLVRYCCRRMLMTHV
DLIEKLLNYNTLDKSDTS

Moc08g00280 (gene) of Bitter gourd (OHB3-1) v2 genome