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Moc08g04800 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g04800
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description60S ribosomal protein L39
Genome locationchr8:3431285..3432463
RNA-Seq ExpressionMoc08g04800
SyntenyMoc08g04800
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR020083 - Ribosomal protein L39e, conserved site
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAE6165017.1 unnamed protein product [Arabidopsis arenosa]3.2e-2175.32Show/hide
Query:  ILVSFGKVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +L++F  + A CS       +S  FKMPSHK+FMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  ILVSFGKVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

CBI21094.3 unnamed protein product, partial [Vitis vinifera]1.5e-2190Show/hide
Query:  VAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +AAD S  KMPSHKTF+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  VAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

EOA28252.1 hypothetical protein CARUB_v10024445mg, partial [Capsella rubella]2.5e-2167.44Show/hide
Query:  FEDIFGCFGILVSFGKVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        ++  F  F + + FG V           A S  FKMPSHK+FMIKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  FEDIFGCFGILVSFGKVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-2383.1Show/hide
Query:  KVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +VS  C  F A+AA S   KMPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  KVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]2.0e-2383.1Show/hide
Query:  KVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +VS  C  F A+AA S   KMPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  KVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

TrEMBL top hitse value%identityAlignment
A0A0A0LM35 Uncharacterized protein3.2e-2288.06Show/hide
Query:  CSPFEA-VAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        CS F A VAA   I KMPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  CSPFEA-VAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A0D3C210 Uncharacterized protein2.0e-2173.42Show/hide
Query:  FGILVSFGKVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        F + +SFG V             S  FKMPSHK+FMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  FGILVSFGKVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A1R3J7F3 Ribosomal protein L39e1.6e-2198.11Show/hide
Query:  FKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        FKMPSHKTFMIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  FKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6J1HDM7 uncharacterized protein LOC1114629689.8e-2483.1Show/hide
Query:  KVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +VS  C  F A+AA S   KMPSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  KVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

R0FYV5 Uncharacterized protein (Fragment)1.2e-2167.44Show/hide
Query:  FEDIFGCFGILVSFGKVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        ++  F  F + + FG V           A S  FKMPSHK+FMIKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  FEDIFGCFGILVSFGKVSACCSPFEAVAADSSIFKMPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-14.0e-2296.08Show/hide
Query:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+FMIKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51425 60S ribosomal protein L392.0e-2194.12Show/hide
Query:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51426 60S ribosomal protein L39-22.0e-2194.12Show/hide
Query:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q5SMI4 60S ribosomal protein L39-31.5e-2194.12Show/hide
Query:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q6KAJ8 60S ribosomal protein L39-12.0e-2194.12Show/hide
Query:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein3.2e-1997.73Show/hide
Query:  MIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MIKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT3G02190.1 Ribosomal protein L39 family protein9.1e-2292.16Show/hide
Query:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+FMIKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT4G31985.1 Ribosomal protein L39 family protein2.8e-2396.08Show/hide
Query:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+FMIKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGATACAAAGCCTCTGAGACAGACGAAGCAAACGAATCAAAGCAGACGAAATCGAGGTGAATCGTCGGAGAAGGAGAAGGCGCAAGCAGTCGGAAGAATAATCCC
GACGAACGGAGAAGAAGACACGAACCATCACTATTTTTCGAATTTGGGGATATTTTTGGAGGTTTTTGAATTTGAGGGATTTGAGGATATTTTTGGATGTTTTGGTATTT
TAGTTTCTTTTGGAAAGGTTTCTGCTTGTTGCTCGCCGTTCGAAGCCGTCGCAGCCGATTCTTCAATCTTCAAGATGCCGTCTCACAAGACCTTCATGATTAAGAAGAAG
TTGGCGAAAAAGATGCGACAGAACAGGCCTATTCCTCACTGGATTCGCCTGAGGACCGACAATACCATCAGGTATAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCT
CGGATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGGATACAAAGCCTCTGAGACAGACGAAGCAAACGAATCAAAGCAGACGAAATCGAGGTGAATCGTCGGAGAAGGAGAAGGCGCAAGCAGTCGGAAGAATAATCCC
GACGAACGGAGAAGAAGACACGAACCATCACTATTTTTCGAATTTGGGGATATTTTTGGAGGTTTTTGAATTTGAGGGATTTGAGGATATTTTTGGATGTTTTGGTATTT
TAGTTTCTTTTGGAAAGGTTTCTGCTTGTTGCTCGCCGTTCGAAGCCGTCGCAGCCGATTCTTCAATCTTCAAGATGCCGTCTCACAAGACCTTCATGATTAAGAAGAAG
TTGGCGAAAAAGATGCGACAGAACAGGCCTATTCCTCACTGGATTCGCCTGAGGACCGACAATACCATCAGGTATAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCT
CGGATTTTGA
Protein sequenceShow/hide protein sequence
MTDTKPLRQTKQTNQSRRNRGESSEKEKAQAVGRIIPTNGEEDTNHHYFSNLGIFLEVFEFEGFEDIFGCFGILVSFGKVSACCSPFEAVAADSSIFKMPSHKTFMIKKK
LAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF