; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g16710 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g16710
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr8:12847025..12849242
RNA-Seq ExpressionMoc08g16710
SyntenyMoc08g16710
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]8.7e-16047.97Show/hide
Query:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------
        +DDEPSAELLRMLEEEEKMLG HEELTET+NLGSQAE KE++IG +MSSESRKKLIELLHEY DVF  SYQDMPGLDT+IVVHKL IN +FK        
Subjt:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
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Query:  --------------------QKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENS
                            QK+VR FLG+LNYIARFISHLTAT EPIFKLLRKNNDGVWSE+C+AA DKIKQYL DPPILVPPTPGRP ILYL V ENS
Subjt:  --------------------QKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENS

Query:  MGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYHMAHF--KDGP------------------------------HK
        MG VLGQHDDSGRKE  IYYLSKKFTDCETRYSQVEK   C +LA+   +    +LY+      K  P                               K
Subjt:  MGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYHMAHF--KDGP------------------------------HK

Query:  VIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQAT
         IKGSALADYLAQQPIN+Y+PVKFDFPDEYIS ITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARL FDCT+NMA+YEACSMGVQA 
Subjt:  VIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQAT

Query:  IDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEE
        +DMK                                                     NNQV DALATL VMFNLELNEDV  IKV RRDVP SC+S EEE
Subjt:  IDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEE

Query:  PDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL
        PDGNPWFHDIKQYI SKEYPPNASENDKRT RKL MKFFL
Subjt:  PDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]5.1e-16048.11Show/hide
Query:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------
        +DDEPSAELLRMLEEEEKMLG HEELTET+NLGSQAE KE++IG +MSSESRKKLIELLHEY DVF  SY DM GLDT+IVVHKLPIN EFK        
Subjt:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------QKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENS
                            QKEVR FLG+LNYIARFISHLTAT EPIFKLLRKNNDGV SEDC+AAFDK+KQYLQDPP+LVPPTPGR LILYLTV ENS
Subjt:  --------------------QKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENS

Query:  MGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HK
        MG VLGQHDDSGRKE  IYYLSKKFTDCETRYSQVEK   C +LA+   +    +LY+          + +  + P                       K
Subjt:  MGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HK

Query:  VIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQAT
         IKGSALADYLAQQPIN+Y+PVKFDFPDEYIS ITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPL ARL FDC +NMA+YEACSMGVQA 
Subjt:  VIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQAT

Query:  IDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEE
        IDMK                                                     NNQV DALATL VMFNLELNEDVR IKV RRDVP SC+S EEE
Subjt:  IDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEE

Query:  PDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL
        PDG PWFHDIKQYIKSKEYPPNASENDKRTLRKL +KFFL
Subjt:  PDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]1.7e-16349.31Show/hide
Query:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------
        +DDEPSAELLRMLEEEEKMLG HEELTET+NLGSQAE KE++IG +MSSESRKKLIELLHEY DVF  SYQDMPGLDT+IVVHKLP N +FK        
Subjt:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------

Query:  ---------QKEVRR-------------------------------------------------------------------------------------
                 + EVR+                                                                                     
Subjt:  ---------QKEVRR-------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------FLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQHDDSGRKE
                   FLG+LNYIARFISHLTAT EPIFKLL KNNDGVWSEDC+A+FDKIKQYLQDPPILVPPTPGRPLILYLTV ENS+G VLGQHDDSGRKE
Subjt:  -----------FLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQHDDSGRKE

Query:  HTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HKVIKGSALADYLAQQP
          IYYLSKKFTDCETRYSQVEK   C +LA+   +    +LY+          + +  + P                       K IKGSALADYLAQQP
Subjt:  HTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HKVIKGSALADYLAQQP

Query:  INNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQATIDMK-----------
        IN+Y+PVKFDFPDEYIS ITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARL FDCT+NMA+YEACSMGVQA +DMK           
Subjt:  INNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQATIDMK-----------

Query:  ----------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEEPDGNPWFHDIKQYIKS
                                                 NNQV DALATL VMFNLELNEDVR IKV RRDV  SC+S EEEPDGNPWFHDIKQYIKS
Subjt:  ----------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEEPDGNPWFHDIKQYIKS

