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Moc08g15560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g15560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr8:11961828..11965195
RNA-Seq ExpressionMoc08g15560
SyntenyMoc08g15560
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022136647.1 uncharacterized protein LOC111008302 [Momordica charantia]1.4e-5147.77Show/hide
Query:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV
        ++K   K      QF    V +V R+EN NADALA+LASAYET L+R VP+E+L+ P I +  L +                         E RKL+ + 
Subjt:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV

Query:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF
          ++++   LY+RGFSLPLLRCL  +E  YVLR +HEGV  +HSGARS++ K+IRQGYYWP+L +D+K+FV+ CD  QR+  I H+PPELLTPIS+PWPF
Subjt:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF

Query:  TKWGLDLIGPLSTDKGQVNHAIVA
         +WG+D+IGP    +GQ   A+VA
Subjt:  TKWGLDLIGPLSTDKGQVNHAIVA

XP_022143486.1 uncharacterized protein LOC111013362 [Momordica charantia]2.5e-5348.21Show/hide
Query:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV
        ++K   K      QF    V ++ R+EN NADALA+LASAYET+L+R VP+E+L+ P I +  L +                         E RKL+ + 
Subjt:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV

Query:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF
          ++++ G LY+RGFSLPLLRCL  +E  YVLR +HEGV  +HSGARS++ K+IRQGYYWP+L +D K+FV+ CD  QR+  I H+PPELLTPIS+PWPF
Subjt:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF

Query:  TKWGLDLIGPLSTDKGQVNHAIVA
         +WG+D+IGP    KGQ   A+VA
Subjt:  TKWGLDLIGPLSTDKGQVNHAIVA

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]4.9e-5751.56Show/hide
Query:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ-------------------------SEERKLSCK
        +++  +K   L  QFE+  + QV RSEN NAD LARLASAY+T+L R VP+E+L E  +DQ +L +                         S+ RKL  +
Subjt:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ-------------------------SEERKLSCK

Query:  VVYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWP
          +Y++Q+GKL+KRG+SLPLLRCLD +EA YV+R +HEGV  +H GA+SMA K++RQGYYW +++RD K+F K CDK QRFA I  +PPE+LT ISSPWP
Subjt:  VVYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWP

Query:  FTKWGLDLIGPLSTDKGQVNHAIVA
        F +WG+DLIGPL   KGQ+  AIVA
Subjt:  FTKWGLDLIGPLSTDKGQVNHAIVA

XP_022158215.1 uncharacterized protein LOC111024751 [Momordica charantia]4.6e-5555.39Show/hide
Query:  QVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ-------------------------SEERKLSCKVVYYIIQQGKLYKRGFSLPLL
        +V RSEN NADALA LASAYET+L R VP+E+L E  IDQ ++                           S+ RKL  +  +Y++Q+GKL+KRG+SLPLL
Subjt:  QVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ-------------------------SEERKLSCKVVYYIIQQGKLYKRGFSLPLL

Query:  RCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPFTKWGLDLIGPLSTDKGQVNH
        RCLD +EA YV+R +HEGV  +H GARSMA K++RQGYYWP+++RD K+F K CDK QRFA I  +PPE+LTPISSPWPF +WG+DLI PL   KGQ+  
Subjt:  RCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPFTKWGLDLIGPLSTDKGQVNH

Query:  AIVA
        AIVA
Subjt:  AIVA

XP_022158219.1 protein NYNRIN-like [Momordica charantia]4.8e-5247.77Show/hide
Query:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV
        ++K   K      QF    V ++ R+EN NADALA+LASAYET+L+R VP+E+L+ P I +  L +                         E RKL+ +V
Subjt:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV

Query:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF
          ++++ G LY+RGFSLPLLRCL  +E  YVLR +HEGV  +HSGARS++ K+IRQGYYWP+L +D K+FV+ CD  QR+  + H+PPELLTPIS+ WPF
Subjt:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF

Query:  TKWGLDLIGPLSTDKGQVNHAIVA
         +WG+D+IGP    KGQ   A+VA
Subjt:  TKWGLDLIGPLSTDKGQVNHAIVA

TrEMBL top hitse value%identityAlignment
A0A6J1C617 Ribonuclease H6.8e-5247.77Show/hide
Query:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV
        ++K   K      QF    V +V R+EN NADALA+LASAYET L+R VP+E+L+ P I +  L +                         E RKL+ + 
Subjt:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV

Query:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF
          ++++   LY+RGFSLPLLRCL  +E  YVLR +HEGV  +HSGARS++ K+IRQGYYWP+L +D+K+FV+ CD  QR+  I H+PPELLTPIS+PWPF
Subjt:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF

Query:  TKWGLDLIGPLSTDKGQVNHAIVA
         +WG+D+IGP    +GQ   A+VA
Subjt:  TKWGLDLIGPLSTDKGQVNHAIVA

A0A6J1CQD7 Ribonuclease H1.2e-5348.21Show/hide
Query:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV
        ++K   K      QF    V ++ R+EN NADALA+LASAYET+L+R VP+E+L+ P I +  L +                         E RKL+ + 
Subjt:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV

Query:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF
          ++++ G LY+RGFSLPLLRCL  +E  YVLR +HEGV  +HSGARS++ K+IRQGYYWP+L +D K+FV+ CD  QR+  I H+PPELLTPIS+PWPF
Subjt:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF

Query:  TKWGLDLIGPLSTDKGQVNHAIVA
         +WG+D+IGP    KGQ   A+VA
Subjt:  TKWGLDLIGPLSTDKGQVNHAIVA

A0A6J1DV78 Ribonuclease H2.2e-5555.39Show/hide
Query:  QVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ-------------------------SEERKLSCKVVYYIIQQGKLYKRGFSLPLL
        +V RSEN NADALA LASAYET+L R VP+E+L E  IDQ ++                           S+ RKL  +  +Y++Q+GKL+KRG+SLPLL
Subjt:  QVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ-------------------------SEERKLSCKVVYYIIQQGKLYKRGFSLPLL

Query:  RCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPFTKWGLDLIGPLSTDKGQVNH
        RCLD +EA YV+R +HEGV  +H GARSMA K++RQGYYWP+++RD K+F K CDK QRFA I  +PPE+LTPISSPWPF +WG+DLI PL   KGQ+  
Subjt:  RCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPFTKWGLDLIGPLSTDKGQVNH

Query:  AIVA
        AIVA
Subjt:  AIVA

A0A6J1DWM2 Ribonuclease H2.4e-5751.56Show/hide
Query:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ-------------------------SEERKLSCK
        +++  +K   L  QFE+  + QV RSEN NAD LARLASAY+T+L R VP+E+L E  +DQ +L +                         S+ RKL  +
Subjt:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ-------------------------SEERKLSCK

Query:  VVYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWP
          +Y++Q+GKL+KRG+SLPLLRCLD +EA YV+R +HEGV  +H GA+SMA K++RQGYYW +++RD K+F K CDK QRFA I  +PPE+LT ISSPWP
Subjt:  VVYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWP

Query:  FTKWGLDLIGPLSTDKGQVNHAIVA
        F +WG+DLIGPL   KGQ+  AIVA
Subjt:  FTKWGLDLIGPLSTDKGQVNHAIVA

A0A6J1DYS0 Ribonuclease H2.3e-5247.77Show/hide
Query:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV
        ++K   K      QF    V ++ R+EN NADALA+LASAYET+L+R VP+E+L+ P I +  L +                         E RKL+ +V
Subjt:  LKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQ------------------------SEERKLSCKV

Query:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF
          ++++ G LY+RGFSLPLLRCL  +E  YVLR +HEGV  +HSGARS++ K+IRQGYYWP+L +D K+FV+ CD  QR+  + H+PPELLTPIS+ WPF
Subjt:  VYYIIQQGKLYKRGFSLPLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPF

