; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g16460 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g16460
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:12661734..12663898
RNA-Seq ExpressionMoc08g16460
SyntenyMoc08g16460
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015873545.1 uncharacterized protein LOC107410610 [Ziziphus jujuba]9.1e-2037.04Show/hide
Query:  SSSVIAQKTKACMQRLFD--WGRPKIGGDKAKIRVASA--CVQDKLSDLPHQSNWDYLFAAK-----SEL---ERLLIDSIMNCDLTKPFREEEILTDLQ
        S + I Q+   C Q L D  +  P I   +   +V     C+ DK      Q + D LF  K     S+L   ER  +   MN +L KPF E+E+ T L 
Subjt:  SSSVIAQKTKACMQRLFD--WGRPKIGGDKAKIRVASA--CVQDKLSDLPHQSNWDYLFAAK-----SEL---ERLLIDSIMNCDLTKPFREEEILTDLQ

Query:  QIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQS
        Q++P KA G D                        +LN GA    +N TLI L+PKV  P  ++DYRPIS  +V+Y +ISKTLVNR+K  L  +IS +QS
Subjt:  QIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQS

Query:  AFIPGRPVVINSIWGF
        AF+PGR +  N +  F
Subjt:  AFIPGRPVVINSIWGF

XP_022149385.1 uncharacterized protein LOC111017816 [Momordica charantia]1.4e-2039.39Show/hide
Query:  LTKPFREEEILTDLQQIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVN
        L K F  E++    +QI PHKA GPD                        VLN+   PAPLNETLI LIPKV  P RIT++RPISL NV Y +I K +VN
Subjt:  LTKPFREEEILTDLQQIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVN

Query:  RMKRVLNTIISPQQSAFIPGRPVVINSIWGFH----LSCHKTNGIHWVLLKIAYGGG-----SKGGKTSSFMDTN-IGWTPPLSGVVYYAVGIFFAEA
        RMKR+L  IIS  QSAF+PGR VV N+I G+     +    + G  W +    Y  G      +GG + + +  + I   P +S + +    +FF  A
Subjt:  RMKRVLNTIISPQQSAFIPGRPVVINSIWGFH----LSCHKTNGIHWVLLKIAYGGG-----SKGGKTSSFMDTN-IGWTPPLSGVVYYAVGIFFAEA

XP_023874626.1 uncharacterized protein LOC111987155 [Quercus suber]2.4e-2045.93Show/hide
Query:  MNCDLTKPFREEEILTDLQQIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISK
        MN DL   F+ EE+   LQQ+HP KA GPD                        VLN G  P  +NET I LIPKV  P +IT++RPISL NVVY +ISK
Subjt:  MNCDLTKPFREEEILTDLQQIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISK

Query:  TLVNRMKRVLNTIISPQQSAFIPGRPVVINSIWGF
         L NR+K VL  +I   QSAF+PGR ++ N +  F
Subjt:  TLVNRMKRVLNTIISPQQSAFIPGRPVVINSIWGF

XP_035551721.1 uncharacterized protein LOC118349890 [Juglans regia]3.0e-2338.95Show/hide
Query:  ACMQRLFDWGRPKIGGDKAKIRVASACVQDKLSDLPHQSNWDYLFAAKSELERLLIDSIMNCDLTKPFREEEILTDLQQIHPHKALGPDVLNHGAFPAPL
        +C  +L  W + K G            VQ KL +  H+ + +       +     +   MN +L K F   E+L  L+++HP+KA GPDVLNHG  P  L
Subjt:  ACMQRLFDWGRPKIGGDKAKIRVASACVQDKLSDLPHQSNWDYLFAAKSELERLLIDSIMNCDLTKPFREEEILTDLQQIHPHKALGPDVLNHGAFPAPL

Query:  NETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPGRPVVINSIWGFHL
        N T I L+PK   P  + D RPISL NV Y LI K + NR+K+VL  IIS  QS+FIPGR +  N +  + +
Subjt:  NETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPGRPVVINSIWGFHL

XP_042983363.1 uncharacterized protein LOC122312776 [Carya illinoinensis]2.7e-2447.06Show/hide
Query:  MNCDLTKPFREEEILTDLQQIHPHKALGPDVLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPG
        MN +L KP+  EE+   L+Q+HP KA GPD LN G FP+ LN T I LIPK   P ++ D+RPISL NV+Y ++SK + NR+KRVL  IIS  QSAF+PG
Subjt:  MNCDLTKPFREEEILTDLQQIHPHKALGPDVLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPG

Query:  RPVVINSIWGFHLSCHKTNGIHWVLLKIAYGGGSKG
        R +  N +  + L       +H++  K    G  KG
Subjt:  RPVVINSIWGFHLSCHKTNGIHWVLLKIAYGGGSKG

TrEMBL top hitse value%identityAlignment
A0A2N9H7G2 Reverse transcriptase domain-containing protein2.6e-2052.94Show/hide
Query:  MNCDLTKPFREEEILTDLQQIHPHKALGPDVLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPG
        MN  L + F EEEI T L Q+ P KA GPD L     P+ LN T I LIPK   PL + DYRPISL NVVY L++KTL NR+K++L  IIS  QSAFIPG
Subjt:  MNCDLTKPFREEEILTDLQQIHPHKALGPDVLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPG

Query:  RPVVINSIWGFHLSCHKTN
        R +V N +  +    H  N
Subjt:  RPVVINSIWGFHLSCHKTN

A0A6J1D5K1 uncharacterized protein LOC1110178166.8e-2139.39Show/hide
Query:  LTKPFREEEILTDLQQIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVN
        L K F  E++    +QI PHKA GPD                        VLN+   PAPLNETLI LIPKV  P RIT++RPISL NV Y +I K +VN
Subjt:  LTKPFREEEILTDLQQIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVN

Query:  RMKRVLNTIISPQQSAFIPGRPVVINSIWGFH----LSCHKTNGIHWVLLKIAYGGG-----SKGGKTSSFMDTN-IGWTPPLSGVVYYAVGIFFAEA
        RMKR+L  IIS  QSAF+PGR VV N+I G+     +    + G  W +    Y  G      +GG + + +  + I   P +S + +    +FF  A
Subjt:  RMKRVLNTIISPQQSAFIPGRPVVINSIWGFH----LSCHKTNGIHWVLLKIAYGGG-----SKGGKTSSFMDTN-IGWTPPLSGVVYYAVGIFFAEA

A0A6P3Z8V7 uncharacterized protein LOC1074106104.4e-2037.04Show/hide
Query:  SSSVIAQKTKACMQRLFD--WGRPKIGGDKAKIRVASA--CVQDKLSDLPHQSNWDYLFAAK-----SEL---ERLLIDSIMNCDLTKPFREEEILTDLQ
        S + I Q+   C Q L D  +  P I   +   +V     C+ DK      Q + D LF  K     S+L   ER  +   MN +L KPF E+E+ T L 
Subjt:  SSSVIAQKTKACMQRLFD--WGRPKIGGDKAKIRVASA--CVQDKLSDLPHQSNWDYLFAAK-----SEL---ERLLIDSIMNCDLTKPFREEEILTDLQ

Query:  QIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQS
        Q++P KA G D                        +LN GA    +N TLI L+PKV  P  ++DYRPIS  +V+Y +ISKTLVNR+K  L  +IS +QS
Subjt:  QIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQS

