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Moc08g16470 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g16470
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr8:12664467..12668446
RNA-Seq ExpressionMoc08g16470
SyntenyMoc08g16470
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ22393.1 putative RNA-directed DNA polymerase [Rosa chinensis]1.9e-0743.43Show/hide
Query:  GGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDMSFSLLRFD-DAIALV
        G V S S     +  WK P  G FK+NTDA++N+ SLS G+G LIRDS+G  +L G     +  S   AEA+AI  GLSLA  +S S  + + D++ L+
Subjt:  GGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDMSFSLLRFD-DAIALV

TXG47194.1 hypothetical protein EZV62_026488 [Acer yangbiense]1.4e-0735.25Show/hide
Query:  AGPLDSWVVNFIPTFSRAQGPGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLS
        A  +  W  +F+  F ++  P  V      +R   +W AP  G FK+NTDA+ N    S G+G++IR+ +GQ+ML+         S  +AEALA+ EGL 
Subjt:  AGPLDSWVVNFIPTFSRAQGPGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLS

Query:  LA-LDMSFSLLRFDDAIALVPE
        LA L   F  +   DA+ +V +
Subjt:  LA-LDMSFSLLRFDDAIALVPE

XP_028089597.1 uncharacterized protein LOC114289948 [Camellia sinensis]1.4e-0728.79Show/hide
Query:  SWVVNFIPTFSRAQGPGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDM
        S+ VN++  + +AQ  G + +    + R  RW  PR G FK+N D S      S GVGI+IRD  G+++ +    +PY   V+  EA+   + L L  D+
Subjt:  SWVVNFIPTFSRAQGPGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDM

Query:  SFSLLRFD----DAIALVPEKDKKRQASNGRT
            +  +    + +A +  ++K   A N ++
Subjt:  SFSLLRFD----DAIALVPEKDKKRQASNGRT

XP_042979948.1 uncharacterized protein LOC122310131 [Carya illinoinensis]1.1e-0738.3Show/hide
Query:  RRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDMSFS-LLRFDDAIALVPEKDK
        R+ CRW+ P+PG FK+N D +      S G+G ++RDS+G++++A S      G     E LAI  GL L L +    L+   DA+ LV E  K
Subjt:  RRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDMSFS-LLRFDDAIALVPEKDK

XP_042984282.1 uncharacterized protein LOC122313374 [Carya illinoinensis]1.9e-0731.67Show/hide
Query:  GPLDSWVVNFIPTFSRAQGPGGVASGS-RVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLS
        G L +   + I  +  AQ   G+ +G  RV R   RW+APR G  KVN DA++   +  +G+G++IRD +G+++++      Y  S  +AEA A+   + 
Subjt:  GPLDSWVVNFIPTFSRAQGPGGVASGS-RVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLS

Query:  LALDMSFSLLRFD-DAIALV
        L ++++F  + F+ DA+ ++
Subjt:  LALDMSFSLLRFD-DAIALV

TrEMBL top hitse value%identityAlignment
A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)3.4e-0738.64Show/hide
Query:  PGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDMSFS
        PG   +      +   W  P P  +K+NTDA+ +      G+G +IR+ QG +M A +   PY+G V +AEALAI EGL LA +++ S
Subjt:  PGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDMSFS

A0A2P6PKD3 Putative RNA-directed DNA polymerase9.1e-0843.43Show/hide
Query:  GGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDMSFSLLRFD-DAIALV
        G V S S     +  WK P  G FK+NTDA++N+ SLS G+G LIRDS+G  +L G     +  S   AEA+AI  GLSLA  +S S  + + D++ L+
Subjt:  GGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDMSFSLLRFD-DAIALV

A0A5C7GQX3 RNase H domain-containing protein6.9e-0835.25Show/hide
Query:  AGPLDSWVVNFIPTFSRAQGPGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLS
        A  +  W  +F+  F ++  P  V      +R   +W AP  G FK+NTDA+ N    S G+G++IR+ +GQ+ML+         S  +AEALA+ EGL 
Subjt:  AGPLDSWVVNFIPTFSRAQGPGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLS

Query:  LA-LDMSFSLLRFDDAIALVPE
        LA L   F  +   DA+ +V +
Subjt:  LA-LDMSFSLLRFDDAIALVPE

A0A5C7GV60 RNase H domain-containing protein2.0e-0740.86Show/hide
Query:  WVVNFIPTFSRAQGPGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGL
        W VNF+  + +A G  G    S +    C W  P  G FKVNTDA+ + VS  VG+GI+I+D  G +M +    +    S  LAEA AI  GL
Subjt:  WVVNFIPTFSRAQGPGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGL

A0A5C7HKD5 Uncharacterized protein3.4e-0734.71Show/hide
Query:  WVVNFIPTFSRAQGPGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSV--NLAEALAIKEGLSLALD
        W   F+  F  A    G  S  R +    +W+ P  G FK+NTDA+  +  + VG GI+IRD  G +M  GS   P   +V    AEA+AI  G++ A++
Subjt:  WVVNFIPTFSRAQGPGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSV--NLAEALAIKEGLSLALD

Query:  MSFSLLRFDDAIALVPEKDKK
          F        + LV E D K
Subjt:  MSFSLLRFDDAIALVPEKDKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.4e-0633.33Show/hide
Query:  GVASGSRVERR-ACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDMSFSLLRFD-DAIALV
        G ASG +VER  + +WKAP   + K NTDA++   +   G+G ++R+  G ++  G+  LP   +V  AE  A++  +      ++  + F+ DA ALV
Subjt:  GVASGSRVERR-ACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLALDMSFSLLRFD-DAIALV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGCTGGTCCTCTCGATTCTTGGGTGGTGAATTTCATTCCGACCTTCAGTAGAGCTCAGGGGCCAGGGGGTGTTGCCTCTGGGTCACGAGTGGAGCGGCGT
GCCTGCAGGTGGAAGGCTCCTCGGCCGGGTTATTTCAAGGTGAACACCGACGCTTCTTTTAATTCTGTTTCTTTGAGTGTTGGGGTGGGCATTCTCATTCGAGAT
TCTCAAGGCCAACTCATGCTTGCTGGGTCAGTTTTCCTGCCTTATTATGGTTCAGTTAACTTGGCGGAGGCACTTGCAATTAAAGAGGGTCTGTCTCTAGCGCTT
GATATGAGTTTCTCTTTGCTACGCTTTGATGATGCTATAGCATTGGTTCCAGAAAAAGACAAAAAGCGGCAAGCTAGCAATGGAAGGACTTCTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGCTGGTCCTCTCGATTCTTGGGTGGTGAATTTCATTCCGACCTTCAGTAGAGCTCAGGGGCCAGGGGGTGTTGCCTCTGGGTCACGAGTGGAGCGGCGT
GCCTGCAGGTGGAAGGCTCCTCGGCCGGGTTATTTCAAGGTGAACACCGACGCTTCTTTTAATTCTGTTTCTTTGAGTGTTGGGGTGGGCATTCTCATTCGAGAT
TCTCAAGGCCAACTCATGCTTGCTGGGTCAGTTTTCCTGCCTTATTATGGTTCAGTTAACTTGGCGGAGGCACTTGCAATTAAAGAGGGTCTGTCTCTAGCGCTT
GATATGAGTTTCTCTTTGCTACGCTTTGATGATGCTATAGCATTGGTTCCAGAAAAAGACAAAAAGCGGCAAGCTAGCAATGGAAGGACTTCTCAATAG
Protein sequenceShow/hide protein sequence
MTAGPLDSWVVNFIPTFSRAQGPGGVASGSRVERRACRWKAPRPGYFKVNTDASFNSVSLSVGVGILIRDSQGQLMLAGSVFLPYYGSVNLAEALAIKEGLSLAL
DMSFSLLRFDDAIALVPEKDKKRQASNGRTSQ