| GenBank top hits | e value | %identity | Alignment |
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| KAA0043826.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 3.2e-54 | 63.58 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP K ++ GGSRYF+++IDDFSRK+W+Y LK KDE F KF EWK VENQ GR++K LRTDNGLEF++ KF Q C + GI RH V TPQQNGL ERFN
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
RTI+E+ RC+L+NA+LP FWGEA TA YLINR PSTALN KTPQEV K + L F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
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| KYP48029.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan] | 5.0e-55 | 64.2 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP++ ++GG+RYFL+++DDFSRK+WVY LK K+EVFD+F EWKVLVE Q GR +K LRTDNGLEF EKF + C +G+ RH V GTPQ+NGL ERFN
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
RTILE+VRCML++A LPK FW EAV++A Y INRCPSTAL FKTPQEV + S L F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
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| KYP63308.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] | 2.0e-56 | 65.43 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP++ ++GG+RYFL+++DDFSRK+WVY LK K+EVFD+F EWKVLVE QIGR +K LRTDNGLEF EKF + C +G+ RH V GTPQ+NGLVERFN
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
RTILE+VRCML++A LPK FW EAV++A Y INRCPSTAL FKTPQEV + S L F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
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| TYK13826.1 putative polyprotein [Cucumis melo var. makuwa] | 3.2e-54 | 63.58 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP K ++ GGSRYF+++IDDFSRK+W+Y LK KDE F KF EWK VENQ GR++K LRTDNGLEF++ KF Q C + GI RH V TPQQNGL ERFN
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
RTI+E+ RC+L+NA+LP FWGEA TA YLINR PSTALN KTPQEV K + L F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
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| TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 3.2e-54 | 63.58 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP K ++ GGSRYF+++IDDFSRK+W+Y LK KDE F KF EWK VENQ GR++K LRTDNGLEF++ KF Q C + GI RH V TPQQNGL ERFN
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
RTI+E+ RC+L+NA+LP FWGEA TA YLINR PSTALN KTPQEV K + L F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A151RZS8 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) | 2.4e-55 | 64.2 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP++ ++GG+RYFL+++DDFSRK+WVY LK K+EVFD+F EWKVLVE Q GR +K LRTDNGLEF EKF + C +G+ RH V GTPQ+NGL ERFN
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
RTILE+VRCML++A LPK FW EAV++A Y INRCPSTAL FKTPQEV + S L F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
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| A0A151T8B9 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 9.9e-57 | 65.43 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP++ ++GG+RYFL+++DDFSRK+WVY LK K+EVFD+F EWKVLVE QIGR +K LRTDNGLEF EKF + C +G+ RH V GTPQ+NGLVERFN
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
RTILE+VRCML++A LPK FW EAV++A Y INRCPSTAL FKTPQEV + S L F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
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| A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class | 1.6e-54 | 63.58 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP K ++ GGSRYF+++IDDFSRK+W+Y LK KDE F KF EWK VENQ GR++K LRTDNGLEF++ KF Q C + GI RH V TPQQNGL ERFN
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
RTI+E+ RC+L+NA+LP FWGEA TA YLINR PSTALN KTPQEV K + L F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
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| A0A5D3CTV2 Putative polyprotein | 1.6e-54 | 63.58 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP K ++ GGSRYF+++IDDFSRK+W+Y LK KDE F KF EWK VENQ GR++K LRTDNGLEF++ KF Q C + GI RH V TPQQNGL ERFN
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
RTI+E+ RC+L+NA+LP FWGEA TA YLINR PSTALN KTPQEV K + L F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
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| A0A5D3DNU1 Putative gag-pol polyprotein | 1.6e-54 | 63.58 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP K ++ GGSRYF+++IDDFSRK+W+Y LK KDE F KF EWK VENQ GR++K LRTDNGLEF++ KF Q C + GI RH V TPQQNGL ERFN
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
RTI+E+ RC+L+NA+LP FWGEA TA YLINR PSTALN KTPQEV K + L F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 5.2e-31 | 44.51 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP +T YF+ +D F+ YL+K K +VF F ++ E ++ L DNG E+LS + +Q C GI HL VP TPQ NG+ ER
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTAL--NFKTPQEVMVRKTSFISSLENF
RTI EK R M+S A L K FWGEAV TATYLINR PS AL + KTP E+ K ++ L F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTAL--NFKTPQEVMVRKTSFISSLENF
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.6e-46 | 54.94 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
GP ++ + GG++YF+T IDD SRKLWVY+LKTKD+VF F ++ LVE + GR++K LR+DNG E+ S +F++ C++ GI VPGTPQ NG+ ER N
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFN
Query: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
RTI+EKVR ML A LPK FWGEAV TA YLINR PS L F+ P+ V K S L+ F
Subjt: RTILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTPQEVMVRKTSFISSLENF
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 1.3e-10 | 25.93 | Show/hide |
Query: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLL--KTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVER
GP + YF++ D+ +R WVY L + ++ + + F ++NQ R+ +++ D G E+ ++ + GI + +G+ ER
Subjt: GPAKVMTYGGSRYFLTLIDDFSRKLWVYLL--KTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVER
Query: FNRTILEKVRCMLSNANLPKVFWGEAVNTATYLIN
NRT+L R +L + LP W AV +T + N
Subjt: FNRTILEKVRCMLSNANLPKVFWGEAVNTATYLIN
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 6.4e-21 | 38.46 | Show/hide |
Query: VMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLS--EKFKQLCNTSGIGRHLIVPGTPQQNGLVERFNRT
++++ RY++ +D F+R W+Y LK K +V + F +K L+EN+ RI +DNG EF++ E F Q GI P TP+ NGL ER +R
Subjt: VMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLS--EKFKQLCNTSGIGRHLIVPGTPQQNGLVERFNRT
Query: ILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTP
I+E +LS+A++PK +W A A YLINR P+ L ++P
Subjt: ILEKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTP
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 5.8e-22 | 39.01 | Show/hide |
Query: VMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFNRTIL
+++ RY++ +D F+R W+Y LK K +V D F +K LVEN+ RI L +DNG EF+ + + GI P TP+ NGL ER +R I+
Subjt: VMTYGGSRYFLTLIDDFSRKLWVYLLKTKDEVFDKFFEWKVLVENQIGRRIKMLRTDNGLEFLSEKFKQLCNTSGIGRHLIVPGTPQQNGLVERFNRTIL
Query: EKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTP
E +LS+A++PK +W A + A YLINR P+ L ++P
Subjt: EKVRCMLSNANLPKVFWGEAVNTATYLINRCPSTALNFKTP
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