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Moc08g12100 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g12100
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr8:8953057..8954299
RNA-Seq ExpressionMoc08g12100
SyntenyMoc08g12100
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ04453.1 myb domain protein 112 [Actinidia rufa]3.8e-1163.27Show/hide
Query:  QTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY
        + +VG L PTWEGP++V  + RPGTY L DL G  L+HPWNAEHLK+YY
Subjt:  QTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY

XP_022144032.1 uncharacterized protein LOC111013824 [Momordica charantia]1.3e-1981.13Show/hide
Query:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP
        +K+Q+HVG LDP+WEGPFEVKGI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Subjt:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]6.4e-1176.19Show/hide
Query:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHP
        RKVQ HV  L+P+WEGPFEVKGIVRPGTY+LADL+G +L+HP
Subjt:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHP

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]9.9e-1261.54Show/hide
Query:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY
        +KV  HVGAL+P WEGP+ V  I+RP  Y+L+DL G  L HPWNAEHL+ YY
Subjt:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]9.3e-1880.77Show/hide
Query:  KVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP
        K+Q+HVG LDP+WE  FEVKGIVRPGTY+LADL+  VLAHPWNAEHLKRYYP
Subjt:  KVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP

TrEMBL top hitse value%identityAlignment
A0A6J1CSJ1 Ribonuclease H6.3e-2081.13Show/hide
Query:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP
        +K+Q+HVG LDP+WEGPFEVKGI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Subjt:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP

A0A6J1DWM2 Ribonuclease H4.8e-1261.54Show/hide
Query:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY
        +KV  HVGAL+P WEGP+ V  I+RP  Y+L+DL G  L HPWNAEHL+ YY
Subjt:  RKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY

A0A6J1DXL9 uncharacterized protein LOC1110254484.5e-1880.77Show/hide
Query:  KVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP
        K+Q+HVG LDP+WE  FEVKGIVRPGTY+LADL+  VLAHPWNAEHLKRYYP
Subjt:  KVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP

A0A7J0FRB1 Uncharacterized protein3.1e-1161.22Show/hide
Query:  QTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY
        + + G L PTWEGP++V  + RPGTY L DL+G  L+HPWNAEHLK+YY
Subjt:  QTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY

A0A7J0G0K9 Ribonuclease H1.8e-1163.27Show/hide
Query:  QTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY
        + +VG L PTWEGP++V  + RPGTY L DL G  L+HPWNAEHLK+YY
Subjt:  QTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATCGATGCTCTAGAGTCCTCATGGATGGACCCGATTGTGGACTTTATTGGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAGGAAGGTCCAAACCCATGT
GGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGA
ACGCGGAACACTTGAAGCGTTATTATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATCGATGCTCTAGAGTCCTCATGGATGGACCCGATTGTGGACTTTATTGGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAGGAAGGTCCAAACCCATGT
GGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGA
ACGCGGAACACTTGAAGCGTTATTATCCTTGA
Protein sequenceShow/hide protein sequence
MEIDALESSWMDPIVDFIGGNSPQDPKERRRKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYP