; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g10370 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g10370
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr8:7706205..7707446
RNA-Seq ExpressionMoc08g10370
SyntenyMoc08g10370
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA3023561.1 retroelement pol poly [Olea europaea subsp. europaea]5.8e-8957.29Show/hide
Query:  KTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVANAVFDLVHC
        K IGKG   + LY+L  +    V   +   +  VS  +WHNR+ H S K L  LKD L ++T+ +    PC ICPLAKQRRLSF S N+++N  FDL+HC
Subjt:  KTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVANAVFDLVHC

Query:  DI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQNSVVEHKH
        DI   Y   +H G+RYF+T+VDD  R+TW+++++QKS+A+  V RFF LV TQF   IK FRSDNA ELSF DFF EKGV HQFSCV  P+QNSVVE KH
Subjt:  DI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQNSVVEHKH

Query:  QYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPPRVK
        Q+LL++AR+L FQSRVPI+FW ECVLT  +LINRT +P L   TPF  LHGR ANYS +RVFGCL FASTL ++R+ F PRA   VFLGYP  +K
Subjt:  QYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPPRVK

KAA0068025.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]9.9e-8148.51Show/hide
Query:  DKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVS---FPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVAN
        DK   K IG     + LYIL  +QP         ++C V+     +WH RM HPS + L +L+  L     +   +  C ICPLAKQR+LSFTS N++++
Subjt:  DKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVS---FPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVAN

Query:  AVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQ
          FDL+H DI   + + T++ + YFLTIVDD +RYTWVF+++ KS+ ++++P FF+L++TQ+GK+IK+ RSDNA +L FT FF +KGV HQ+SCV  P+Q
Subjt:  AVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQ

Query:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPP
        NSVVE KHQ++L+ AR+L FQS+VP+ FWG+C++T  +LI+RTPS  L+W  PF +L+  + +Y+ ++VFG LC+AS+L  + S F PRAIPSVF+GYP 
Subjt:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPP

Query:  RVK
         +K
Subjt:  RVK

KAG7588381.1 Integrase catalytic core [Arabidopsis suecica]6.4e-8048.34Show/hide
Query:  QDKLLLKTIGKGDFSKSLYILAREQPLG-VQLKTPHTVCMVSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVANA
        QD +    IG+G+   +LY+L  +  +      T  T  +V   +WH+R+ HPS++    + D+L F   +  +   C ICPLAKQ+ L F S+NNV ++
Subjt:  QDKLLLKTIGKGDFSKSLYILAREQPLG-VQLKTPHTVCMVSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVANA

Query:  VFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQN
         FDLVH D+   +  PTH G+RYFLTIVDD +R TW++L+R KS  LT+ P F ++V+TQ+  ++K  RSDNAPEL F + F  KG+ H FSC   PEQN
Subjt:  VFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQN

Query:  SVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPPR
        SVVE KHQ++L++ARSL+FQ+ VP+ +WGECVLT  FLINR P+P LK  +P   L  ++ +Y   RVFGCLC++ST + +R+ F PRA P +FLGYPP 
Subjt:  SVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPPR

Query:  VK
        VK
Subjt:  VK

TYK18103.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]9.9e-8148.51Show/hide
Query:  DKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVS---FPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVAN
        DK   K IG     + LYIL  +QP         ++C V+     +WH RM HPS + L +L+  L     +   +  C ICPLAKQR+LSFTS N++++
Subjt:  DKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVS---FPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVAN

Query:  AVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQ
          FDL+H DI   + + T++ + YFLTIVDD +RYTWVF+++ KS+ ++++P FF+L++TQ+GK+IK+ RSDNA +L FT FF +KGV HQ+SCV  P+Q
Subjt:  AVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQ

Query:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPP
        NSVVE KHQ++L+ AR+L FQS+VP+ FWG+C++T  +LI+RTPS  L+W  PF +L+  + +Y+ ++VFG LC+AS+L  + S F PRAIPSVF+GYP 
Subjt:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPP

