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Moc08g01660 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g01660
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr8:1079992..1080936
RNA-Seq ExpressionMoc08g01660
SyntenyMoc08g01660
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]3.2e-2642.59Show/hide
Query:  INKEPHLETNRSSFKRKNKVQTVVSKRKGKYQQGFVAY--SPSTVPINSLTL------------QDDPRTLPDNHSSRRQLKRESFHSIPIFYTELLSQL
        I+K+   E +   F    K +++  +R  KY+Q F +Y  + S +P NS  L             + P+       S+       F  IP+ YTELL QL
Subjt:  INKEPHLETNRSSFKRKNKVQTVVSKRKGKYQQGFVAY--SPSTVPINSLTL------------QDDPRTLPDNHSSRRQLKRESFHSIPIFYTELLSQL

Query:  FQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSK
         Q   LAP+P+ P+RPPYPKW+D   RCDYHAG VGHSTENC +LK KVQ L+ AGWL F K
Subjt:  FQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSK

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]2.2e-2763.33Show/hide
Query:  SSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDG
        ++R   K+  F  IP+ YTELL QLFQ N LAPVPV+P++PPYP+WYD   RCDYHAGA+ HSTENCT LK++VQ L+KAGW  F KE+G
Subjt:  SSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDG

XP_022153553.1 uncharacterized protein LOC111021029 [Momordica charantia]3.3e-10080.63Show/hide
Query:  MEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPLCQSTDGFPQHSSSHDAQLSKKG
        +EELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQ+QVM+ILNVLKNIVTVG TSQPNNLVEP NNSSPRVDPPLCQS +GFPQHSSSHDAQLSKKG
Subjt:  MEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPLCQSTDGFPQHSSSHDAQLSKKG

Query:  QQAPTICQVEFAFQDGQTSKA----NLKGKEKENATNRNAEETTRKEYVRWGKTTEQPPVPLINKEPHLETNRSSFKRKNKVQTVVSKRKGKYQQGFVAY
        QQ PT CQVEF F+D QT K     NLKG+EKEN T             RWGK  EQ PVPLINKEPH + N+SS KRKNKV  VVSKRK KYQQGFVAY
Subjt:  QQAPTICQVEFAFQDGQTSKA----NLKGKEKENATNRNAEETTRKEYVRWGKTTEQPPVPLINKEPHLETNRSSFKRKNKVQTVVSKRKGKYQQGFVAY

Query:  SPSTVPINSLTLQDDPRTLPDNHSSRRQLKRESFHSIPIFYTELLSQLFQGNL
        SPSTVPINS+TLQDDP+TLP+NHSSRRQLKRESFHSIP  YTELLSQLFQGNL
Subjt:  SPSTVPINSLTLQDDPRTLPDNHSSRRQLKRESFHSIPIFYTELLSQLFQGNL

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]6.4e-2761.22Show/hide
Query:  DNHSSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDGSHMKH
        +N S+R+Q     F  IP+ YTELL QLFQ N LAPVPV+P++PPYP WYD   RCDYHAGA+GHSTENCT+LK++VQ L+KAG L F KE+   +K+
Subjt:  DNHSSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDGSHMKH

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]4.0e-2963.44Show/hide
Query:  DNHSSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDG
        +  ++R   K+  F  IP+ YTELL QLFQ N LAPVPV+P++PPYP+WYD   RCDYHAGA+GHSTENCT+LK++VQ L+KAGWL F KE+G
Subjt:  DNHSSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDG

TrEMBL top hitse value%identityAlignment
A0A5D3DEB3 Retrotrans_gag domain-containing protein1.5e-2642.59Show/hide
Query:  INKEPHLETNRSSFKRKNKVQTVVSKRKGKYQQGFVAY--SPSTVPINSLTL------------QDDPRTLPDNHSSRRQLKRESFHSIPIFYTELLSQL
        I+K+   E +   F    K +++  +R  KY+Q F +Y  + S +P NS  L             + P+       S+       F  IP+ YTELL QL
Subjt:  INKEPHLETNRSSFKRKNKVQTVVSKRKGKYQQGFVAY--SPSTVPINSLTL------------QDDPRTLPDNHSSRRQLKRESFHSIPIFYTELLSQL

Query:  FQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSK
         Q   LAP+P+ P+RPPYPKW+D   RCDYHAG VGHSTENC +LK KVQ L+ AGWL F K
Subjt:  FQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSK

A0A6J1D099 Ribonuclease H1.1e-2763.33Show/hide
Query:  SSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDG
        ++R   K+  F  IP+ YTELL QLFQ N LAPVPV+P++PPYP+WYD   RCDYHAGA+ HSTENCT LK++VQ L+KAGW  F KE+G
Subjt:  SSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDG

A0A6J1DHS7 uncharacterized protein LOC1110210291.6e-10080.63Show/hide
Query:  MEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPLCQSTDGFPQHSSSHDAQLSKKG
        +EELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQ+QVM+ILNVLKNIVTVG TSQPNNLVEP NNSSPRVDPPLCQS +GFPQHSSSHDAQLSKKG
Subjt:  MEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPLCQSTDGFPQHSSSHDAQLSKKG

Query:  QQAPTICQVEFAFQDGQTSKA----NLKGKEKENATNRNAEETTRKEYVRWGKTTEQPPVPLINKEPHLETNRSSFKRKNKVQTVVSKRKGKYQQGFVAY
        QQ PT CQVEF F+D QT K     NLKG+EKEN T             RWGK  EQ PVPLINKEPH + N+SS KRKNKV  VVSKRK KYQQGFVAY
Subjt:  QQAPTICQVEFAFQDGQTSKA----NLKGKEKENATNRNAEETTRKEYVRWGKTTEQPPVPLINKEPHLETNRSSFKRKNKVQTVVSKRKGKYQQGFVAY

