CuGenDBv2

Gene ID	Moc08g14310
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr8:10832573..10833496
RNA-Seq Expression	Moc08g14310
Synteny	Moc08g14310
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0044260 - cellular macromolecule metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0043826.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.1e-68

46.52

Show/hide

Query:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS
        MD SK LEENLD+F KI ++L N GE ++DENQAVILLNSLP+ Y+EVK+AIKYGRD+L + IVLD+ +++ LE K  +KD E L ++ +  K  +K   
Subjt:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS

Query:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH
        ++S +S SKG +++     C  CHK+GH K +CP+ K       R  + ++AN+ +                GYESAEVL+V   +  D WIMDSGCTFH
Subjt:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH

Query:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV
        MTP + +    ++ DGG+V++G++  C +KG  S+++   +G   IL++V +VP LK+NLISLG LD+SGC   SE GV+ V K S++KL G L++GLYV
Subjt:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV

Query:  LNGNTVVGELNVASNK
        L G TV G   +AS K
Subjt:  LNGNTVVGELNVASNK

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

4.3e-68

46.52

Show/hide

Query:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS
        MD SK LEENLD+F KI ++L N GE ++DENQAVILLNSLP+ Y+EVK+AIKYG D+L + IVLD+ +++ LE K  +KD E L ++ +  K  +K   
Subjt:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS

Query:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH
        ++S +S SKG +++     C  CHK+GH K +CP+ K       R  + ++AN+ +                GYESAEVL+V   +  D WIMDSGCTFH
Subjt:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH

Query:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV
        MTP + +    ++ DGG+V++G++  C +KG  S+++   +G   IL++VR+VP LK+NLISLG LD+SGC   SE GV+ V K S++KL G L++GLYV
Subjt:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV

Query:  LNGNTVVGELNVASNK
        L G TV G   +AS K
Subjt:  LNGNTVVGELNVASNK

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.7e-69

46.84

Show/hide

Query:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS
        MD SK LEENLD+F KI ++L N GE ++DENQAVILLNSLP+ Y+EVK+AIKYGRD+L + IVLD+ +++ LE K  +KD E L ++ +  K  +K   
Subjt:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS

Query:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH
        ++S +S SKG +++     C  CHK+GH K +CP+ K       R  + ++AN+ +                GYESAEVL+V   +  D WIMDSGCTFH
Subjt:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH

Query:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV
        MTP + +    ++ DGG+V++G++  C +KG  S+++   +G   IL++VR+VP LK+NLISLG LD+SGC   SE GV+ V K S++KL G L++GLYV
Subjt:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV

Query:  LNGNTVVGELNVASNK
        L G TV G   +AS K
Subjt:  LNGNTVVGELNVASNK

KAA0067607.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]

2.1e-67

47.52

Show/hide

Query:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS
        MD SK LEENLD+F KI ++L+N GE ++DENQAVILLNSLP+ Y+EVK+AIKYGRD+L + IVLD+ +++ LE K  +KD E L ++ +  K  +K   
Subjt:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS

Query:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVR---SENKAKANLLEGYESAEVLVVGKLNGSDEWIMDSGCTFHMTPQKHYFVELEE
        ++S++S SKG +++     C  CH KGH K +CP+ K +         ++    A + +GYESAEVL+V   +  D WIMDSGCTFHMTP + +    ++
Subjt:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVR---SENKAKANLLEGYESAEVLVVGKLNGSDEWIMDSGCTFHMTPQKHYFVELEE

Query:  FDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYVLNGNTVVGELNVA
         DGG+V++G++  C +K   S+++   +    IL++VR+VP LK+NLISLG LD+SGC   SE GV+ V K S++KL G L++GLYVL G TV G   +A
Subjt:  FDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYVLNGNTVVGELNVA

Query:  SNK
        S K
Subjt:  SNK

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.7e-69

46.84

Show/hide

Query:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS
        MD SK LEENLD+F KI ++L N GE ++DENQAVILLNSLP+ Y+EVK+AIKYGRD+L + IVLD+ +++ LE K  +KD E L ++ +  K  +K   
Subjt:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS

Query:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH
        ++S +S SKG +++     C  CHK+GH K +CP+ K       R  + ++AN+ +                GYESAEVL+V   +  D WIMDSGCTFH
Subjt:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH

Query:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV
        MTP + +    ++ DGG+V++G++  C +KG  S+++   +G   IL++VR+VP LK+NLISLG LD+SGC   SE GV+ V K S++KL G L++GLYV
Subjt:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV

Query:  LNGNTVVGELNVASNK
        L G TV G   +AS K
Subjt:  LNGNTVVGELNVASNK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TP18 Putative gag-pol polyprotein

5.4e-69

46.52

Show/hide

Query:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS
        MD SK LEENLD+F KI ++L N GE ++DENQAVILLNSLP+ Y+EVK+AIKYGRD+L + IVLD+ +++ LE K  +KD E L ++ +  K  +K   
Subjt:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS

Query:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH
        ++S +S SKG +++     C  CHK+GH K +CP+ K       R  + ++AN+ +                GYESAEVL+V   +  D WIMDSGCTFH
Subjt:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH

Query:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV
        MTP + +    ++ DGG+V++G++  C +KG  S+++   +G   IL++V +VP LK+NLISLG LD+SGC   SE GV+ V K S++KL G L++GLYV
Subjt:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV

Query:  LNGNTVVGELNVASNK
        L G TV G   +AS K
Subjt:  LNGNTVVGELNVASNK

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

2.1e-68

46.52

Show/hide

Query:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS
        MD SK LEENLD+F KI ++L N GE ++DENQAVILLNSLP+ Y+EVK+AIKYG D+L + IVLD+ +++ LE K  +KD E L ++ +  K  +K   
Subjt:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS

Query:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH
        ++S +S SKG +++     C  CHK+GH K +CP+ K       R  + ++AN+ +                GYESAEVL+V   +  D WIMDSGCTFH
Subjt:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH

Query:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV
        MTP + +    ++ DGG+V++G++  C +KG  S+++   +G   IL++VR+VP LK+NLISLG LD+SGC   SE GV+ V K S++KL G L++GLYV
Subjt:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV

Query:  LNGNTVVGELNVASNK
        L G TV G   +AS K
Subjt:  LNGNTVVGELNVASNK

A0A5A7UB25 Putative gag-pol polyprotein

8.4e-70

46.84

Show/hide

Query:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS
        MD SK LEENLD+F KI ++L N GE ++DENQAVILLNSLP+ Y+EVK+AIKYGRD+L + IVLD+ +++ LE K  +KD E L ++ +  K  +K   
Subjt:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS

Query:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH
        ++S +S SKG +++     C  CHK+GH K +CP+ K       R  + ++AN+ +                GYESAEVL+V   +  D WIMDSGCTFH
Subjt:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH

Query:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV
        MTP + +    ++ DGG+V++G++  C +KG  S+++   +G   IL++VR+VP LK+NLISLG LD+SGC   SE GV+ V K S++KL G L++GLYV
Subjt:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV

Query:  LNGNTVVGELNVASNK
        L G TV G   +AS K
Subjt:  LNGNTVVGELNVASNK

A0A5A7VKC2 Retrotransposon protein, putative, Ty1-copia subclass

1.0e-67

47.52

Show/hide

Query:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS
        MD SK LEENLD+F KI ++L+N GE ++DENQAVILLNSLP+ Y+EVK+AIKYGRD+L + IVLD+ +++ LE K  +KD E L ++ +  K  +K   
Subjt:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS

Query:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVR---SENKAKANLLEGYESAEVLVVGKLNGSDEWIMDSGCTFHMTPQKHYFVELEE
        ++S++S SKG +++     C  CH KGH K +CP+ K +         ++    A + +GYESAEVL+V   +  D WIMDSGCTFHMTP + +    ++
Subjt:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVR---SENKAKANLLEGYESAEVLVVGKLNGSDEWIMDSGCTFHMTPQKHYFVELEE

Query:  FDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYVLNGNTVVGELNVA
         DGG+V++G++  C +K   S+++   +    IL++VR+VP LK+NLISLG LD+SGC   SE GV+ V K S++KL G L++GLYVL G TV G   +A
Subjt:  FDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYVLNGNTVVGELNVA

Query:  SNK
        S K
Subjt:  SNK

A0A5D3DNU1 Putative gag-pol polyprotein

8.4e-70

46.84

Show/hide

Query:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS
        MD SK LEENLD+F KI ++L N GE ++DENQAVILLNSLP+ Y+EVK+AIKYGRD+L + IVLD+ +++ LE K  +KD E L ++ +  K  +K   
Subjt:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS

Query:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH
        ++S +S SKG +++     C  CHK+GH K +CP+ K       R  + ++AN+ +                GYESAEVL+V   +  D WIMDSGCTFH
Subjt:  KQSNQSFSKGNTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLE----------------GYESAEVLVVGKLNGSDEWIMDSGCTFH

Query:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV
        MTP + +    ++ DGG+V++G++  C +KG  S+++   +G   IL++VR+VP LK+NLISLG LD+SGC   SE GV+ V K S++KL G L++GLYV
Subjt:  MTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYV

Query:  LNGNTVVGELNVASNK
        L G TV G   +AS K
Subjt:  LNGNTVVGELNVASNK

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.5e-27

28.85

Show/hide

Query:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS
        M        +L+ FN +  +L N G  + +E++A++LLNSLP  Y  + + I +G+  + L  V  +    E   K  +   +AL ++ +     Y+ SS
Subjt:  MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSS

Query:  KQSNQSFSKGNTKEKEK---LTCNYCHKKGHIKYDCP-ILKRKGKLPVRSENKAKANLLEGYESAEVLVVGK-----LNGSD-EWIMDSGCTFHMTPQKH
            +S ++G +K + K     C  C++ GH K DCP   K KG+   +  +   A +++  ++  + +  +     L+G + EW++D+  + H TP + 
Subjt:  KQSNQSFSKGNTKEKEK---LTCNYCHKKGHIKYDCP-ILKRKGKLPVRSENKAKANLLEGYESAEVLVVGK-----LNGSD-EWIMDSGCTFHMTPQKH

Query:  YFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSG--CVYTSEKGVLSVYKDSMLKLTGILKNGLYVLNGN
         F      D G V MGN    +I GI  I ++ + G  ++L DVR VP L+ NLIS   LD+ G    + ++K  L+  K S++   G+ +  LY  N  
Subjt:  YFVELEEFDGGQVIMGNDQQCQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSG--CVYTSEKGVLSVYKDSMLKLTGILKNGLYVLNGN

Query:  TVVGELNVASNK
           GELN A ++
Subjt:  TVVGELNVASNK

Arabidopsis top hits

e value

%identity

Alignment

AT3G21000.1 Gag-Pol-related retrotransposon family protein

6.9e-08

25.71

Show/hide

Query:  KEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKAN-LLEGYESAEVLVVG-KLNGSDEWIMDSGCTFHMTPQKHYFVELEEFDGGQVIMGNDQQ
        K K +  C  C+K  H + DC       K  + ++ + K + ++  Y    V  +G K    D WI+      +MTP   YF  L+      V   +   
Subjt:  KEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKAN-LLEGYESAEVLVVG-KLNGSDEWIMDSGCTFHMTPQKHYFVELEEFDGGQVIMGNDQQ

Query:  CQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTL
          ++G   +++R+  G    + +V FVPGL +N++S G +
Subjt:  CQIKGICSIRLRLDNGPNIILSDVRFVPGLKQNLISLGTL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTCATCTAAGGGACTGGAAGAAAATCTTGACGATTTTAACAAGATTTGTATGGAATTGACAAATACTGGGGAGACACTCACCGATGAAAATCAAGCTGTTATACT
TTTGAATTCATTACCTGACAAGTACAAAGAGGTTAAATCTGCCATTAAATATGGGAGAGATGCATTAATTTTGGACATTGTTCTTGATTCCTCAAGATCCAAAGAACTTG
AATTCAAATCCGGAAAGAAAGACACTGAAGCTTTATTCTCTAAAACTAAACAGTTCAAGAATCGCTATAAGCATTCTAGTAAACAGTCGAATCAGTCTTTTAGCAAAGGA
AATACAAAAGAAAAGGAAAAACTTACCTGTAACTATTGCCATAAAAAAGGACATATTAAATATGATTGCCCAATTTTAAAAAGAAAAGGAAAGCTGCCAGTAAGAAGTGA
AAATAAAGCCAAAGCAAATTTATTAGAAGGCTATGAGTCCGCTGAGGTTCTTGTGGTGGGAAAATTGAATGGTTCAGATGAATGGATAATGGATTCAGGTTGCACCTTTC
ACATGACCCCACAAAAACATTATTTTGTTGAATTAGAAGAGTTTGATGGTGGACAAGTGATAATGGGCAACGATCAGCAATGTCAGATTAAAGGCATATGTTCAATCAGG
TTAAGGTTGGATAATGGGCCTAATATAATACTATCTGATGTGAGATTTGTACCTGGGTTAAAACAAAATTTAATCTCCCTTGGTACCTTGGATAAGTCAGGTTGTGTATA
TACTTCAGAAAAGGGAGTCTTATCTGTTTATAAAGACTCTATGCTAAAGCTAACAGGTATTTTAAAAAATGGACTCTATGTTCTAAATGGCAATACCGTTGTGGGAGAAC
TAAATGTGGCCAGCAATAAAAGTTTGAAATTAACTAAGCAATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDSSKGLEENLDDFNKICMELTNTGETLTDENQAVILLNSLPDKYKEVKSAIKYGRDALILDIVLDSSRSKELEFKSGKKDTEALFSKTKQFKNRYKHSSKQSNQSFSKG
NTKEKEKLTCNYCHKKGHIKYDCPILKRKGKLPVRSENKAKANLLEGYESAEVLVVGKLNGSDEWIMDSGCTFHMTPQKHYFVELEEFDGGQVIMGNDQQCQIKGICSIR
LRLDNGPNIILSDVRFVPGLKQNLISLGTLDKSGCVYTSEKGVLSVYKDSMLKLTGILKNGLYVLNGNTVVGELNVASNKSLKLTKQ

Moc08g14310 (gene) of Bitter gourd (OHB3-1) v2 genome