Query:  RVK
         +K
Subjt:  RVK

XP_038895765.1 uncharacterized protein LOC120083929 [Benincasa hispida]1.1e-8258.17Show/hide
Query:  HPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVANAVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVP
        HPSL  L ALK +L  +  S  +  PC ICPL KQ++LSF   NN ++AVFDL+H +I   + +PTH G ++FLTIVDD SR+TWVF+++ KS  L ++P
Subjt:  HPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVANAVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVP

Query:  RFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDT
        +FF  V+TQ+ K IK FRSDNAPELSF +FF ++GV HQ+SCVG PEQNSVVE KHQ+LL+++R+L FQSR P++FW ECVLT  +LINRT SP L W T
Subjt:  RFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDT

Query:  PFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPPRVK
        P+  L G +A+YS IR F CLCFASTL+  RS F PR +P+ F+GYPP +K
Subjt:  PFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPPRVK

TrEMBL top hitse value%identityAlignment
A0A2Z7AT15 Cysteine-rich RLK (Receptor-like protein kinase) 82.6e-7949.01Show/hide
Query:  QDKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVC---MVSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVA
        QD   ++ IG G    +LY+L  +QP       P  +C   + +  +WH RM HPS   L +LK++L  N ++T  +  C  C L+KQRRL   SRNN++
Subjt:  QDKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVC---MVSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVA

Query:  NAVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPE
          +F+L+H D    +   +  GFR+F TIVDD SRYTWV++++ KS+ L++ P F R+V TQFG ++K  RSDNAPEL F DFF + G+ H  SCV  P+
Subjt:  NAVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPE

Query:  QNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYP
        QNSVVE KHQ++L++AR+LLFQS +P+ +W +C+ T  +LINRTPSP L   TPF  LHG++ +YSH++VFGCLC+ASTL S R  F PRAI  VF+GYP
Subjt:  QNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYP

Query:  PRVK
        P  K
Subjt:  PRVK

A0A2Z7D256 Integrase catalytic domain-containing protein1.7e-7848.84Show/hide
Query:  QDKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVSFP---IWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVA
        QD    KTIG G    +LY+L +       + +P  VC VS P   +WH RM HPS   L +LK+ILHF++ +   +  C +C ++KQ+RL F S N  A
Subjt:  QDKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVSFP---IWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVA

Query:  NAVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPE
           F+L+H D+   +   +  G+R+FLTIVDD +R+TWV+++R KS   ++ P F R+V TQFG  IK  RSDNAP+L F + F E G+ H +SCV  P+
Subjt:  NAVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPE

Query:  QNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYP
        QNS+VE KHQ++L++AR+L+FQS VPI +W +C++T  +LINRTPS  L   TPF  LHG+   YSH+++FGCLC+ASTL S R  F PRAI  VFLGYP
Subjt:  QNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYP

Query:  P
        P
Subjt:  P

A0A438HDI8 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-7850.5Show/hide
Query:  QDKLLLKTIGKGDFSKSLYILARE--QPLGVQLKTPHTVCMVSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVAN
        QD    K IG G    +LY+L     + +       +        +WH R+ HPS   L  LK  L   ++  T L  C ICPLAKQ+RL F   NN+++
Subjt:  QDKLLLKTIGKGDFSKSLYILARE--QPLGVQLKTPHTVCMVSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVAN

Query:  AVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQ
        + FDL+HCDI   +  PTH GFRYFLTIVDD +R TWV L+R KS+  T+ P+FF +VKT+FG +IK  RSDNAPEL+ ++ F +  V H FSCV  P+Q
Subjt:  AVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQ

Query:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYP
        NSVVE KHQ++L++AR+L FQS +PI +WG+CVLT  +LINR PSP L   TPF  LH +  +YSH++ FGCLC++STL S R  F PRA+P VFLGYP
Subjt:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYP

A0A5A7VQN7 Cysteine-rich RLK (Receptor-like protein kinase) 84.8e-8148.51Show/hide
Query:  DKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVS---FPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVAN
        DK   K IG     + LYIL  +QP         ++C V+     +WH RM HPS + L +L+  L     +   +  C ICPLAKQR+LSFTS N++++
Subjt:  DKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVS---FPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVAN

Query:  AVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQ
          FDL+H DI   + + T++ + YFLTIVDD +RYTWVF+++ KS+ ++++P FF+L++TQ+GK+IK+ RSDNA +L FT FF +KGV HQ+SCV  P+Q
Subjt:  AVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQ

Query:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPP
        NSVVE KHQ++L+ AR+L FQS+VP+ FWG+C++T  +LI+RTPS  L+W  PF +L+  + +Y+ ++VFG LC+AS+L  + S F PRAIPSVF+GYP 
Subjt:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPP

Query:  RVK
         +K
Subjt:  RVK

A0A5D3D1N3 Cysteine-rich RLK (Receptor-like protein kinase) 84.8e-8148.51Show/hide
Query:  DKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVS---FPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVAN
        DK   K IG     + LYIL  +QP         ++C V+     +WH RM HPS + L +L+  L     +   +  C ICPLAKQR+LSFTS N++++
Subjt:  DKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVS---FPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVAN

Query:  AVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQ
          FDL+H DI   + + T++ + YFLTIVDD +RYTWVF+++ KS+ ++++P FF+L++TQ+GK+IK+ RSDNA +L FT FF +KGV HQ+SCV  P+Q
Subjt:  AVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQ

Query:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPP
        NSVVE KHQ++L+ AR+L FQS+VP+ FWG+C++T  +LI+RTPS  L+W  PF +L+  + +Y+ ++VFG LC+AS+L  + S F PRAIPSVF+GYP 
Subjt:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPP

Query:  RVK
         +K
Subjt:  RVK

SwissProt top hitse value%identityAlignment
P04146 Copia protein6.3e-2227.68Show/hide
Query:  SFPIWHNRMRHPSLKHLVALKDILHFNTDS-----TTTLEPCLICPLAKQRRLSF---TSRNNVANAVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSR
        +F +WH R  H S   L+ +K    F+  S       + E C  C   KQ RL F     + ++   +F +VH D+       T     YF+  VD F+ 
Subjt:  SFPIWHNRMRHPSLKHLVALKDILHFNTDS-----TTTLEPCLICPLAKQRRLSF---TSRNNVANAVFDLVHCDI--TYKSPTHTGFRYFLTIVDDFSR

Query:  YTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPEL---SFTDFFHEKGVFHQFSCVGCPEQNSVVEHKHQYLLDIARSLLFQSRVPIRFWGE
        Y   +LI+ KS+  ++   F    +  F   +     DN  E        F  +KG+ +  +    P+ N V E   + + + AR+++  +++   FWGE
Subjt:  YTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPEL---SFTDFFHEKGVFHQFSCVGCPEQNSVVEHKHQYLLDIARSLLFQSRVPIRFWGE

Query:  CVLTMCFLINRTPSPFL--KWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPP
         VLT  +LINR PS  L     TP+   H +     H+RVFG   +   + + +  F  ++  S+F+GY P
Subjt:  CVLTMCFLINRTPSPFL--KWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPP

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-4331.54Show/hide
Query:  KGDFSKSLYILAREQPLGVQLKTPHTVCM---------VSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVANAVF
        K   +K   ++A+    G   +T   +C          +S  +WH RM H S K L  L      +    TT++PC  C   KQ R+SF + +     + 
Subjt:  KGDFSKSLYILAREQPLGVQLKTPHTVCM---------VSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVANAVF

Query:  DLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELS---FTDFFHEKGVFHQFSCVGCPEQ
        DLV+ D+    +  +  G +YF+T +DD SR  WV++++ K     V  +F  LV+ + G+ +K+ RSDN  E +   F ++    G+ H+ +  G P+ 
Subjt:  DLVHCDI--TYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELS---FTDFFHEKGVFHQFSCVGCPEQ

Query:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGY
        N V E  ++ +++  RS+L  +++P  FWGE V T C+LINR+PS  L ++ P      +  +YSH++VFGC  FA      R+    ++IP +F+GY
Subjt:  NSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGY

Q87040 Pro-Pol polyprotein8.3e-0625Show/hide
Query:  TVCMVSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVANAVFDLVHCDITYKSPTHTGFRYFLTIVDDFSRYTWVF
        T+  ++   W   MR   +K L   K  L  N  S  T  P L              R +     FD    D     P   G+ Y L IVD  + +TW++
Subjt:  TVCMVSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVANAVFDLVHCDITYKSPTHTGFRYFLTIVDDFSRYTWVF

Query:  LIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFL
          +  S + T V     L      K I   +       +F ++  E+G+  +FS    P+ +  VE K+  +  +   LL     P + W + +  +   
Subjt:  LIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFL

Query:  INRTPSPFLKWDTPFARLHGRIAN
        +N T SP LK+ TP   L G  +N
Subjt:  INRTPSPFLKWDTPFARLHGRIAN

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-3229.34Show/hide
Query:  WHNRMRHPSLKHLVALKDILHFNTDSTTTLEP------CLICPLAKQRRLSFTSRNNVANAVFDLVHCDITYKSP--THTGFRYFLTIVDDFSRYTWVFL
        WH R+ HP+   L ++      +  S + L P      C  C + K  ++ F+     +    + ++ D+ + SP  +H  +RY++  VD F+RYTW++ 
Subjt:  WHNRMRHPSLKHLVALKDILHFNTDSTTTLEP------CLICPLAKQRRLSFTSRNNVANAVFDLVHCDITYKSP--THTGFRYFLTIVDDFSRYTWVFL

Query:  IRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPE-LSFTDFFHEKGVFHQFSCVGCPEQNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFL
        ++QKS        F  L++ +F   I  F SDN  E ++  ++F + G+ H  S    PE N + E KH+++++   +LL  + +P  +W        +L
Subjt:  IRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPE-LSFTDFFHEKGVFHQFSCVGCPEQNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFL

Query:  INRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGY
        INR P+P L+ ++PF +L G   NY  +RVFGC C+      ++     ++   VFLGY
Subjt:  INRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.5e-3129.34Show/hide
Query:  WHNRMRHPSLKHLVALKDILHFNTDSTTTLEP------CLICPLAKQRRLSFTSRNNVANAVFDLVHCDITYKSP--THTGFRYFLTIVDDFSRYTWVFL
        WH+R+ HPSL  L ++      +  S   L P      C  C + K  ++ F++    ++   + ++ D+ + SP  +   +RY++  VD F+RYTW++ 
Subjt:  WHNRMRHPSLKHLVALKDILHFNTDSTTTLEP------CLICPLAKQRRLSFTSRNNVANAVFDLVHCDITYKSP--THTGFRYFLTIVDDFSRYTWVFL

Query:  IRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPE-LSFTDFFHEKGVFHQFSCVGCPEQNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFL
        ++QKS        F  LV+ +F   I    SDN  E +   D+  + G+ H  S    PE N + E KH++++++  +LL  + VP  +W        +L
Subjt:  IRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPE-LSFTDFFHEKGVFHQFSCVGCPEQNSVVEHKHQYLLDIARSLLFQSRVPIRFWGECVLTMCFL