Query:  AFIPGRPVVINSIWGF
        AF+PGR +  N +  F
Subjt:  AFIPGRPVVINSIWGF

A0A6P9EWW1 uncharacterized protein LOC1183498901.5e-2338.95Show/hide
Query:  ACMQRLFDWGRPKIGGDKAKIRVASACVQDKLSDLPHQSNWDYLFAAKSELERLLIDSIMNCDLTKPFREEEILTDLQQIHPHKALGPDVLNHGAFPAPL
        +C  +L  W + K G            VQ KL +  H+ + +       +     +   MN +L K F   E+L  L+++HP+KA GPDVLNHG  P  L
Subjt:  ACMQRLFDWGRPKIGGDKAKIRVASACVQDKLSDLPHQSNWDYLFAAKSELERLLIDSIMNCDLTKPFREEEILTDLQQIHPHKALGPDVLNHGAFPAPL

Query:  NETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPGRPVVINSIWGFHL
        N T I L+PK   P  + D RPISL NV Y LI K + NR+K+VL  IIS  QS+FIPGR +  N +  + +
Subjt:  NETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPGRPVVINSIWGFHL

A0A803QP43 Uncharacterized protein2.6e-2041.57Show/hide
Query:  RLLIDSIMNCDLTKPFREEEILTDLQQIHPHKALGP------------------------DVLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNV
        RL ID   N  L +PF  +E+   +  IHP KA G                         D+LN+ A  +P+NETLI L+PKVP+P ++ ++RPISL NV
Subjt:  RLLIDSIMNCDLTKPFREEEILTDLQQIHPHKALGP------------------------DVLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNV

Query:  VYMLISKTLVNRMKRVLNTIISPQQSAFIPGRPVVINSIWGFHLSCHKTNGIHWVLLKIAYGGGSK
        VY ++SK L NRMK+ LNT+IS  QSAFI GR +  N+I GF  S H        + K+ +G G K
Subjt:  VYMLISKTLVNRMKRVLNTIISPQQSAFIPGRPVVINSIWGFHLSCHKTNGIHWVLLKIAYGGGSK

SwissProt top hitse value%identityAlignment
P08548 LINE-1 reverse transcriptase homolog1.0e-0530.58Show/hide
Query:  LTKPFREEEILTDLQQIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKV-PQPLRITDYRPISLSNVVYMLISKTLV
        L +P    EI + +Q +   K+ GPD                        +   G  P    E  I LIPK    P R  +YRPISL N+   +++K L 
Subjt:  LTKPFREEEILTDLQQIHPHKALGPD------------------------VLNHGAFPAPLNETLIVLIPKV-PQPLRITDYRPISLSNVVYMLISKTLV

Query:  NRMKRVLNTIISPQQSAFIPG
        NR+++ +  II   Q  FIPG
Subjt:  NRMKRVLNTIISPQQSAFIPG

P11369 LINE-1 retrotransposable element ORF2 protein7.7e-0644.12Show/hide
Query:  GAFPAPLNETLIVLIPKVPQ--PLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPG
        G  P    E  I LIPK PQ  P +I ++RPISL N+   +++K L NR++  +  II P Q  FIPG
Subjt:  GAFPAPLNETLIVLIPKVPQ--PLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPG

P14381 Transposon TX1 uncharacterized 149 kDa protein8.6e-0532.18Show/hide
Query:  LGPD-------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPGRPVVIN
        LGPD           G  P      ++ L+PK      I ++RP+SL +  Y +++K +  R+K VL  +I P QS  +PGR +  N
Subjt:  LGPD-------VLNHGAFPAPLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPGRPVVIN

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTTCGTCAGTTATAGCCCAGAAAACAAAAGCGTGTATGCAGCGGTTATTTGATTGGGGGCGCCCAAAAATAGGTGGGGACAAGGCGAAAATTCGAGTGGCTTC
AGCTTGTGTACAAGACAAGCTCTCTGATCTTCCCCACCAATCCAATTGGGATTATCTTTTTGCCGCGAAATCTGAATTGGAACGACTCCTAATCGATTCTATAATGAATT
GCGATCTTACCAAACCTTTCAGGGAGGAGGAGATTTTGACGGACTTACAGCAAATTCATCCTCACAAAGCTCTTGGTCCTGATGTTTTAAACCATGGCGCCTTCCCAGCC
CCTTTAAATGAAACTCTGATTGTTCTTATCCCTAAAGTCCCGCAGCCCCTGCGTATTACAGATTACAGGCCAATTTCTCTCTCTAATGTCGTTTATATGCTGATTTCCAA
AACTCTTGTTAATAGGATGAAACGAGTTCTAAACACCATTATTTCTCCCCAACAAAGTGCTTTCATTCCAGGCCGACCCGTCGTCATTAACAGTATTTGGGGCTTCCATC
TTTCATGCCACAAAACCAACGGAATACATTGGGTTTTATTAAAGATCGCGTATGGCGGCGGCTCCAAGGGTGGCAAGACTAGTTCGTTTATGGACACGAACATTGGTTGG
ACCCCTCCTTTATCTGGCGTAGTATACTATGCGGTCGGGATCTTCTTCGCCGAGGCCTTCGTTGGCGGGTGGGCAATTGGTGAATCGATTAAGGTGTACGGGACTAATTG
GCTTCCTCGGGATGTGTTGCTTCAGGTTCGCTCACCTTGGCATCTTCCAGTTTCAAGCCATGTTTGCGATCTTTTCACAGCCTTGGGCCCATTGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTTCGTCAGTTATAGCCCAGAAAACAAAAGCGTGTATGCAGCGGTTATTTGATTGGGGGCGCCCAAAAATAGGTGGGGACAAGGCGAAAATTCGAGTGGCTTC
AGCTTGTGTACAAGACAAGCTCTCTGATCTTCCCCACCAATCCAATTGGGATTATCTTTTTGCCGCGAAATCTGAATTGGAACGACTCCTAATCGATTCTATAATGAATT
GCGATCTTACCAAACCTTTCAGGGAGGAGGAGATTTTGACGGACTTACAGCAAATTCATCCTCACAAAGCTCTTGGTCCTGATGTTTTAAACCATGGCGCCTTCCCAGCC
CCTTTAAATGAAACTCTGATTGTTCTTATCCCTAAAGTCCCGCAGCCCCTGCGTATTACAGATTACAGGCCAATTTCTCTCTCTAATGTCGTTTATATGCTGATTTCCAA
AACTCTTGTTAATAGGATGAAACGAGTTCTAAACACCATTATTTCTCCCCAACAAAGTGCTTTCATTCCAGGCCGACCCGTCGTCATTAACAGTATTTGGGGCTTCCATC
TTTCATGCCACAAAACCAACGGAATACATTGGGTTTTATTAAAGATCGCGTATGGCGGCGGCTCCAAGGGTGGCAAGACTAGTTCGTTTATGGACACGAACATTGGTTGG
ACCCCTCCTTTATCTGGCGTAGTATACTATGCGGTCGGGATCTTCTTCGCCGAGGCCTTCGTTGGCGGGTGGGCAATTGGTGAATCGATTAAGGTGTACGGGACTAATTG
GCTTCCTCGGGATGTGTTGCTTCAGGTTCGCTCACCTTGGCATCTTCCAGTTTCAAGCCATGTTTGCGATCTTTTCACAGCCTTGGGCCCATTGAAATGA
Protein sequenceShow/hide protein sequence
MSSSSVIAQKTKACMQRLFDWGRPKIGGDKAKIRVASACVQDKLSDLPHQSNWDYLFAAKSELERLLIDSIMNCDLTKPFREEEILTDLQQIHPHKALGPDVLNHGAFPA
PLNETLIVLIPKVPQPLRITDYRPISLSNVVYMLISKTLVNRMKRVLNTIISPQQSAFIPGRPVVINSIWGFHLSCHKTNGIHWVLLKIAYGGGSKGGKTSSFMDTNIGW
TPPLSGVVYYAVGIFFAEAFVGGWAIGESIKVYGTNWLPRDVLLQVRSPWHLPVSSHVCDLFTALGPLK