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Moc08g07510 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g07510
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein RADIALIS-like 6
Genome locationchr8:5492061..5493134
RNA-Seq ExpressionMoc08g07510
SyntenyMoc08g07510
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152694.1 protein RADIALIS-like 4 [Cucumis sativus]6.5e-3383.52Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ
        +SSSSWT KQNKKFEDAL LY EDTP+RWQKVARAVGGKT EEVK HYDIL+QDLMHIESGKVPLPNYKP   NG   D EQRLMKNLKLQ
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ

XP_008444724.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]4.5e-3485.71Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ
        +SSSSWT KQNKKFEDAL LY EDTP+RWQKVARAVGGKTAEEVK HYDIL+QDLMHIESGKVPLPNYKP V NG   D EQRLMKNLKLQ
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ

XP_022144207.1 protein RADIALIS-like 6 [Momordica charantia]9.7e-45100Show/hide
Query:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ
        MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ
Subjt:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]2.0e-3486.81Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ
        SSSSSWT KQNKKFEDALALY EDTP+RWQKVAR VGGKTAEEVK HYDILVQDLMHIESGK+PLPNYKP VSNG     EQRLMKNLKLQ
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]3.5e-3486.81Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGD---HEQRLMKNLKLQ
        SSSSSWT KQNKKFEDAL LY EDTP+RWQKVARAVGGKTAEEVK HYDIL+QDLMHIESGKVPLPNYKP VSNG     EQRLMKNLKLQ
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGD---HEQRLMKNLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0LPB1 SANT domain-containing protein3.2e-3383.52Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ
        +SSSSWT KQNKKFEDAL LY EDTP+RWQKVARAVGGKT EEVK HYDIL+QDLMHIESGKVPLPNYKP   NG   D EQRLMKNLKLQ
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ

A0A1S3BBS2 protein RADIALIS-like 42.2e-3485.71Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ
        +SSSSWT KQNKKFEDAL LY EDTP+RWQKVARAVGGKTAEEVK HYDIL+QDLMHIESGKVPLPNYKP V NG   D EQRLMKNLKLQ
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ

A0A6J1CT09 protein RADIALIS-like 64.7e-45100Show/hide
Query:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ
        MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ
Subjt:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ

A0A6J1HFA3 protein RADIALIS-like 49.9e-3586.81Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ
        SSSSSWT KQNKKFEDALALY EDTP+RWQKVAR VGGKTAEEVK HYDILVQDLMHIESGK+PLPNYKP VSNG     EQRLMKNLKLQ
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ

A0A6J1K2Q1 protein RADIALIS-like 49.9e-3586.81Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ
        SSSSSWT KQNKKFEDALALY EDTP+RWQKVAR VGGKTAEEVK HYDILVQDLMHIESGK+PLPNYKP VSNG     EQRLMKNLKLQ
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNG---DHEQRLMKNLKLQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 19.8e-2456.84Show/hide
Query:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPA--VSNG--DHEQRLMKNLKLQ
        M++ SS SWT KQNK FE ALA Y +DTP RWQ VA+ VGGKT EEVK HY++LVQD+  IE+G VP PNY+ +   +NG    E++ M+N++LQ
Subjt:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPA--VSNG--DHEQRLMKNLKLQ

Q1A173 Protein RADIALIS-like 62.3e-2563.74Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSN----GDHEQRLMKNLKL
        SS S WT  QNK FE ALA+Y +DTP+RW  VA+AVGGKT EEVK HYDILV+DL++IE+G+VPLPNYK   SN     D + R MKNLK+
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSN----GDHEQRLMKNLKL

Q58FS3 Transcription factor RADIALIS2.1e-2154.02Show/hide
Query:  SSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ
        S   W+ K+NK FE ALA+Y +DTP+RW  VARAV G+T EEVK HY+ILV+D+ +IESGKVP PNY+    N   +++  +NLK++
Subjt:  SSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ

Q8GW75 Protein RADIALIS-like 58.9e-2563.83Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKP----AVSNG--DHEQRLMKNLKLQ
        SSSSSWT KQNK FE ALA+Y +DTP+RWQ VA+AVG K+AEEVK HYDILV+DLM+IE   VPLP YK     + S G  D + RLMKN+++Q
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKP----AVSNG--DHEQRLMKNLKLQ

Q9SIJ5 Protein RADIALIS-like 27.1e-2253.12Show/hide
Query:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDH-----EQRLMKNLKLQ
        M++  S SWT KQNK FE ALA+Y +DTP+RW  VARAVGGKT EE K  YD+LV+D+  IE+G VP P+YK    N +      E++ M+++KLQ
Subjt:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDH-----EQRLMKNLKLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.3e-2663.83Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKP----AVSNG--DHEQRLMKNLKLQ
        SSSSSWT KQNK FE ALA+Y +DTP+RWQ VA+AVG K+AEEVK HYDILV+DLM+IE   VPLP YK     + S G  D + RLMKN+++Q
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKP----AVSNG--DHEQRLMKNLKLQ

AT1G75250.1 RAD-like 64.5e-2468.92Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSN
        SS S WT  QNK FE ALA+Y +DTP+RW  VA+AVGGKT EEVK HYDILV+DL++IE+G+VPLPNYK   SN
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSN

AT1G75250.2 RAD-like 61.7e-2663.74Show/hide
Query:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSN----GDHEQRLMKNLKL
        SS S WT  QNK FE ALA+Y +DTP+RW  VA+AVGGKT EEVK HYDILV+DL++IE+G+VPLPNYK   SN     D + R MKNLK+
Subjt:  SSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSN----GDHEQRLMKNLKL

AT2G21650.1 Homeodomain-like superfamily protein5.0e-2353.12Show/hide
Query:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDH-----EQRLMKNLKLQ
        M++  S SWT KQNK FE ALA+Y +DTP+RW  VARAVGGKT EE K  YD+LV+D+  IE+G VP P+YK    N +      E++ M+++KLQ
Subjt:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDH-----EQRLMKNLKLQ

AT4G39250.1 RAD-like 17.0e-2556.84Show/hide
Query:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPA--VSNG--DHEQRLMKNLKLQ
        M++ SS SWT KQNK FE ALA Y +DTP RWQ VA+ VGGKT EEVK HY++LVQD+  IE+G VP PNY+ +   +NG    E++ M+N++LQ
Subjt:  MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPA--VSNG--DHEQRLMKNLKLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACAAGTTCTAGCTCCTCATGGACGCATAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTATACCACGAGGACACGCCAGAGCGGTGGCAAAAGGTG
GCCAGGGCTGTAGGTGGAAAAACGGCTGAGGAAGTAAAATGTCATTATGATATATTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGGTCCCTCTTCCCAAC
TACAAGCCCGCTGTATCCAATGGTGATCATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACAAGTTCTAGCTCCTCATGGACGCATAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTATACCACGAGGACACGCCAGAGCGGTGGCAAAAGGTG
GCCAGGGCTGTAGGTGGAAAAACGGCTGAGGAAGTAAAATGTCATTATGATATATTGGTGCAAGATCTCATGCATATAGAATCTGGAAAGGTCCCTCTTCCCAAC
TACAAGCCCGCTGTATCCAATGGTGATCATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA
Protein sequenceShow/hide protein sequence
MATSSSSSWTHKQNKKFEDALALYHEDTPERWQKVARAVGGKTAEEVKCHYDILVQDLMHIESGKVPLPNYKPAVSNGDHEQRLMKNLKLQ