Query:  TKWGLDLIGPLSTDKGQVNHAIVA
         +WG+D+IGP    KGQ   A+VA
Subjt:  TKWGLDLIGPLSTDKGQVNHAIVA

SwissProt top hitse value%identityAlignment
Q8K259 Gypsy retrotransposon integrase-like protein 11.6e-0531.43Show/hide
Query:  LDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQ--RFAIIPHRPPELLTPISSPWPFTKWGLDLIGPLSTDKGQVNH
        +  +E   VLR  HE     H G  S    ++  GYYW S+  D+KQ+V  C   Q  +  +I   P + L  + +PW      +DL+GP  T      +
Subjt:  LDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQ--RFAIIPHRPPELLTPISSPWPFTKWGLDLIGPLSTDKGQVNH

Query:  AIVAT
        AI+ T
Subjt:  AIVAT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATCAATCAGTTCTCTGTGAGACAGTTGATGAAGCTTCCAGCCTCTCATCTTGGAATGGTTAAACAGCAAGATCGTGAGTTCCTGGCCGACTACGTCACGCGGTT
CATGGACGACATATCAAGCAAACTAGCCACCTCCTTGAATGAGCTACTCATTGGGGCAAGGTGGTACATTGATGGCCTCGAGCTATGGCAGGCCAATGGCGGGAAGCGGT
ATAATGGCCGAGACGACAAAACTCAAAAGAAATGGGAAGATGACCCTGAGATTCTTGTAGCCGTGGAGGAAGGTGAGTTGGAGAATTTACTCTCACCACCATGGAAGATG
CGCAAGCCGAGCGACAAGAAGGACAGAACAAAGTACTGTCGCTTCCATAAAGACCACAGCTTGGACATCTCGGCTTGCTGCGCATTGAAAGACCAGATCGAGGACCTCAT
TCGACGTGGTTACCTTAAAAGGTACGTTGCCTCTCGTAACAGAGACGAGCCGACCACATCAACCAAAGACAACAGGGAGAGGTCCCAAACGCCACTTCGGTGCACGGGTG
ACCGAACCCTAATAATCAACACCATCGCGGGAGGGCCTAAAGATGGGCAGTCGGGTCAGAAGTGCAAGGCGCTGATCCGAGAGGCAGCACATTGTTGGCACGCTCTCGAG
ACCCAAGAGGATAGCGAGGAAGACTCGGTGGTGGTGTTCGGGTGGAAACCGTTGAAGAAAAGTTCTTCAAAGGGGAATGAACTATTCGGCCAGTTCGAGGAGTGCGCAGT
CTGCCAAGTGCTGAGGTCGGAAAATTTGAATGCCGATGCGCTCGCCCGACTAGCTTCCGCATACGAGACTGAACTCTCCCGCTTGGTCCCTATGGAAATGCTTAATGAGC
CCTTCATCGACCAGACCAAGCTGACCCAGTCTGAGGAAAGGAAGTTGAGCTGCAAAGTCGTCTACTATATCATCCAGCAAGGGAAACTCTACAAACGAGGTTTCTCCCTT
CCTCTCCTCAGGTGCCTCGACTCAGACGAAGCTGACTATGTTTTGAGGGGAATGCATGAAGGAGTGTCTGAAAGCCACTCCGGTGCTCGGTCCATGGCGTTCAAAATAAT
TAGGCAAGGCTACTATTGGCCTAGCCTAGACCGCGACATGAAGCAGTTTGTCAAAAAGTGTGACAAGTACCAACGCTTCGCCATCATACCGCACCGACCTCCGGAGCTGC
TCACACCCATTTCGAGCCCATGGCCTTTTACTAAGTGGGGCCTGGACCTCATTGGACCTCTCTCCACCGACAAGGGTCAGGTCAACCATGCAATTGTAGCCACGGTTACT