Query:  KEYPPNASENDKRTLRKLEMKFFL
        KEYPPNASENDKRTLRKL MKFFL
Subjt:  KEYPPNASENDKRTLRKLEMKFFL

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]2.0e-14846.58Show/hide
Query:  EELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK-------------------------------
        + +TE  +LGSQAE KE++IG +MSSESRKKLIELLHEY DVF  SYQDMPGLDT+IVVHKL IN EFK                               
Subjt:  EELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK-------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------------------------------------------------------QKE
                                                                                                         QKE
Subjt:  -------------------------------------------------------------------------------------------------QKE

Query:  VRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQHDDSGRKEHTIYYLSK
        VR FLG+LNYIARFISHLTAT EPIFKLLRKNNDGVWSEDC+AAF+KIKQYLQDPPILVPPTPGRPLILYLTV ENSMG VLGQHDDSGRKE  IYYLSK
Subjt:  VRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQHDDSGRKEHTIYYLSK

Query:  KFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HKVIKGSALADYLAQQPINNYVPVK
        KFTDCETRYSQVEK   C +LA+   +    +LY+          + +  + P                       K IKGSALADYLAQQPIN+Y+PVK
Subjt:  KFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HKVIKGSALADYLAQQPINNYVPVK

Query:  FDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQATIDMK-------------------
        FDFPDEYIS ITASEESLDPQTWTMMFDGASNELGH IGAILISPKGELYPLT +L FDCT+NMA+YEACSMGVQA IDMK                   
Subjt:  FDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQATIDMK-------------------

Query:  ---------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEEPDGNPWFHDIKQYIKSKEYPPNA
                                          NNQV DALATL VMFNLELNEDVR IKV RRDVP SC+S EEEPDGNPWFHDIKQYIKSKEY PNA
Subjt:  ---------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEEPDGNPWFHDIKQYIKSKEYPPNA

Query:  SENDKRTLRKLEMKFFL
        SENDKRTLRKL MKFFL
Subjt:  SENDKRTLRKLEMKFFL

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.7e-14764.43Show/hide
Query:  FTLSYQDMPGLDTNIVVHKLPINLEFKQKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILY
        F +S +D+  +D + V   L +     QKEVR FLG+LNYIAR ISHLTAT EPIFKLLRKNNDGVWSEDC+AAFDKIKQYLQDPPILVPPTPGRPLILY
Subjt:  FTLSYQDMPGLDTNIVVHKLPINLEFKQKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILY

Query:  LTVIENSMGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP-----------------
        LTV ENSMG VLGQHDDSGRKE  IYYLSKKFTDCETRYSQVEK   C +LA+ T +    +LY+          + +  + P                 
Subjt:  LTVIENSMGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP-----------------

Query:  -----HKVIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEAC
              K IKGSALADYLAQQPIN+Y+PVKFDFPDEYIS ITASEESLDPQTWTMMFDGASNELGHGIG ILISPKGELYPLTARL FDCT+NMA+YEAC
Subjt:  -----HKVIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEAC

Query:  SMGVQATIDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVS
        SMGVQA +DMK                                                     NNQV DALATL VMFNLELNEDV  IKV RRDVP S
Subjt:  SMGVQATIDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVS

Query:  CISTEEEPDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL
        C+S EEEPDGNPWFH+IK YIKSKEYPPNASENDKRTLRKL MKFFL
Subjt:  CISTEEEPDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H4.2e-16047.97Show/hide
Query:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------
        +DDEPSAELLRMLEEEEKMLG HEELTET+NLGSQAE KE++IG +MSSESRKKLIELLHEY DVF  SYQDMPGLDT+IVVHKL IN +FK        
Subjt:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------QKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENS
                            QK+VR FLG+LNYIARFISHLTAT EPIFKLLRKNNDGVWSE+C+AA DKIKQYL DPPILVPPTPGRP ILYL V ENS
Subjt:  --------------------QKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENS

Query:  MGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYHMAHF--KDGP------------------------------HK
        MG VLGQHDDSGRKE  IYYLSKKFTDCETRYSQVEK   C +LA+   +    +LY+      K  P                               K
Subjt:  MGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYHMAHF--KDGP------------------------------HK

Query:  VIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQAT
         IKGSALADYLAQQPIN+Y+PVKFDFPDEYIS ITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARL FDCT+NMA+YEACSMGVQA 
Subjt:  VIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQAT

Query:  IDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEE
        +DMK                                                     NNQV DALATL VMFNLELNEDV  IKV RRDVP SC+S EEE
Subjt:  IDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEE

Query:  PDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL
        PDGNPWFHDIKQYI SKEYPPNASENDKRT RKL MKFFL
Subjt:  PDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL

A0A6J1D099 Ribonuclease H2.5e-16048.11Show/hide
Query:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------
        +DDEPSAELLRMLEEEEKMLG HEELTET+NLGSQAE KE++IG +MSSESRKKLIELLHEY DVF  SY DM GLDT+IVVHKLPIN EFK        
Subjt:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------QKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENS
                            QKEVR FLG+LNYIARFISHLTAT EPIFKLLRKNNDGV SEDC+AAFDK+KQYLQDPP+LVPPTPGR LILYLTV ENS
Subjt:  --------------------QKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENS

Query:  MGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HK
        MG VLGQHDDSGRKE  IYYLSKKFTDCETRYSQVEK   C +LA+   +    +LY+          + +  + P                       K
Subjt:  MGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HK

Query:  VIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQAT
         IKGSALADYLAQQPIN+Y+PVKFDFPDEYIS ITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPL ARL FDC +NMA+YEACSMGVQA 
Subjt:  VIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQAT

Query:  IDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEE
        IDMK                                                     NNQV DALATL VMFNLELNEDVR IKV RRDVP SC+S EEE
Subjt:  IDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEE

Query:  PDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL
        PDG PWFHDIKQYIKSKEYPPNASENDKRTLRKL +KFFL
Subjt:  PDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL

A0A6J1D7C7 Ribonuclease H8.2e-16449.31Show/hide
Query:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------
        +DDEPSAELLRMLEEEEKMLG HEELTET+NLGSQAE KE++IG +MSSESRKKLIELLHEY DVF  SYQDMPGLDT+IVVHKLP N +FK        
Subjt:  MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK--------

Query:  ---------QKEVRR-------------------------------------------------------------------------------------
                 + EVR+                                                                                     
Subjt:  ---------QKEVRR-------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------FLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQHDDSGRKE
                   FLG+LNYIARFISHLTAT EPIFKLL KNNDGVWSEDC+A+FDKIKQYLQDPPILVPPTPGRPLILYLTV ENS+G VLGQHDDSGRKE
Subjt:  -----------FLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQHDDSGRKE

Query:  HTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HKVIKGSALADYLAQQP
          IYYLSKKFTDCETRYSQVEK   C +LA+   +    +LY+          + +  + P                       K IKGSALADYLAQQP
Subjt:  HTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HKVIKGSALADYLAQQP

Query:  INNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQATIDMK-----------
        IN+Y+PVKFDFPDEYIS ITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARL FDCT+NMA+YEACSMGVQA +DMK           
Subjt:  INNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQATIDMK-----------

Query:  ----------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEEPDGNPWFHDIKQYIKS
                                                 NNQV DALATL VMFNLELNEDVR IKV RRDV  SC+S EEEPDGNPWFHDIKQYIKS
Subjt:  ----------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEEPDGNPWFHDIKQYIKS

Query:  KEYPPNASENDKRTLRKLEMKFFL
        KEYPPNASENDKRTLRKL MKFFL
Subjt:  KEYPPNASENDKRTLRKLEMKFFL

A0A6J1DZ90 Ribonuclease H9.7e-14946.58Show/hide
Query:  EELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK-------------------------------
        + +TE  +LGSQAE KE++IG +MSSESRKKLIELLHEY DVF  SYQDMPGLDT+IVVHKL IN EFK                               
Subjt:  EELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFK-------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------------------------------------------------------------------------QKE
                                                                                                         QKE
Subjt:  -------------------------------------------------------------------------------------------------QKE

