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Moc08g07620 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g07620
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionSm protein F
Genome locationchr8:5565760..5567786
RNA-Seq ExpressionMoc08g07620
SyntenyMoc08g07620
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016487 - Sm-like protein Lsm6/SmF
IPR034100 - Small nuclear ribonucleoprotein F


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4357808.1 hypothetical protein F8388_024419 [Cannabis sativa]1.2e-3996.51Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        SIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIED ERE
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

KAF4391041.1 hypothetical protein F8388_024873 [Cannabis sativa]3.2e-4087Show/hide
Query:  SSLYKCYCSVFITSSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        SSL   + S     SIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIED ERE
Subjt:  SSLYKCYCSVFITSSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

XP_004146017.2 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus]3.2e-4097.67Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIED ER+
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

XP_022144158.1 probable small nuclear ribonucleoprotein F [Momordica charantia]5.0e-41100Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

XP_030480982.1 probable small nuclear ribonucleoprotein F [Cannabis sativa]1.2e-3996.51Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        SIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIED ERE
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

TrEMBL top hitse value%identityAlignment
A0A1S3CKH5 Sm protein F1.6e-4097.67Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIED ER+
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

A0A5D3DWN8 Sm protein F1.6e-4097.67Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIED ER+
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

A0A6J1CSK0 Sm protein F2.4e-41100Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

A0A7J6FQ66 Sm protein F6.0e-4096.51Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        SIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIED ERE
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

A0A7J6H7Z8 Sm protein F1.6e-4087Show/hide
Query:  SSLYKCYCSVFITSSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        SSL   + S     SIPVNPKPFLNNLTGKTV VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIED ERE
Subjt:  SSLYKCYCSVFITSSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

SwissProt top hitse value%identityAlignment
P62306 Small nuclear ribonucleoprotein F1.2e-3279.75Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

P62307 Small nuclear ribonucleoprotein F1.2e-3279.75Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

P62321 Small nuclear ribonucleoprotein F1.2e-3279.75Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

Q3T0Z8 Small nuclear ribonucleoprotein F1.2e-3279.75Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        S+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

Q9SUM2 Probable small nuclear ribonucleoprotein F2.2e-3985.06Show/hide
Query:  SSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        ++IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+ED +++
Subjt:  SSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

Arabidopsis top hitse value%identityAlignment
AT2G14285.1 Small nuclear ribonucleoprotein family protein3.1e-2583.61Show/hide
Query:  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+ED +++
Subjt:  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

AT2G43810.1 Small nuclear ribonucleoprotein family protein7.2e-1446.97Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL

AT2G43810.2 Small nuclear ribonucleoprotein family protein7.2e-1446.97Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL

AT4G30220.1 small nuclear ribonucleoprotein F1.5e-4085.06Show/hide
Query:  SSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        ++IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+ED +++
Subjt:  SSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE

AT4G30220.2 small nuclear ribonucleoprotein F5.3e-4178.35Show/hide
Query:  YKCYCSVFITSSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE
        + C C   +  +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+ED +++
Subjt:  YKCYCSVFITSSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAGCGAAAGGGAAAAAGGAGGGAAAACAAACCCTAAAGAAACCCTAGGGAGAGCCCATCTTCTTCGTCTTCCTGTTCTTTTGAGCCTCCACAGATTCCATAGAAG
TTCTTTCTGGTCATTTCCGAACCATGGTAAACAAGATTTTCCTTATCCTTGCCTTTCGAGTCTTTATAAATGTTATTGTTCCGTTTTCATCACTTCGAGCATCCCAGTTA
ACCCGAAGCCATTCTTGAACAATTTGACCGGAAAGACTGTGGTGGTGAAACTCAAGTGGGGGATGGAGTACAAAGGCTTTCTCGTCTCAGTGGACTCGTACATGAACTTA
CAGCTTGCCAATACTGAGGAATATATTGACGGACAATTTACTGGGAGTCTAGGAGAAATATTGATCAGGTGTAATAATGTTCTTTACCTTCGTGGAGTACCGGAGGATGA
AGAAATTGAAGATGTGGAGCGTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCAGCGAAAGGGAAAAAGGAGGGAAAACAAACCCTAAAGAAACCCTAGGGAGAGCCCATCTTCTTCGTCTTCCTGTTCTTTTGAGCCTCCACAGATTCCATAGAAG
TTCTTTCTGGTCATTTCCGAACCATGGTAAACAAGATTTTCCTTATCCTTGCCTTTCGAGTCTTTATAAATGTTATTGTTCCGTTTTCATCACTTCGAGCATCCCAGTTA
ACCCGAAGCCATTCTTGAACAATTTGACCGGAAAGACTGTGGTGGTGAAACTCAAGTGGGGGATGGAGTACAAAGGCTTTCTCGTCTCAGTGGACTCGTACATGAACTTA
CAGCTTGCCAATACTGAGGAATATATTGACGGACAATTTACTGGGAGTCTAGGAGAAATATTGATCAGGTGTAATAATGTTCTTTACCTTCGTGGAGTACCGGAGGATGA
AGAAATTGAAGATGTGGAGCGTGAGTAG
Protein sequenceShow/hide protein sequence
MFSEREKGGKTNPKETLGRAHLLRLPVLLSLHRFHRSSFWSFPNHGKQDFPYPCLSSLYKCYCSVFITSSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNL
QLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE