CuGenDBv2

Gene ID	Moc08g11210
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein ROOT INITIATION DEFECTIVE 3-like
Genome location	chr8:8299649..8301572
RNA-Seq Expression	Moc08g11210
Synteny	Moc08g11210
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process) GO:0005656 - nuclear pre-replicative complex (cellular component) GO:0097344 - Rix1 complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7037821.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.5e-42

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Query:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR
        +GPVNN+LIVRQQLLP SQ+N TSQGSLRKHRSLLPP+LAKF NSKD+DEDTGVIIG SG   E MG SP++ HVM+NQI ELQQQGSAATG+ELERLKR
Subjt:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR

Query:  DYGKSMQMLQHWRKI
        DYGKSMQM Q WRK+
Subjt:  DYGKSMQMLQHWRKI

XP_022151059.1 protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia]

5.9e-44

74.8

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Query:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSGEFMG-SSPLTCHVMENQIAELQQQGSAATGIELERLKRDY
        +GPVNNI+IVRQ+++PK  INS+SQGSLRKHRSL+PP LAKFENSKDEDEDTG++IG+SGEFMG SSPLTC VMENQIA+LQ+QG AATG+ELER+KRDY
Subjt:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSGEFMG-SSPLTCHVMENQIAELQQQGSAATGIELERLKRDY

Query:  GKSMQMLQHWRKIIAIRCQFCLS
        G+SMQMLQ WRK+     +FC++
Subjt:  GKSMQMLQHWRKIIAIRCQFCLS

XP_022941447.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata]

1.1e-42

75.2

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Query:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR
        +GPVNN+LIVRQQLLP SQ+N TSQGSLRKHRSLLPP+LAKF NSKD+DEDTGVIIG SG   E MG SP++ HVM+NQI ELQQQGSAATG+ELERLKR
Subjt:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR

Query:  DYGKSMQMLQHWRKIIAIRCQFCLS
        DYGKSMQM Q WRK+     Q+C++
Subjt:  DYGKSMQMLQHWRKIIAIRCQFCLS

XP_023521513.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo]

1.1e-42

75.2

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Query:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR
        +GPVNN+LIVRQQLLP SQ+N TSQGSLRKHRSLLPP+LAKF NSKD+DEDTGVIIG SG   E MG SP++ HVM+NQI ELQQQGSAATG+ELERLKR
Subjt:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR

Query:  DYGKSMQMLQHWRKIIAIRCQFCLS
        DYGKSMQM Q WRK+     Q+C++
Subjt:  DYGKSMQMLQHWRKIIAIRCQFCLS

XP_023536626.1 protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Cucurbita pepo subsp. pepo]

1.9e-42

72.22

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Query:  MLKAHLVVIMDCTFSVHYQIRGPV--NNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMEN
        ML AH  V  DC FS H  I+  +  NNILIVRQQL PK Q  STSQGSLRKHRSLLPP+LA+FENSKDEDEDTGVIIGLSG   E MG  PL+ H+M+N
Subjt:  MLKAHLVVIMDCTFSVHYQIRGPV--NNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMEN

Query:  QIAELQQQGSAATGIELERLKRDYGKSMQMLQHWRKIIAIRCQF
        QI ELQQQGSAATG+ELERL+RDYGKSMQMLQ WRK+ A   QF
Subjt:  QIAELQQQGSAATGIELERLKRDYGKSMQMLQHWRKIIAIRCQF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZT0 WD_REPEATS_REGION domain-containing protein

2.0e-37

72.8

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Query:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR
        +GPVNNIL+V+QQ LPKSQ  STSQGSLRKHR LLPP+LAKFENSKDEDE TGVII  SG   E  G S L+ HVM++QI ELQQQGSAATG+ELERLK 
Subjt:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR

Query:  DYGKSMQMLQHWRKIIAIRCQFCLS
        DYGKS QMLQHWRK+     QFC++
Subjt:  DYGKSMQMLQHWRKIIAIRCQFCLS

A0A1S3BU36 protein ROOT INITIATION DEFECTIVE 3

1.3e-36

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Query:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR
        +GPVNNIL+V+QQ LPKSQ  STSQGSLRKHR +LPP+LAKFENSKDEDE TGVII  SG   E M  S L+ HVM+NQI ELQQQGSAAT +ELERLK 
Subjt:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR

Query:  DYGKSMQMLQHWRKIIAIRCQFCLS
        DYGKS QMLQHWRK+     QFC++
Subjt:  DYGKSMQMLQHWRKIIAIRCQFCLS

A0A6J1DDG0 protein ROOT INITIATION DEFECTIVE 3-like

2.8e-44

74.8

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Query:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSGEFMG-SSPLTCHVMENQIAELQQQGSAATGIELERLKRDY
        +GPVNNI+IVRQ+++PK  INS+SQGSLRKHRSL+PP LAKFENSKDEDEDTG++IG+SGEFMG SSPLTC VMENQIA+LQ+QG AATG+ELER+KRDY
Subjt:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSGEFMG-SSPLTCHVMENQIAELQQQGSAATGIELERLKRDY

Query:  GKSMQMLQHWRKIIAIRCQFCLS
        G+SMQMLQ WRK+     +FC++
Subjt:  GKSMQMLQHWRKIIAIRCQFCLS

A0A6J1FMG7 protein ROOT INITIATION DEFECTIVE 3

5.3e-43

75.2

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Query:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR
        +GPVNN+LIVRQQLLP SQ+N TSQGSLRKHRSLLPP+LAKF NSKD+DEDTGVIIG SG   E MG SP++ HVM+NQI ELQQQGSAATG+ELERLKR
Subjt:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR

Query:  DYGKSMQMLQHWRKIIAIRCQFCLS
        DYGKSMQM Q WRK+     Q+C++
Subjt:  DYGKSMQMLQHWRKIIAIRCQFCLS

A0A6J1IYT8 protein ROOT INITIATION DEFECTIVE 3

6.5e-41

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Query:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR
        +GPVNN+LIV+ QLLP SQ+N TSQGSLRKHRSLLPP+LAKF NSKD+DEDTGVIIG SG   E MG SP++ HVM++QI ELQQQGSAATG+ELERLKR
Subjt:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLSG---EFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR

Query:  DYGKSMQMLQHWRKIIAIRCQFCLS
        +YGKSMQM Q WRK+     Q+C++
Subjt:  DYGKSMQMLQHWRKIIAIRCQFCLS

SwissProt top hits

e value

%identity

Alignment

Q9M3B4 Protein ROOT INITIATION DEFECTIVE 3

1.1e-13

40.35

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Query:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIG---LSGEFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR
        +GPVNNI IVR+ ++  S   + +Q S +   +L+PP L K+E   ++  D  V +     S   + SS L+  +++ Q+ ELQQQGSAAT +E+ERLK 
Subjt:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIG---LSGEFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR

Query:  DYGKSMQMLQHWRK
        +Y +S+QM + W+K
Subjt:  DYGKSMQMLQHWRK

Arabidopsis top hits

e value

%identity

Alignment

AT3G49180.1 Transducin/WD40 repeat-like superfamily protein

7.9e-15

40.35

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Query:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIG---LSGEFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR
        +GPVNNI IVR+ ++  S   + +Q S +   +L+PP L K+E   ++  D  V +     S   + SS L+  +++ Q+ ELQQQGSAAT +E+ERLK 
Subjt:  RGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIG---LSGEFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKR

Query:  DYGKSMQMLQHWRK
        +Y +S+QM + W+K
Subjt:  DYGKSMQMLQHWRK

Sequences

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CDS sequence

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ATGCAATTGCTCTGGATCCTGGTGAACATGTATTCTATGGTGGTGGTAGGGATGGAAAGATATACACTGCTGCACTCAATGCTAAAAGCTCATCTAGTAGTGATT
ATGGATTGCACATTCTCGGTTCATTATCAAATCAGAGGTCCCGTAAATAATATACTTATCGTTAGACAACAGCTCCTCCCTAAATCGCAGATAAATTCTACTTCC
CAAGGTTCCTTGAGAAAGCATCGTTCGCTATTACCTCCCTCCCTTGCAAAATTTGAAAATTCGAAGGACGAGGATGAAGACACTGGTGTTATCATTGGTCTATCA
GGAGAATTTATGGGTTCTTCCCCCCTTACTTGTCATGTGATGGAGAACCAAATCGCAGAACTTCAGCAACAGGGTTCTGCTGCCACGGGAATAGAGTTGGAAAGA
CTAAAGCGCGATTATGGAAAATCCATGCAAATGCTACAGCACTGGAGAAAAATCATTGCTATTAGATGCCAATTCTGCCTGAGCATTGCTATTATATGTAGACCC
TGTCACCAAGTCAGTAGAGTATCAACAAACAGTATTCGATAG

mRNA sequence

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Protein sequence

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MQLLWILVNMYSMVVVGMERYTLLHSMLKAHLVVIMDCTFSVHYQIRGPVNNILIVRQQLLPKSQINSTSQGSLRKHRSLLPPSLAKFENSKDEDEDTGVIIGLS
GEFMGSSPLTCHVMENQIAELQQQGSAATGIELERLKRDYGKSMQMLQHWRKIIAIRCQFCLSIAIICRPCHQVSRVSTNSIR

Moc08g11210 (gene) of Bitter gourd (OHB3-1) v2 genome