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Moc08g13080 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g13080
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionlight-regulated protein-like
Genome locationchr8:9956928..9958668
RNA-Seq ExpressionMoc08g13080
SyntenyMoc08g13080
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066931.1 light-regulated protein isoform X2 [Cucumis melo var. makuwa]2.0e-3471.11Show/hide
Query:  AVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPLENAPSNAVA
        AVL+I V P LLP  T SN+S   FP  +FGS SSRR AIKAT++V YDTSVVDYSSA+SVFPAEACE IGGEA CWA++FPEVRLQP  L N  + AVA
Subjt:  AVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPLENAPSNAVA

Query:  -LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA
         LE+IDREYLDY +DS TVF GEACDDLGG+FC A
Subjt:  -LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA

XP_008450019.2 PREDICTED: light-regulated protein isoform X2 [Cucumis melo]7.5e-3468.79Show/hide
Query:  AVAYKLAVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPLENA
        A A + AVL+I V P LLP  T SN+S   FP  +FGS SSR  AIKAT++V YDTSVVDYSSA+SVFPAEACE IGGEA CWA++FPEVRLQP  L N 
Subjt:  AVAYKLAVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPLENA

Query:  PSNAVA-LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA
         + AVA LE+IDREYLDY +DS TVF GEACDDLGG+FC A
Subjt:  PSNAVA-LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA

XP_016900821.1 PREDICTED: light-regulated protein isoform X3 [Cucumis melo]7.5e-3466.67Show/hide
Query:  QAQAVAYKLAVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPL
        +A +   + AVL+I V P LLP  T SN+S   FP  +FGS SSR  AIKAT++V YDTSVVDYSSA+SVFPAEACE IGGEA CWA++FPEVRLQP  L
Subjt:  QAQAVAYKLAVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPL

Query:  ENAPSNAVA-LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA
         N  + AVA LE+IDREYLDY +DS TVF GEACDDLGG+FC A
Subjt:  ENAPSNAVA-LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA

XP_022148181.1 light-regulated protein-like [Momordica charantia]9.0e-64100Show/hide
Query:  AVLTIPVLPLLLPTPSNNSFPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDIDR
        AVLTIPVLPLLLPTPSNNSFPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDIDR
Subjt:  AVLTIPVLPLLLPTPSNNSFPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDIDR

Query:  EYLDYSDSSTVFLGEACDDLGGDFCGA
        EYLDYSDSSTVFLGEACDDLGGDFCGA
Subjt:  EYLDYSDSSTVFLGEACDDLGGDFCGA

XP_038893926.1 light-regulated protein, chloroplastic-like [Benincasa hispida]1.1e-3770.31Show/hide
Query:  AVLTIPVLPLLLPTPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALED
        AVL+I V PLL  T SNN+   FPL SF S  SRR AIKAT++V YD S+VDYSSA+SVFPAEACE IGGEACWA++FPEVR+QP      P  AVALE+
Subjt:  AVLTIPVLPLLLPTPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALED

Query:  IDREYLDYSDSSTVFLGEACDDLGGDFC
        IDREYLDY+DS TVF GEACDDLGG+FC
Subjt:  IDREYLDYSDSSTVFLGEACDDLGGDFC

TrEMBL top hitse value%identityAlignment
A0A0A0L8G9 Uncharacterized protein5.2e-3366.67Show/hide
Query:  AVLTIPVLPLLLPTPSNNS-----FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEAC-WAHIFPEVRLQPQPLENAPSNAVA
        AVL+I V P LLP+ + +S     FPL +F S SSRR +IKAT++V YDTSVVDYSSA+SVFPAEACE IGGEAC W ++FPEVRLQ   L N   N VA
Subjt:  AVLTIPVLPLLLPTPSNNS-----FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEAC-WAHIFPEVRLQPQPLENAPSNAVA

Query:  -LEDIDREYLDYSDSSTVFLGEACDDLGGDFC
          E+IDREYLDY+DS TVF GEACDDLGG+FC
Subjt:  -LEDIDREYLDYSDSSTVFLGEACDDLGGDFC

A0A1S3BND3 light-regulated protein isoform X23.6e-3468.79Show/hide
Query:  AVAYKLAVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPLENA
        A A + AVL+I V P LLP  T SN+S   FP  +FGS SSR  AIKAT++V YDTSVVDYSSA+SVFPAEACE IGGEA CWA++FPEVRLQP  L N 
Subjt:  AVAYKLAVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPLENA

Query:  PSNAVA-LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA
         + AVA LE+IDREYLDY +DS TVF GEACDDLGG+FC A
Subjt:  PSNAVA-LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA

A0A1S4DXW1 light-regulated protein isoform X33.6e-3466.67Show/hide
Query:  QAQAVAYKLAVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPL
        +A +   + AVL+I V P LLP  T SN+S   FP  +FGS SSR  AIKAT++V YDTSVVDYSSA+SVFPAEACE IGGEA CWA++FPEVRLQP  L
Subjt:  QAQAVAYKLAVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPL

Query:  ENAPSNAVA-LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA
         N  + AVA LE+IDREYLDY +DS TVF GEACDDLGG+FC A
Subjt:  ENAPSNAVA-LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA

A0A5A7VMP8 Light-regulated protein isoform X29.5e-3571.11Show/hide
Query:  AVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPLENAPSNAVA
        AVL+I V P LLP  T SN+S   FP  +FGS SSRR AIKAT++V YDTSVVDYSSA+SVFPAEACE IGGEA CWA++FPEVRLQP  L N  + AVA
Subjt:  AVLTIPVLPLLLP--TPSNNS---FPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEA-CWAHIFPEVRLQPQPLENAPSNAVA