TCACCAAATGGGTCAAGGTCGAGCACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCATCAATCAGTTCTCTGTGAGACAGTTGATGAAGCTTCCAGCCTCTCATCTTGGAATGGTTAAACAGCAAGATCGTGAGTTCCTGGCCGACTACGTCACGCGGTT
CATGGACGACATATCAAGCAAACTAGCCACCTCCTTGAATGAGCTACTCATTGGGGCAAGGTGGTACATTGATGGCCTCGAGCTATGGCAGGCCAATGGCGGGAAGCGGT
ATAATGGCCGAGACGACAAAACTCAAAAGAAATGGGAAGATGACCCTGAGATTCTTGTAGCCGTGGAGGAAGGTGAGTTGGAGAATTTACTCTCACCACCATGGAAGATG
CGCAAGCCGAGCGACAAGAAGGACAGAACAAAGTACTGTCGCTTCCATAAAGACCACAGCTTGGACATCTCGGCTTGCTGCGCATTGAAAGACCAGATCGAGGACCTCAT
TCGACGTGGTTACCTTAAAAGGTACGTTGCCTCTCGTAACAGAGACGAGCCGACCACATCAACCAAAGACAACAGGGAGAGGTCCCAAACGCCACTTCGGTGCACGGGTG
ACCGAACCCTAATAATCAACACCATCGCGGGAGGGCCTAAAGATGGGCAGTCGGGTCAGAAGTGCAAGGCGCTGATCCGAGAGGCAGCACATTGTTGGCACGCTCTCGAG
ACCCAAGAGGATAGCGAGGAAGACTCGGTGGTGGTGTTCGGGTGGAAACCGTTGAAGAAAAGTTCTTCAAAGGGGAATGAACTATTCGGCCAGTTCGAGGAGTGCGCAGT
CTGCCAAGTGCTGAGGTCGGAAAATTTGAATGCCGATGCGCTCGCCCGACTAGCTTCCGCATACGAGACTGAACTCTCCCGCTTGGTCCCTATGGAAATGCTTAATGAGC
CCTTCATCGACCAGACCAAGCTGACCCAGTCTGAGGAAAGGAAGTTGAGCTGCAAAGTCGTCTACTATATCATCCAGCAAGGGAAACTCTACAAACGAGGTTTCTCCCTT
CCTCTCCTCAGGTGCCTCGACTCAGACGAAGCTGACTATGTTTTGAGGGGAATGCATGAAGGAGTGTCTGAAAGCCACTCCGGTGCTCGGTCCATGGCGTTCAAAATAAT
TAGGCAAGGCTACTATTGGCCTAGCCTAGACCGCGACATGAAGCAGTTTGTCAAAAAGTGTGACAAGTACCAACGCTTCGCCATCATACCGCACCGACCTCCGGAGCTGC
TCACACCCATTTCGAGCCCATGGCCTTTTACTAAGTGGGGCCTGGACCTCATTGGACCTCTCTCCACCGACAAGGGTCAGGTCAACCATGCAATTGTAGCCACGGTTACT
TCACCAAATGGGTCAAGGTCGAGCACCTGA
Protein sequenceShow/hide protein sequence
MFINQFSVRQLMKLPASHLGMVKQQDREFLADYVTRFMDDISSKLATSLNELLIGARWYIDGLELWQANGGKRYNGRDDKTQKKWEDDPEILVAVEEGELENLLSPPWKM
RKPSDKKDRTKYCRFHKDHSLDISACCALKDQIEDLIRRGYLKRYVASRNRDEPTTSTKDNRERSQTPLRCTGDRTLIINTIAGGPKDGQSGQKCKALIREAAHCWHALE
TQEDSEEDSVVVFGWKPLKKSSSKGNELFGQFEECAVCQVLRSENLNADALARLASAYETELSRLVPMEMLNEPFIDQTKLTQSEERKLSCKVVYYIIQQGKLYKRGFSL
PLLRCLDSDEADYVLRGMHEGVSESHSGARSMAFKIIRQGYYWPSLDRDMKQFVKKCDKYQRFAIIPHRPPELLTPISSPWPFTKWGLDLIGPLSTDKGQVNHAIVATVT
SPNGSRSST