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Moc08g17370 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g17370
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr8:13199669..13200912
RNA-Seq ExpressionMoc08g17370
SyntenyMoc08g17370
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY92947.1 hypothetical protein Acr_08g0013430 [Actinidia rufa]1.0e-3444.17Show/hide
Query:  SWMDPIVDFIR-GNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG--LVEHY---------EP----------------------TTN
        +W+D I+D++R G  P+D  + R+L  R+ARF + +G LY+R FS PLLRCL PEE   + E Y         EP                        N
Subjt:  SWMDPIVDFIR-GNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG--LVEHY---------EP----------------------TTN

Query:  EEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYPWNAE
        E EL LNLDLL+E+R  A+LR A Y+GR+A++YN RV  R+F  G LV RRV         G L P WEGP+++  + RPGT  L DL G  L++PWNAE
Subjt:  EEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYPWNAE

Query:  HLKRYY
        HLK+YY
Subjt:  HLKRYY

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]5.7e-3370Show/hide
Query:  VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYP
        VE+YE   NEEELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFE+KGIVRPGTY+LADL+G +L++P
Subjt:  VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYP

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]1.8e-0753.7Show/hide
Query:  MDPIVDFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG
        MDPI DF+ G    D KE +++AR+ AR+++R+G LYR GFSLPLL+C+  E+G
Subjt:  MDPIVDFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG

XP_022156070.1 uncharacterized protein K02A2.6-like [Momordica charantia]1.7e-3235.43Show/hide
Query:  MEIGAPESSWMDPIVDF-IRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPE-----------------------EGL-----------
        M++   + +WMD I +F + G+ P DP + RKL  ++A +++++  L++RG+SLPLLRCL PE                        GL           
Subjt:  MEIGAPESSWMDPIVDF-IRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPE-----------------------EGL-----------

Query:  --------------------------------------------VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHL
                                                    VE++   TN E LL+NLDLL E+R+ +QLRLAEY  RMA +YNARV+ R F+ G L
Subjt:  --------------------------------------------VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHL

Query:  VLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYPWNAEHLKRYY
        VL++V  HV AL P WEGP+ +  I+RP  Y+   L G  L +PWNAEHL+ YY
Subjt:  VLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYPWNAEHLKRYY

XP_022159003.1 uncharacterized protein LOC111025448 [Momordica charantia]1.4e-3972.07Show/hide
Query:  VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYP
        +E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FE+KGIVRPGTY+LADL+  VLA+P
Subjt:  VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYP

Query:  WNAEHLKRYYP
        WNAEHLKRYYP
Subjt:  WNAEHLKRYYP

XP_023876159.1 uncharacterized protein LOC111988600 [Quercus suber]5.9e-3041.94Show/hide
Query:  ESSWMDPIVDFIR-GNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG---LVEHYEPTTNE--------EELLLNLDLLEERRAMAQL
        E +WM PIV +++ G  P+   E RKL  R+AR+++ D  LY+RGFS P LRCL P+E    L E +E              ++ LNLDL++E R  A+ 
Subjt:  ESSWMDPIVDFIR-GNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG---LVEHYEPTTNE--------EELLLNLDLLEERRAMAQL

Query:  RLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHV-----GALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYPWNAEHLKRYY
        R+A Y+  MAR ++A V+PR F +G LVL++V           L P WEGP+ +    RPG+Y L  L    L +PWN EHL+RYY
Subjt:  RLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHV-----GALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYPWNAEHLKRYY

TrEMBL top hitse value%identityAlignment
A0A6J1DP99 uncharacterized protein K02A2.6-like2.8e-3370Show/hide
Query:  VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYP
        VE+YE   NEEELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFE+KGIVRPGTY+LADL+G +L++P
Subjt:  VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYP

A0A6J1DP99 uncharacterized protein K02A2.6-like8.9e-0853.7Show/hide
Query:  MDPIVDFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG
        MDPI DF+ G    D KE +++AR+ AR+++R+G LYR GFSLPLL+C+  E+G
Subjt:  MDPIVDFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG

A0A6J1DP99 uncharacterized protein K02A2.6-like8.0e-3335.43Show/hide
Query:  MEIGAPESSWMDPIVDF-IRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPE-----------------------EGL-----------
        M++   + +WMD I +F + G+ P DP + RKL  ++A +++++  L++RG+SLPLLRCL PE                        GL           
Subjt:  MEIGAPESSWMDPIVDF-IRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPE-----------------------EGL-----------

Query:  --------------------------------------------VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHL
                                                    VE++   TN E LL+NLDLL E+R+ +QLRLAEY  RMA +YNARV+ R F+ G L
Subjt:  --------------------------------------------VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHL

Query:  VLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYPWNAEHLKRYY
        VL++V  HV AL P WEGP+ +  I+RP  Y+   L G  L +PWNAEHL+ YY
Subjt:  VLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYPWNAEHLKRYY

A0A6J1DWM2 Ribonuclease H3.7e-3059.09Show/hide
Query:  VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYP
        VE+++   N E LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ R F+   LVL++V  HVGAL+P WEGP+ +  I+RP  Y+L+DL G  L +P
Subjt:  VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYP

Query:  WNAEHLKRYY
        WNAEHL+ YY
Subjt:  WNAEHLKRYY

A0A6J1DWM2 Ribonuclease H1.3e-1154.69Show/hide
Query:  MEIGAPESSWMDPIVDF-IRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEE
        MEI + + +WMDPI DF + G+ P DP + RKL R+AA +++++G L++RG+SLPLLRCL PEE
Subjt:  MEIGAPESSWMDPIVDF-IRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEE

A0A6J1DXL9 uncharacterized protein LOC1110254486.8e-4072.07Show/hide
Query:  VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYP
        +E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FE+KGIVRPGTY+LADL+  VLA+P
Subjt:  VEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYP

Query:  WNAEHLKRYYP
        WNAEHLKRYYP
Subjt:  WNAEHLKRYYP

A0A7J0F4U0 Uncharacterized protein5.0e-3544.17Show/hide
Query:  SWMDPIVDFIR-GNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG--LVEHY---------EP----------------------TTN
        +W+D I+D++R G  P+D  + R+L  R+ARF + +G LY+R FS PLLRCL PEE   + E Y         EP                        N
Subjt:  SWMDPIVDFIR-GNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEG--LVEHY---------EP----------------------TTN

Query:  EEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYPWNAE
        E EL LNLDLL+E+R  A+LR A Y+GR+A++YN RV  R+F  G LV RRV         G L P WEGP+++  + RPGT  L DL G  L++PWNAE
Subjt:  EEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRV-----QTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYPWNAE

Query:  HLKRYY
        HLK+YY
Subjt:  HLKRYY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATCGGCGCTCCAGAATCCTCATGGATGGACCCGATCGTGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCGCAGAAAATTGGCAAGGCGG
GCAGCTCGGTTCGTGGTCCGAGATGGGGCATTGTACCGACGTGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGCCTAGTAGAGCATTACGAG
CCTACGACAAATGAGGAAGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGA
CATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGAAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCA
TTTGAGATCAAGGGCATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGTACCCGTGGAACGCGGAGCACCTGAAGCGTTATTAT
CCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATCGGCGCTCCAGAATCCTCATGGATGGACCCGATCGTGGACTTCATTAGGGGCAACTCACCACAAGACCCCAAGGAGCGCAGAAAATTGGCAAGGCGG
GCAGCTCGGTTCGTGGTCCGAGATGGGGCATTGTACCGACGTGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGCCTAGTAGAGCATTACGAG
CCTACGACAAATGAGGAAGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGA
CATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGAAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAGGGCCCA
TTTGAGATCAAGGGCATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGTACCCGTGGAACGCGGAGCACCTGAAGCGTTATTAT
CCTTGA
Protein sequenceShow/hide protein sequence
MEIGAPESSWMDPIVDFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLTPEEGLVEHYEPTTNEEELLLNLDLLEERRAMAQLRLAEYQGRMAR
HYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEIKGIVRPGTYILADLKGDVLAYPWNAEHLKRYYP