Query:  SPSTVPINSLTLQDDPRTLPDNHSSRRQLKRESFHSIPIFYTELLSQLFQGNL
        SPSTVPINS+TLQDDP+TLP+NHSSRRQLKRESFHSIP  YTELLSQLFQGNL
Subjt:  SPSTVPINSLTLQDDPRTLPDNHSSRRQLKRESFHSIPIFYTELLSQLFQGNL

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222313.1e-2761.22Show/hide
Query:  DNHSSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDGSHMKH
        +N S+R+Q     F  IP+ YTELL QLFQ N LAPVPV+P++PPYP WYD   RCDYHAGA+GHSTENCT+LK++VQ L+KAG L F KE+   +K+
Subjt:  DNHSSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDGSHMKH

A0A6J1E2J7 Ribonuclease H1.9e-2963.44Show/hide
Query:  DNHSSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDG
        +  ++R   K+  F  IP+ YTELL QLFQ N LAPVPV+P++PPYP+WYD   RCDYHAGA+GHSTENCT+LK++VQ L+KAGWL F KE+G
Subjt:  DNHSSRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAATTGAATATTGAGCTAAAGAAAATAAGAGACGAGATTCAAGAACAAGTCATGGAGGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATAT
TCAAGAGCAAGTCATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGTTGGGGATACTTCTCAACCTAACAATTTAGTCGAACCTCGTAATAATTCATCACCTAGGG
TCGACCCACCTCTTTGTCAATCAACAGATGGATTCCCCCAACACAGTTCGTCACATGACGCTCAGCTTTCCAAGAAAGGCCAACAAGCTCCTACAATCTGTCAGGTTGAG
TTTGCATTCCAAGATGGTCAAACATCAAAGGCTAATTTAAAAGGTAAAGAAAAAGAAAATGCTACCAATAGAAATGCTGAAGAAACTACAAGGAAAGAATATGTTCGATG
GGGAAAAACAACAGAACAACCGCCAGTGCCTTTAATTAATAAAGAGCCACACCTTGAAACGAATAGAAGCTCTTTTAAAAGGAAAAATAAAGTTCAGACAGTAGTTTCGA
AGCGCAAGGGGAAGTACCAACAAGGATTCGTGGCATACAGTCCTTCTACGGTACCCATAAACTCATTGACTCTGCAAGATGATCCACGAACATTACCTGACAATCATAGT
AGTCGGAGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATTCTATACCGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCGTACCCGTAGAGCC
ATTACGACCACCTTATCCAAAGTGGTACGACCTGCAAGTCCGCTGTGATTACCATGCAGGAGCTGTAGGTCATTCAACTGAAAACTGTACTTCACTAAAGCATAAAGTGC
AGGTTCTAATGAAGGCGGGATGGCTAAAGTTTTCAAAGGAAGATGGTTCACACATGAAGCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAATTGAATATTGAGCTAAAGAAAATAAGAGACGAGATTCAAGAACAAGTCATGGAGGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATAT
TCAAGAGCAAGTCATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGTTGGGGATACTTCTCAACCTAACAATTTAGTCGAACCTCGTAATAATTCATCACCTAGGG
TCGACCCACCTCTTTGTCAATCAACAGATGGATTCCCCCAACACAGTTCGTCACATGACGCTCAGCTTTCCAAGAAAGGCCAACAAGCTCCTACAATCTGTCAGGTTGAG
TTTGCATTCCAAGATGGTCAAACATCAAAGGCTAATTTAAAAGGTAAAGAAAAAGAAAATGCTACCAATAGAAATGCTGAAGAAACTACAAGGAAAGAATATGTTCGATG
GGGAAAAACAACAGAACAACCGCCAGTGCCTTTAATTAATAAAGAGCCACACCTTGAAACGAATAGAAGCTCTTTTAAAAGGAAAAATAAAGTTCAGACAGTAGTTTCGA
AGCGCAAGGGGAAGTACCAACAAGGATTCGTGGCATACAGTCCTTCTACGGTACCCATAAACTCATTGACTCTGCAAGATGATCCACGAACATTACCTGACAATCATAGT
AGTCGGAGACAACTAAAGCGAGAGAGCTTTCATTCGATCCCAATATTCTATACCGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCGTACCCGTAGAGCC
ATTACGACCACCTTATCCAAAGTGGTACGACCTGCAAGTCCGCTGTGATTACCATGCAGGAGCTGTAGGTCATTCAACTGAAAACTGTACTTCACTAAAGCATAAAGTGC
AGGTTCTAATGAAGGCGGGATGGCTAAAGTTTTCAAAGGAAGATGGTTCACACATGAAGCATTAG
Protein sequenceShow/hide protein sequence
MEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQEQVMEILNVLKNIVTVGDTSQPNNLVEPRNNSSPRVDPPLCQSTDGFPQHSSSHDAQLSKKGQQAPTICQVE
FAFQDGQTSKANLKGKEKENATNRNAEETTRKEYVRWGKTTEQPPVPLINKEPHLETNRSSFKRKNKVQTVVSKRKGKYQQGFVAYSPSTVPINSLTLQDDPRTLPDNHS
SRRQLKRESFHSIPIFYTELLSQLFQGNLLAPVPVEPLRPPYPKWYDLQVRCDYHAGAVGHSTENCTSLKHKVQVLMKAGWLKFSKEDGSHMKH