Query:  INRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGY
        INR P+P L+  +PF +L G+  NY  ++VFGC C+      +R     ++    F+GY
Subjt:  INRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTGTTTCGTTTGGTGGTTCTCATGTGGCAGGATAAGTTGTTGTTGAAGACGATTGGGAAGGGTGATTTTAGCAAAAGCCTCTATATTCTGGCACGGGAACAGCC
CCTTGGTGTGCAGCTTAAAACCCCACACACTGTTTGTATGGTTTCTTTTCCTATCTGGCATAATAGGATGCGTCATCCATCTCTTAAACATTTAGTTGCTTTGAAGGATA
TTTTGCATTTCAATACTGATAGTACTACTACATTGGAACCATGTTTGATTTGTCCTTTGGCGAAACAAAGAAGATTATCATTTACTTCTCGCAATAATGTAGCTAATGCT
GTTTTTGACTTAGTTCATTGTGATATCACTTATAAGTCTCCAACTCATACTGGTTTTCGTTATTTTTTAACCATAGTTGATGATTTCTCCCGTTATACTTGGGTCTTTTT
AATCCGCCAGAAGTCTAATGCTTTAACAGTGGTTCCCCGATTTTTTCGTCTTGTTAAAACTCAGTTTGGCAAAAGTATTAAACAGTTTCGGTCTGATAACGCTCCGGAGT
TGTCTTTCACTGATTTCTTTCATGAGAAAGGCGTTTTTCATCAGTTTTCGTGTGTGGGTTGTCCTGAACAAAACTCTGTTGTTGAGCACAAGCACCAATACTTATTAGAT
ATTGCTAGGTCTCTCTTGTTTCAGTCTCGAGTGCCTATTCGTTTTTGGGGTGAATGTGTCCTCACAATGTGTTTTCTTATTAATCGCACGCCATCTCCTTTTTTGAAGTG
GGACACACCTTTTGCTCGACTACATGGTCGTATTGCTAATTATTCTCATATAAGAGTTTTTGGTTGTCTTTGTTTTGCATCAACATTGACTTCTCATCGTTCTACGTTTC
ATCCTCGGGCCATACCGTCTGTGTTCCTTGGATATCCCCCAAGAGTTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTGTTTCGTTTGGTGGTTCTCATGTGGCAGGATAAGTTGTTGTTGAAGACGATTGGGAAGGGTGATTTTAGCAAAAGCCTCTATATTCTGGCACGGGAACAGCC
CCTTGGTGTGCAGCTTAAAACCCCACACACTGTTTGTATGGTTTCTTTTCCTATCTGGCATAATAGGATGCGTCATCCATCTCTTAAACATTTAGTTGCTTTGAAGGATA
TTTTGCATTTCAATACTGATAGTACTACTACATTGGAACCATGTTTGATTTGTCCTTTGGCGAAACAAAGAAGATTATCATTTACTTCTCGCAATAATGTAGCTAATGCT
GTTTTTGACTTAGTTCATTGTGATATCACTTATAAGTCTCCAACTCATACTGGTTTTCGTTATTTTTTAACCATAGTTGATGATTTCTCCCGTTATACTTGGGTCTTTTT
AATCCGCCAGAAGTCTAATGCTTTAACAGTGGTTCCCCGATTTTTTCGTCTTGTTAAAACTCAGTTTGGCAAAAGTATTAAACAGTTTCGGTCTGATAACGCTCCGGAGT
TGTCTTTCACTGATTTCTTTCATGAGAAAGGCGTTTTTCATCAGTTTTCGTGTGTGGGTTGTCCTGAACAAAACTCTGTTGTTGAGCACAAGCACCAATACTTATTAGAT
ATTGCTAGGTCTCTCTTGTTTCAGTCTCGAGTGCCTATTCGTTTTTGGGGTGAATGTGTCCTCACAATGTGTTTTCTTATTAATCGCACGCCATCTCCTTTTTTGAAGTG
GGACACACCTTTTGCTCGACTACATGGTCGTATTGCTAATTATTCTCATATAAGAGTTTTTGGTTGTCTTTGTTTTGCATCAACATTGACTTCTCATCGTTCTACGTTTC
ATCCTCGGGCCATACCGTCTGTGTTCCTTGGATATCCCCCAAGAGTTAAATGA
Protein sequenceShow/hide protein sequence
MDLFRLVVLMWQDKLLLKTIGKGDFSKSLYILAREQPLGVQLKTPHTVCMVSFPIWHNRMRHPSLKHLVALKDILHFNTDSTTTLEPCLICPLAKQRRLSFTSRNNVANA
VFDLVHCDITYKSPTHTGFRYFLTIVDDFSRYTWVFLIRQKSNALTVVPRFFRLVKTQFGKSIKQFRSDNAPELSFTDFFHEKGVFHQFSCVGCPEQNSVVEHKHQYLLD
IARSLLFQSRVPIRFWGECVLTMCFLINRTPSPFLKWDTPFARLHGRIANYSHIRVFGCLCFASTLTSHRSTFHPRAIPSVFLGYPPRVK