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Moc08g06500 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g06500
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPolyadenylate-binding protein
Genome locationchr8:4793506..4794636
RNA-Seq ExpressionMoc08g06500
SyntenyMoc08g06500
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0003727 - single-stranded RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3476476.1 polyadenylate-binding protein 2-like [Gossypium australe]4.1e-0444.78Show/hide
Query:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        ++T+FN VYV ++ E T D  L+ I     EI SAVV +   G+SKCFGFV  ++A D+ KA   L+
Subjt:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
MBA0722293.1 hypothetical protein [Gossypium laxum]4.1e-0444.78Show/hide
Query:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        ++T+FN VYV ++ E T D  L+ I     EI SAVV +   G+SKCFGFV  ++A D+ KA   L+
Subjt:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
MBA0747225.1 hypothetical protein [Gossypium gossypioides]4.1e-0444.78Show/hide
Query:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        ++T+FN VYV ++ E T D  L+ I     EI SAVV +   G+SKCFGFV  ++A D+ KA   L+
Subjt:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
MBA0867995.1 hypothetical protein [Gossypium schwendimanii]4.1e-0444.78Show/hide
Query:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        ++T+FN VYV ++ E T D  L+ I     EI SAVV +   G+SKCFGFV  ++A D+ KA   L+
Subjt:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
RDX63406.1 Polyadenylate-binding protein 2, partial [Mucuna pruriens]1.4e-0444.12Show/hide
Query:  FNETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        FN+T+FN VYV ++ + TAD  L+ I      I SAV+ +   G+SKCFGFV  ++  D+ KA  GL+
Subjt:  FNETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
TrEMBL top hitse value%identityAlignment
A0A371EBJ9 Polyadenylate-binding protein (Fragment)6.8e-0544.12Show/hide
Query:  FNETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        FN+T+FN VYV ++ + TAD  L+ I      I SAV+ +   G+SKCFGFV  ++  D+ KA  GL+
Subjt:  FNETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
A0A6A2XJJ3 Polyadenylate-binding protein2.0e-0444.78Show/hide
Query:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        N+ +FN VYV ++ + T D  L+ I     EI SAVV +   G+SKCFGFV  D+A D+ KA   L+
Subjt:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
A0A6P4Q4W3 Polyadenylate-binding protein2.0e-0444.78Show/hide
Query:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        ++T+FN VYV ++ E T D  L+ I     EI SAVV +   G+SKCFGFV  ++A D+ KA   L+
Subjt:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
A0A7J9CFN8 Polyadenylate-binding protein2.0e-0444.78Show/hide
Query:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        ++T+FN VYV ++ E T D  L+ I     EI SAVV +   G+SKCFGFV  ++A D+ KA   L+
Subjt:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
A0A7J9CGG6 Uncharacterized protein2.0e-0444.78Show/hide
Query:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        ++T+FN VYV ++ E T D  L+ I     EI SAVV +   G+SKCFGFV  ++A D+ KA   L+
Subjt:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
SwissProt top hitse value%identityAlignment
P42731 Polyadenylate-binding protein 24.3e-0440.3Show/hide
Query:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        N+T+F  VYV ++ E T D  L+       +I SAVV K   G+SK FGFV  ++A D+ +A   L+
Subjt:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
Arabidopsis top hitse value%identityAlignment
AT2G23350.1 poly(A) binding protein 43.3e-0434.33Show/hide
Query:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        ++ +F  VYV ++ E T D  L+    +   I SAVV +   G+S+CFGFV  ++  D+ +A   L+
Subjt:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
AT4G34110.1 poly(A) binding protein 23.0e-0540.3Show/hide
Query:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD
        N+T+F  VYV ++ E T D  L+       +I SAVV K   G+SK FGFV  ++A D+ +A   L+
Subjt:  NETEFNIVYVNSILEGTADGGLQIILLRCAEI-SAVVTKKVIGRSKCFGFVYLDDAYDSVKATNGLD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTTCTCACAAATTCAGCAGTTCCTTATTCCTTCCGTTTCCCCGTAATAGAGCCGCAAGGGGGATTGACTGAATCGCCACTAAGTGACACGATTTCATTACAATT
GTGCTGTCTCGTCGGTATCTCCACATCCTGGAAGGACGGGATTATCAATATTTTTGTTCAGGACGCTGGATATATTATTTTCAATGAGACAGAGTTTAACATTGTGTATG
TAAATAGTATATTGGAGGGAACTGCAGATGGTGGTCTGCAGATCATTCTCTTGAGATGTGCGGAAATCAGTGCTGTAGTTACAAAGAAGGTAATTGGAAGGTCAAAGTGT
TTCGGTTTTGTTTACTTAGATGATGCATATGATTCTGTGAAAGCAACTAATGGACTTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTTCTCACAAATTCAGCAGTTCCTTATTCCTTCCGTTTCCCCGTAATAGAGCCGCAAGGGGGATTGACTGAATCGCCACTAAGTGACACGATTTCATTACAATT
GTGCTGTCTCGTCGGTATCTCCACATCCTGGAAGGACGGGATTATCAATATTTTTGTTCAGGACGCTGGATATATTATTTTCAATGAGACAGAGTTTAACATTGTGTATG
TAAATAGTATATTGGAGGGAACTGCAGATGGTGGTCTGCAGATCATTCTCTTGAGATGTGCGGAAATCAGTGCTGTAGTTACAAAGAAGGTAATTGGAAGGTCAAAGTGT
TTCGGTTTTGTTTACTTAGATGATGCATATGATTCTGTGAAAGCAACTAATGGACTTGATTGA
Protein sequenceShow/hide protein sequence
MFFLTNSAVPYSFRFPVIEPQGGLTESPLSDTISLQLCCLVGISTSWKDGIINIFVQDAGYIIFNETEFNIVYVNSILEGTADGGLQIILLRCAEISAVVTKKVIGRSKC
FGFVYLDDAYDSVKATNGLD