; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g03280 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g03280
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionexosome complex exonuclease RRP46 homolog
Genome locationchr8:2385523..2388298
RNA-Seq ExpressionMoc08g03280
SyntenyMoc08g03280
Gene Ontology termsGO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0006259 - DNA metabolic process (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0004540 - ribonuclease activity (molecular function)
GO:0004536 - deoxyribonuclease activity (molecular function)
GO:0004527 - exonuclease activity (molecular function)
GO:0042802 - identical protein binding (molecular function)
GO:0003727 - single-stranded RNA binding (molecular function)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131722.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia]1.9e-132100Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
        QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

XP_022951618.1 exosome complex exonuclease RRP46 homolog [Cucurbita moschata]6.7e-12595.02Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQV  EPLE+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSK
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSK

XP_023002484.1 exosome complex exonuclease RRP46 homolog [Cucurbita maxima]1.5e-12495.02Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQV  EPLE+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSK
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSK

XP_023538111.1 exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]1.1e-12495.02Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEMDRDDGRTANQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQV  EPLE+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSK
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSK

XP_038885208.1 exosome complex exonuclease RRP46 homolog [Benincasa hispida]5.7e-12494.63Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSV+P+GS QVVDEPLEHGIITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
        QG+MSVDDYI CLERG AA+AKMS FLRRSLQPQLP DSSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

TrEMBL top hitse value%identityAlignment
A0A0A0LLJ9 Uncharacterized protein5.2e-12392.98Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAI CCLSE+GYVILDPTK+EE+KMKA VHLVFPN+PVSV+P+GSTQ V EPLEHGIITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
        QGAMSVDDYIHCLERGRAAT KMS FLRRSLQPQLP +SSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

A0A5A7VGL5 Exosome complex exonuclease RRP46-like protein2.6e-12292.56Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAI CCLSE+GYVILDPTK+EE+KMKA VHLVFPN+PVSV+P+GSTQ V EPLEHG+ITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
        QGAMSVDDYIHCLERGRAAT KMS FLRRSLQPQL  DSSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

A0A6J1BU99 exosome complex exonuclease RRP46 homolog isoform X19.4e-133100Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
        QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

A0A6J1GI69 exosome complex exonuclease RRP46 homolog3.2e-12595.02Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQV  EPLE+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSK
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSK

A0A6J1KQK5 exosome complex exonuclease RRP46 homolog7.2e-12595.02Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTSI+VQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQV  EPLE+GIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSK
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSK

SwissProt top hitse value%identityAlignment
Q84T68 Exosome complex exonuclease RRP46 homolog3.0e-8365.97Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME  R DGR  NQLRP +C+ N L+RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTS+I+QV+ +DG+LLPCAINA CAALV AGIPLKHLAVAI C + E G VILD  K EEQ++K+F HLVFPNS  S   K   Q  +E  E G+ITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPAD
         G MS +DY  C+ERG AA++++SDF+R +LQ Q P D
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPAD

Q9CRA8 Exosome complex component RRP461.4e-3235.62Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ +  ++P T+ ++++QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIHDDG

Query:  ALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCL
        +LL C +NA+C ALVDAG+P++ L   + C L   G ++LDPT  +E++ +A +     ++                 E  ++ S T+G  S  +   CL
Subjt:  ALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCL

Query:  ERGRAATAKMSDFLRRSLQ
           +AA+  +  F R SLQ
Subjt:  ERGRAATAKMSDFLRRSLQ

Q9LX74 Exosome complex exonuclease RRP46 homolog3.7e-10273.97Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

Q9NQT4 Exosome complex component RRP462.1e-3336.07Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ + T++P T+ ++++QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIHDDG

Query:  ALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCL
        +LL C +NA+C ALVDAG+P++ L   + C L   G ++LDPT  +E++ +A +                     + +E  ++ S T+G  S  +   CL
Subjt:  ALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCL

Query:  ERGRAATAKMSDFLRRSLQ
           +AA+  +  F R SLQ
Subjt:  ERGRAATAKMSDFLRRSLQ

Q9SP08 Exosome complex component RRP41 homolog1.7e-1431.51Show/hide
Query:  RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLER----------ECEMILKRTLQSICIL
        R DGR  N++R +     V+++A GSA +  G+TKV+AAVYGP+    K++  +     V+ +    Q    +R          E  +++++T+++  + 
Subjt:  RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLER----------ECEMILKRTLQSICIL

Query:  TINPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVA
         + P++   I +QV+  DG      INA+  AL DAGIP++ LAV+
Subjt:  TINPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVA

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein2.6e-10373.97Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein2.6e-10373.97Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

AT3G46210.3 Ribosomal protein S5 domain 2-like superfamily protein2.6e-10373.97Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

AT3G46210.4 Ribosomal protein S5 domain 2-like superfamily protein2.6e-10373.97Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

AT3G46210.5 Ribosomal protein S5 domain 2-like superfamily protein2.6e-10373.97Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT
        TTS+I+QV+HDDG+LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGACAGAGATGATGGTCGTACCGCCAATCAGCTGAGACCGCTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCACGGCTCCGCCAGTTGGTCCCAAGGCGA
TACCAAAGTTCTTGCCGCAGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAGAATCCGGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGACAGATTG
GAAAGCTGGAAAGGGAGTGTGAGATGATTTTAAAGAGGACATTGCAGAGTATTTGCATTTTAACTATTAATCCCAATACCACAACATCTATTATTGTTCAGGTTATTCAT
GATGATGGAGCTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCCTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTGCTGTTGTTTGTCTGA
GAGTGGATATGTTATTTTGGATCCAACAAAACTAGAGGAGCAGAAAATGAAGGCATTTGTGCATTTGGTCTTTCCAAATTCACCTGTCTCAGTAATTCCCAAAGGATCTA
CACAAGTTGTAGATGAACCATTAGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCAACT
GCAAAGATGTCTGATTTTTTGAGGAGAAGCTTACAGCCTCAACTCCCAGCTGACTCCTCAAAAGCTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGACAGAGATGATGGTCGTACCGCCAATCAGCTGAGACCGCTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCACGGCTCCGCCAGTTGGTCCCAAGGCGA
TACCAAAGTTCTTGCCGCAGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAGAATCCGGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGACAGATTG
GAAAGCTGGAAAGGGAGTGTGAGATGATTTTAAAGAGGACATTGCAGAGTATTTGCATTTTAACTATTAATCCCAATACCACAACATCTATTATTGTTCAGGTTATTCAT
GATGATGGAGCTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCCTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTGCTGTTGTTTGTCTGA
GAGTGGATATGTTATTTTGGATCCAACAAAACTAGAGGAGCAGAAAATGAAGGCATTTGTGCATTTGGTCTTTCCAAATTCACCTGTCTCAGTAATTCCCAAAGGATCTA
CACAAGTTGTAGATGAACCATTAGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCAACT
GCAAAGATGTCTGATTTTTTGAGGAGAAGCTTACAGCCTCAACTCCCAGCTGACTCCTCAAAAGCTGTCTGA
Protein sequenceShow/hide protein sequence
MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIH
DDGALLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAAT
AKMSDFLRRSLQPQLPADSSKAV