Query:  -LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA
         LE+IDREYLDY +DS TVF GEACDDLGG+FC A
Subjt:  -LEDIDREYLDY-SDSSTVFLGEACDDLGGDFCGA

A0A6J1D4L7 light-regulated protein-like4.4e-64100Show/hide
Query:  AVLTIPVLPLLLPTPSNNSFPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDIDR
        AVLTIPVLPLLLPTPSNNSFPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDIDR
Subjt:  AVLTIPVLPLLLPTPSNNSFPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDIDR

Query:  EYLDYSDSSTVFLGEACDDLGGDFCGA
        EYLDYSDSSTVFLGEACDDLGGDFCGA
Subjt:  EYLDYSDSSTVFLGEACDDLGGDFCGA

SwissProt top hitse value%identityAlignment
Q03200 Light-regulated protein, chloroplastic1.6e-1851Show/hide
Query:  RRPAIK---ATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDIDREYLDYSDSSTVFLGEACDDLGGDFCGA
        RR A++   A + VA + + VDYSS +SVFP EAC++IGGEAC   ++PE +L       A S A A E++DR+YL Y + +TVF  EACDDLGG+FC A
Subjt:  RRPAIK---ATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDIDREYLDYSDSSTVFLGEACDDLGGDFCGA

Q96500 Light-regulated protein 1, chloroplastic3.7e-2046.03Show/hide
Query:  LLLPTPSNNSFPLNSF----GSLSSRRPAIK-----ATSTVAYDTSVVDYSSAV-SVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDID
        +LLP PS+ S P  +F     + +SR  +++     ++S++  D + VDY+S++ SVFPAEACE+I G AC A I+PEV+L  +P+    S  VA E +D
Subjt:  LLLPTPSNNSFPLNSF----GSLSSRRPAIK-----ATSTVAYDTSVVDYSSAV-SVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDID

Query:  REYLDYSDSSTVFLGEACDDLGGDFC
        REY +Y+   TVF  EACDDLGG+FC
Subjt:  REYLDYSDSSTVFLGEACDDLGGDFC

Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like2.7e-2146.03Show/hide
Query:  LLLPTPSNNSFPLNSF----GSLSSRRPAIK-----ATSTVAYDTSVVDYSSAV-SVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDID
        +LLP PS+ S P  +F     + +SR  +++     ++S++  D + VDY+S++ SVFPAEACE+I G AC A I+PEV+L  +P+    S  VA E +D
Subjt:  LLLPTPSNNSFPLNSF----GSLSSRRPAIK-----ATSTVAYDTSVVDYSSAV-SVFPAEACEIIGGEACWAHIFPEVRLQPQPLENAPSNAVALEDID

Query:  REYLDYSDSSTVFLGEACDDLGGDFC
        REY +Y+   TVF  EACDDLGG+FC
Subjt:  REYLDYSDSSTVFLGEACDDLGGDFC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAAGGAAGGAAAAGCAAAGGAATCTTATCTGGAGGAGCAGGCTCAGGCTGTTGCATATAAATTGGCTGTTCTTACCATTCCTGTCCTTCCCCTTCTCCTCCCAAC
ACCTTCCAACAACTCTTTTCCCTTGAACTCTTTCGGCTCTCTCTCGTCACGTCGCCCCGCAATCAAAGCAACCTCCACGGTCGCCTACGACACCTCGGTGGTTGATTATA
GCTCCGCTGTCTCAGTGTTTCCTGCTGAAGCATGTGAGATAATTGGTGGAGAAGCGTGTTGGGCTCATATTTTTCCAGAAGTGAGGCTTCAGCCTCAGCCTCTGGAAAAC
GCCCCATCAAACGCCGTCGCTTTGGAAGATATTGATAGAGAATATCTTGATTACTCCGATTCTAGCACCGTTTTCCTAGGAGAGGCTTGTGATGATCTTGGTGGAGACTT
CTGTGGAGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAAGGAAGGAAAAGCAAAGGAATCTTATCTGGAGGAGCAGGCTCAGGCTGTTGCATATAAATTGGCTGTTCTTACCATTCCTGTCCTTCCCCTTCTCCTCCCAAC
ACCTTCCAACAACTCTTTTCCCTTGAACTCTTTCGGCTCTCTCTCGTCACGTCGCCCCGCAATCAAAGCAACCTCCACGGTCGCCTACGACACCTCGGTGGTTGATTATA
GCTCCGCTGTCTCAGTGTTTCCTGCTGAAGCATGTGAGATAATTGGTGGAGAAGCGTGTTGGGCTCATATTTTTCCAGAAGTGAGGCTTCAGCCTCAGCCTCTGGAAAAC
GCCCCATCAAACGCCGTCGCTTTGGAAGATATTGATAGAGAATATCTTGATTACTCCGATTCTAGCACCGTTTTCCTAGGAGAGGCTTGTGATGATCTTGGTGGAGACTT
CTGTGGAGCATAG
Protein sequenceShow/hide protein sequence
MSKEGKAKESYLEEQAQAVAYKLAVLTIPVLPLLLPTPSNNSFPLNSFGSLSSRRPAIKATSTVAYDTSVVDYSSAVSVFPAEACEIIGGEACWAHIFPEVRLQPQPLEN
APSNAVALEDIDREYLDYSDSSTVFLGEACDDLGGDFCGA