Query:  VRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQHDDSGRKEHTIYYLSK
        VR FLG+LNYIARFISHLTAT EPIFKLLRKNNDGVWSEDC+AAF+KIKQYLQDPPILVPPTPGRPLILYLTV ENSMG VLGQHDDSGRKE  IYYLSK
Subjt:  VRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQHDDSGRKEHTIYYLSK

Query:  KFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HKVIKGSALADYLAQQPINNYVPVK
        KFTDCETRYSQVEK   C +LA+   +    +LY+          + +  + P                       K IKGSALADYLAQQPIN+Y+PVK
Subjt:  KFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP----------------------HKVIKGSALADYLAQQPINNYVPVK

Query:  FDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQATIDMK-------------------
        FDFPDEYIS ITASEESLDPQTWTMMFDGASNELGH IGAILISPKGELYPLT +L FDCT+NMA+YEACSMGVQA IDMK                   
Subjt:  FDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEACSMGVQATIDMK-------------------

Query:  ---------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEEPDGNPWFHDIKQYIKSKEYPPNA
                                          NNQV DALATL VMFNLELNEDVR IKV RRDVP SC+S EEEPDGNPWFHDIKQYIKSKEY PNA
Subjt:  ---------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEEPDGNPWFHDIKQYIKSKEYPPNA

Query:  SENDKRTLRKLEMKFFL
        SENDKRTLRKL MKFFL
Subjt:  SENDKRTLRKLEMKFFL

A0A6J1E2J7 Ribonuclease H8.2e-14864.43Show/hide
Query:  FTLSYQDMPGLDTNIVVHKLPINLEFKQKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILY
        F +S +D+  +D + V   L +     QKEVR FLG+LNYIAR ISHLTAT EPIFKLLRKNNDGVWSEDC+AAFDKIKQYLQDPPILVPPTPGRPLILY
Subjt:  FTLSYQDMPGLDTNIVVHKLPINLEFKQKEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILY

Query:  LTVIENSMGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP-----------------
        LTV ENSMG VLGQHDDSGRKE  IYYLSKKFTDCETRYSQVEK   C +LA+ T +    +LY+          + +  + P                 
Subjt:  LTVIENSMGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPTSKTIYVVLYH----------MAHFKDGP-----------------

Query:  -----HKVIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEAC
              K IKGSALADYLAQQPIN+Y+PVKFDFPDEYIS ITASEESLDPQTWTMMFDGASNELGHGIG ILISPKGELYPLTARL FDCT+NMA+YEAC
Subjt:  -----HKVIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKYEAC

Query:  SMGVQATIDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVS
        SMGVQA +DMK                                                     NNQV DALATL VMFNLELNEDV  IKV RRDVP S
Subjt:  SMGVQATIDMK----------------------------------------------------RNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVS

Query:  CISTEEEPDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL
        C+S EEEPDGNPWFH+IK YIKSKEYPPNASENDKRTLRKL MKFFL
Subjt:  CISTEEEPDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFL

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein4.5e-1032.56Show/hide
Query:  LEFKQ----KEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQ-HDDS
        L++KQ    KE+R+FLG +NY+ +FI   +    P+  LL+K+    W+     A + IKQ L  PP+L      + ++L     + ++G VL Q HDD 
Subjt:  LEFKQ----KEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQ-HDDS

Query:  GRKEHTIYYLSKKFTDCETRYSQVEKNLL
          K + + Y S K +  +  YS  +K +L
Subjt:  GRKEHTIYYLSKKFTDCETRYSQVEKNLL

P0CT35 Transposon Tf2-2 polyprotein4.5e-1032.56Show/hide
Query:  LEFKQ----KEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQ-HDDS
        L++KQ    KE+R+FLG +NY+ +FI   +    P+  LL+K+    W+     A + IKQ L  PP+L      + ++L     + ++G VL Q HDD 
Subjt:  LEFKQ----KEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQ-HDDS

Query:  GRKEHTIYYLSKKFTDCETRYSQVEKNLL
          K + + Y S K +  +  YS  +K +L
Subjt:  GRKEHTIYYLSKKFTDCETRYSQVEKNLL

P0CT36 Transposon Tf2-3 polyprotein4.5e-1032.56Show/hide
Query:  LEFKQ----KEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQ-HDDS
        L++KQ    KE+R+FLG +NY+ +FI   +    P+  LL+K+    W+     A + IKQ L  PP+L      + ++L     + ++G VL Q HDD 
Subjt:  LEFKQ----KEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQ-HDDS

Query:  GRKEHTIYYLSKKFTDCETRYSQVEKNLL
          K + + Y S K +  +  YS  +K +L
Subjt:  GRKEHTIYYLSKKFTDCETRYSQVEKNLL

P0CT41 Transposon Tf2-12 polyprotein4.5e-1032.56Show/hide
Query:  LEFKQ----KEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQ-HDDS
        L++KQ    KE+R+FLG +NY+ +FI   +    P+  LL+K+    W+     A + IKQ L  PP+L      + ++L     + ++G VL Q HDD 
Subjt:  LEFKQ----KEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQ-HDDS

Query:  GRKEHTIYYLSKKFTDCETRYSQVEKNLL
          K + + Y S K +  +  YS  +K +L
Subjt:  GRKEHTIYYLSKKFTDCETRYSQVEKNLL

Q9UR07 Transposon Tf2-11 polyprotein4.5e-1032.56Show/hide
Query:  LEFKQ----KEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQ-HDDS
        L++KQ    KE+R+FLG +NY+ +FI   +    P+  LL+K+    W+     A + IKQ L  PP+L      + ++L     + ++G VL Q HDD 
Subjt:  LEFKQ----KEVRRFLGQLNYIARFISHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQ-HDDS

Query:  GRKEHTIYYLSKKFTDCETRYSQVEKNLL
          K + + Y S K +  +  YS  +K +L
Subjt:  GRKEHTIYYLSKKFTDCETRYSQVEKNLL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATGAGCCCTCTGCTGAGTTATTAAGAATGCTAGAAGAAGAAGAAAAGATGTTGGGATCCCATGAGGAATTAACCGAGACAGTTAACTTGGGTTCACAAGCGGA
GGATAAAGAGGTTCAAATAGGCATTAATATGTCTTCAGAGAGTCGCAAAAAGTTGATAGAGTTACTTCATGAATATGTTGATGTTTTTACTTTGTCCTATCAAGATATGC
CTGGTTTAGATACAAACATTGTAGTGCACAAATTGCCAATCAACCTAGAGTTCAAGCAGAAAGAAGTTAGAAGGTTCCTAGGACAACTCAATTACATCGCAAGGTTCATA
TCTCACTTAACAGCAACTTACGAACCCATCTTTAAATTGCTCCGCAAGAACAATGATGGGGTATGGAGTGAAGATTGTGAAGCAGCATTTGATAAGATTAAGCAATATTT
GCAGGACCCTCCAATTCTTGTGCCACCAACTCCAGGACGACCCCTTATTTTATATCTCACAGTGATTGAAAACTCAATGGGATATGTACTGGGGCAGCATGATGACTCGG
GTAGAAAAGAACATACCATATATTATTTGAGTAAGAAGTTTACCGATTGCGAGACTAGATACTCTCAAGTAGAAAAAAACTTGTTGTGCTCCAGCTTGGCCTACCCGACA
TCTAAGACAATATATGTTGTATTATACCACATGGCTCATTTCAAAGATGGACCTCATAAAGTCATTAAGGGGAGTGCTTTGGCCGACTACCTAGCTCAACAACCTATAAA
TAACTATGTACCGGTGAAGTTCGACTTTCCAGATGAGTATATCTCCATCATAACCGCAAGTGAGGAAAGTTTAGACCCACAAACTTGGACCATGATGTTTGATGGTGCCT
CTAACGAGTTAGGTCATGGGATAGGGGCTATTTTGATATCACCCAAAGGGGAACTATACCCTCTTACCGCCAGATTACGTTTTGACTGCACATATAATATGGCCAAGTAT
GAAGCATGCTCGATGGGTGTCCAAGCTACTATTGATATGAAGAGAAATAATCAAGTAGTAGATGCATTAGCCACATTAACAGTGATGTTCAATTTAGAACTCAATGAGGA
TGTCCGTCTGATTAAAGTTAGAAGGAGAGATGTCCCAGTTTCTTGTATCAGCACTGAGGAAGAACCTGACGGTAACCCCTGGTTTCATGACATCAAGCAATATATCAAGA
GTAAAGAATATCCACCAAATGCTTCAGAAAATGATAAGCGCACCCTCCGCAAGTTGGAAATGAAGTTTTTCTTAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGATGAGCCCTCTGCTGAGTTATTAAGAATGCTAGAAGAAGAAGAAAAGATGTTGGGATCCCATGAGGAATTAACCGAGACAGTTAACTTGGGTTCACAAGCGGA
GGATAAAGAGGTTCAAATAGGCATTAATATGTCTTCAGAGAGTCGCAAAAAGTTGATAGAGTTACTTCATGAATATGTTGATGTTTTTACTTTGTCCTATCAAGATATGC
CTGGTTTAGATACAAACATTGTAGTGCACAAATTGCCAATCAACCTAGAGTTCAAGCAGAAAGAAGTTAGAAGGTTCCTAGGACAACTCAATTACATCGCAAGGTTCATA
TCTCACTTAACAGCAACTTACGAACCCATCTTTAAATTGCTCCGCAAGAACAATGATGGGGTATGGAGTGAAGATTGTGAAGCAGCATTTGATAAGATTAAGCAATATTT
GCAGGACCCTCCAATTCTTGTGCCACCAACTCCAGGACGACCCCTTATTTTATATCTCACAGTGATTGAAAACTCAATGGGATATGTACTGGGGCAGCATGATGACTCGG
GTAGAAAAGAACATACCATATATTATTTGAGTAAGAAGTTTACCGATTGCGAGACTAGATACTCTCAAGTAGAAAAAAACTTGTTGTGCTCCAGCTTGGCCTACCCGACA
TCTAAGACAATATATGTTGTATTATACCACATGGCTCATTTCAAAGATGGACCTCATAAAGTCATTAAGGGGAGTGCTTTGGCCGACTACCTAGCTCAACAACCTATAAA
TAACTATGTACCGGTGAAGTTCGACTTTCCAGATGAGTATATCTCCATCATAACCGCAAGTGAGGAAAGTTTAGACCCACAAACTTGGACCATGATGTTTGATGGTGCCT
CTAACGAGTTAGGTCATGGGATAGGGGCTATTTTGATATCACCCAAAGGGGAACTATACCCTCTTACCGCCAGATTACGTTTTGACTGCACATATAATATGGCCAAGTAT
GAAGCATGCTCGATGGGTGTCCAAGCTACTATTGATATGAAGAGAAATAATCAAGTAGTAGATGCATTAGCCACATTAACAGTGATGTTCAATTTAGAACTCAATGAGGA
TGTCCGTCTGATTAAAGTTAGAAGGAGAGATGTCCCAGTTTCTTGTATCAGCACTGAGGAAGAACCTGACGGTAACCCCTGGTTTCATGACATCAAGCAATATATCAAGA
GTAAAGAATATCCACCAAATGCTTCAGAAAATGATAAGCGCACCCTCCGCAAGTTGGAAATGAAGTTTTTCTTAAAATGA
Protein sequenceShow/hide protein sequence
MDDEPSAELLRMLEEEEKMLGSHEELTETVNLGSQAEDKEVQIGINMSSESRKKLIELLHEYVDVFTLSYQDMPGLDTNIVVHKLPINLEFKQKEVRRFLGQLNYIARFI
SHLTATYEPIFKLLRKNNDGVWSEDCEAAFDKIKQYLQDPPILVPPTPGRPLILYLTVIENSMGYVLGQHDDSGRKEHTIYYLSKKFTDCETRYSQVEKNLLCSSLAYPT
SKTIYVVLYHMAHFKDGPHKVIKGSALADYLAQQPINNYVPVKFDFPDEYISIITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLRFDCTYNMAKY
EACSMGVQATIDMKRNNQVVDALATLTVMFNLELNEDVRLIKVRRRDVPVSCISTEEEPDGNPWFHDIKQYIKSKEYPPNASENDKRTLRKLEMKFFLK