; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g17480 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g17480
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr8:13263824..13264671
RNA-Seq ExpressionMoc08g17480
SyntenyMoc08g17480
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045440.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.3e-8665.1Show/hide
Query:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ
        M+T+  T + +MAE++KK+  LMK VEERDYEIA LKN IE+ D AESS    +K  DKGK + QE Q +  TSIASL VQQLQ+MIT++I+ QYGG +Q
Subjt:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ

Query:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIPNNILLTSSK----LPETIESWEQLEREFLNRFYSTKRTVSIMELTNSKQRKGEPVVEYINRWRA
        +  LY K Y+KRI++LRM  GYQP  F   M +A  NN+LLTSSK    LPE+I++WEQLER+FLNRFYST+R +S+MELTN++Q+KGE V++YINRWRA
Subjt:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIPNNILLTSSK----LPETIESWEQLEREFLNRFYSTKRTVSIMELTNSKQRKGEPVVEYINRWRA

Query:  LSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR
        LSLDCKDRLTELSAVE+CTQGMHW LLYILQG+KPRTF+ELATR+HDMEL++ N+
Subjt:  LSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.1e-8561.48Show/hide
Query:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQ-SQYSTSIASLFVQQLQDMITNTIRAQYGGPS
        MM D + ++  MAEM++K+  LMK V+ERD+EIA+LK Q++ R+ AESSQT  +K++DKGK + QENQ  Q STS+ASL VQQLQDMITN+IRAQYGGPS
Subjt:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQ-SQYSTSIASLFVQQLQDMITNTIRAQYGGPS

Query:  QSSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP-------------------------------NNILLTSSKLPETIESWEQLEREFLNRFYSTK
        Q+S +Y K Y+KRI++LRM  GYQP  F    G+  P                               N     +   PE+IESWEQLE+EFLNRFYST+
Subjt:  QSSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP-------------------------------NNILLTSSKLPETIESWEQLEREFLNRFYSTK

Query:  RTVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR
        RTVS+MELTN+KQRKGEPV++YINRWRALSLDCKDRLTELSAVE+CTQGMHW LLYILQG+KPRTFEELATR+HDMELSI +R
Subjt:  RTVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]4.1e-8561.13Show/hide
Query:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQ-SQYSTSIASLFVQQLQDMITNTIRAQYGGPS
        MM D + ++  MAEM++K+  LMK V+ERD+EIA+LK Q++ R+ AESSQT  +K++DKGK + QENQ  Q STS+ASL VQQLQDMIT++IRAQYGGPS
Subjt:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQ-SQYSTSIASLFVQQLQDMITNTIRAQYGGPS

Query:  QSSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP-------------------------------NNILLTSSKLPETIESWEQLEREFLNRFYSTK
        Q+S +Y K Y+KRI++LRM  GYQP  F    G+  P                               N     +   PE+IESWEQLE+EFLNRFYST+
Subjt:  QSSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP-------------------------------NNILLTSSKLPETIESWEQLEREFLNRFYSTK

Query:  RTVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR
        RTVS+MELTN+KQRKGEPV++YINRWRALSLDCKDRLTELSAVE+CTQGMHW LLYILQG+KPRTFEELATR+HDMELSI +R
Subjt:  RTVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]4.1e-8561.13Show/hide
Query:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQ-SQYSTSIASLFVQQLQDMITNTIRAQYGGPS
        MM D + ++  MAEM++K+  LMK V+ERD+EIA+LK Q++ R+ AESSQT  +K++DKGK + QENQ  Q STS+ASL VQQLQDMIT++IRAQYGGPS
Subjt:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQ-SQYSTSIASLFVQQLQDMITNTIRAQYGGPS

Query:  QSSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP-------------------------------NNILLTSSKLPETIESWEQLEREFLNRFYSTK
        Q+S +Y K Y+KRI++LRM  GYQP  F    G+  P                               N     +   PE+IESWEQLE+EFLNRFYST+
Subjt:  QSSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP-------------------------------NNILLTSSKLPETIESWEQLEREFLNRFYSTK

Query:  RTVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR
        RTVS+MELTN+KQRKGEPV++YINRWRALSLDCKDRLTELSAVE+CTQGMHW LLYILQG+KPRTFEELATR+HDMELSI +R
Subjt:  RTVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.1e-8561.48Show/hide
Query:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQ-SQYSTSIASLFVQQLQDMITNTIRAQYGGPS
        MM D + ++  MAEM++K+  LMK V+ERD+EIA+LK Q++ R+ AESSQT  +K++DKGK + QENQ  Q STS+ASL VQQLQDMITN+IRAQYGGPS
Subjt:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQ-SQYSTSIASLFVQQLQDMITNTIRAQYGGPS

Query:  QSSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP-------------------------------NNILLTSSKLPETIESWEQLEREFLNRFYSTK
        Q+S +Y K Y+KRI++LRM  GYQP  F    G+  P                               N     +   PE+IESWEQLE+EFLNRFYST+
Subjt:  QSSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP-------------------------------NNILLTSSKLPETIESWEQLEREFLNRFYSTK

Query:  RTVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR
        RTVS+MELTN+KQRKGEPV++YINRWRALSLDCKDRLTELSAVE+CTQGMHW LLYILQG+KPRTFEELATR+HDMELSI +R
Subjt:  RTVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR

TrEMBL top hitse value%identityAlignment
A0A5A7TQK6 Retrotransposon gag protein4.0e-8665.1Show/hide
Query:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ
        M+T+  T + +MAE++KK+  LMK VEERDYEIA LKN IE+ D AESS    +K  DKGK + QE Q +  TSIASL VQQLQ+MIT++I+ QYGG +Q
Subjt:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ

Query:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIPNNILLTSSK----LPETIESWEQLEREFLNRFYSTKRTVSIMELTNSKQRKGEPVVEYINRWRA
        +  LY K Y+KRI++LRM  GYQP  F   M +A  NN+LLTSSK    LPE+I++WEQLER+FLNRFYST+R +S+MELTN++Q+KGE V++YINRWRA
Subjt:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIPNNILLTSSK----LPETIESWEQLEREFLNRFYSTKRTVSIMELTNSKQRKGEPVVEYINRWRA

Query:  LSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR
        LSLDCKDRLTELSAVE+CTQGMHW LLYILQG+KPRTF+ELATR+HDMEL++ N+
Subjt:  LSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR

A0A5A7TST6 Ty3-gypsy retrotransposon protein9.2e-8359.93Show/hide
Query:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ
        M+T+  T + +MAE++KK+  LMK VEERDYEIA LKN IE+RD AESS    +K  DKGK + QE+Q Q STSIASL VQQLQ+MI ++I+ QYGGP+Q
Subjt:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ

Query:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIPNNILL----------TSSKL---------------------PETIESWEQLEREFLNRFYSTKR
        +  LY K Y+KRI++LRMS GYQP  F    G+  P   +           T   L                     PE+I++WEQLER+FLNRFYST+R
Subjt:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIPNNILL----------TSSKL---------------------PETIESWEQLEREFLNRFYSTKR

Query:  TVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR
         VS+MELTN++Q+KGE V++YINRWRALSLDCKDRLTELSAVE+CTQGMHW LLYILQG+KPRTFEELATR+HDMELSITNR
Subjt:  TVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR

A0A5A7TZU9 Ribonuclease H2.4e-8360.64Show/hide
Query:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ
        M+TD  T +++MAE++KK+  LMK VEERD+EIA LKN IE+RD AESS T  IK  +KGK I QE+Q Q STSIASL VQQLQ+MI N+I+ QYGGP+Q
Subjt:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ

Query:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIPNNILL----------TSSKL---------------------PETIESWEQLEREFLNRFYSTKR
        +  LY K Y+KRI+++RM  GYQP  F    G+  P   +           T   L                     PE+I+SWEQLER+FLNRFYST+R
Subjt:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIPNNILL----------TSSKL---------------------PETIESWEQLEREFLNRFYSTKR

Query:  TVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR
         VS++ELT +KQRKGEPV++YINRWRALSLDCKDRLTELSAVE+CTQGMHW LLYILQG+KPRTFEELATR+HDMELSI NR
Subjt:  TVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR

A0A5D3BX77 Retrotransposon gag protein7.8e-8259.22Show/hide
Query:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ
        M+T+  T + +MAE++KK+  LMK VEERDYEIA LKN IE+RD AESS    +K  DKGK + QE+Q Q STSIASL VQQLQ+MI ++I+ QYGGP+Q
Subjt:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ

Query:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP-------------------------------NNILLTSSKLPETIESWEQLEREFLNRFYSTKR
        +  LY K Y+KRI++LRM  GYQP  F    G+  P                               N   L     PE+I++WEQLER+FLNRFYST+R
Subjt:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP-------------------------------NNILLTSSKLPETIESWEQLEREFLNRFYSTKR

Query:  TVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR
         VS+MELTN++Q+KGE V++YINRWRALSLDCKDRLTELSAVE+CTQGMHW LLYILQG+KPRTFEELATR+HDMELSI NR
Subjt:  TVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR

A0A5D3C4W1 Ty3-gypsy retrotransposon protein5.4e-8359.57Show/hide
Query:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ
        M+TD  T + +M E++KK+  LMK VEERDYEIASLKN IE+RD AESS    +K  DKGK + QE+Q Q STSIASL VQQLQ+MI N+I+ QYGGP+Q
Subjt:  MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQ

Query:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP----------------NNILLTSSKL---------------PETIESWEQLEREFLNRFYSTKR
        +  LY KSY+KRI++LRM  GYQP  F    G+  P                   LL    +               PE+I++W+Q ER+FLNRFYST+R
Subjt:  SSLLYCKSYSKRINDLRMSAGYQPQNFSISMGRAIP----------------NNILLTSSKL---------------PETIESWEQLEREFLNRFYSTKR

Query:  TVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR
         VS+MELTN++Q+ GE V++YINRWRALSLDCKDRLTELSAVE+CTQGMHWELLYI QG+KPRTFEELATR+HDMELSITNR
Subjt:  TVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHWELLYILQGVKPRTFEELATRSHDMELSITNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGACTGATGCAAGCACTATGGATGAAAAAATGGCTGAAATGAAAAAGAAACTCGCTGCATTGATGAAGACAGTGGAAGAAAGAGATTATGAAATCGCTTCCTTGAA
GAATCAGATTGAAAACAGAGATGTTGCTGAGTCGAGTCAAACTCTTGCTATTAAGATAAATGACAAGGGAAAGACTATTGCTCAAGAAAATCAATCGCAATATTCCACTT
CGATAGCTTCGTTGTTCGTTCAGCAGCTCCAGGATATGATCACGAACACGATCAGAGCGCAATACGGCGGACCTTCTCAAAGCTCCCTCTTGTATTGTAAGTCATATTCT
AAGAGGATTAATGATCTGAGAATGTCTGCTGGATATCAACCCCAAAATTTCAGCATTTCGATGGGAAGGGCAATCCCAAACAACATATTGCTCACTTCATCGAAACTTCC
TGAAACGATCGAGAGTTGGGAACAGCTTGAAAGAGAATTCCTAAATCGCTTTTACAGTACGAAGAGAACCGTTAGCATAATGGAGCTCACGAACTCCAAACAAAGAAAAG
GCGAACCGGTTGTTGAATATATCAACCGATGGAGAGCTCTAAGTCTTGATTGCAAAGATAGGCTTACTGAACTATCCGCTGTCGAATTATGCACTCAAGGTATGCATTGG
GAACTTCTTTACATCCTTCAAGGTGTAAAACCTCGCACCTTTGAAGAGTTAGCAACTCGTTCTCACGATATGGAGCTAAGCATTACTAATCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGACTGATGCAAGCACTATGGATGAAAAAATGGCTGAAATGAAAAAGAAACTCGCTGCATTGATGAAGACAGTGGAAGAAAGAGATTATGAAATCGCTTCCTTGAA
GAATCAGATTGAAAACAGAGATGTTGCTGAGTCGAGTCAAACTCTTGCTATTAAGATAAATGACAAGGGAAAGACTATTGCTCAAGAAAATCAATCGCAATATTCCACTT
CGATAGCTTCGTTGTTCGTTCAGCAGCTCCAGGATATGATCACGAACACGATCAGAGCGCAATACGGCGGACCTTCTCAAAGCTCCCTCTTGTATTGTAAGTCATATTCT
AAGAGGATTAATGATCTGAGAATGTCTGCTGGATATCAACCCCAAAATTTCAGCATTTCGATGGGAAGGGCAATCCCAAACAACATATTGCTCACTTCATCGAAACTTCC
TGAAACGATCGAGAGTTGGGAACAGCTTGAAAGAGAATTCCTAAATCGCTTTTACAGTACGAAGAGAACCGTTAGCATAATGGAGCTCACGAACTCCAAACAAAGAAAAG
GCGAACCGGTTGTTGAATATATCAACCGATGGAGAGCTCTAAGTCTTGATTGCAAAGATAGGCTTACTGAACTATCCGCTGTCGAATTATGCACTCAAGGTATGCATTGG
GAACTTCTTTACATCCTTCAAGGTGTAAAACCTCGCACCTTTGAAGAGTTAGCAACTCGTTCTCACGATATGGAGCTAAGCATTACTAATCGATGA
Protein sequenceShow/hide protein sequence
MMTDASTMDEKMAEMKKKLAALMKTVEERDYEIASLKNQIENRDVAESSQTLAIKINDKGKTIAQENQSQYSTSIASLFVQQLQDMITNTIRAQYGGPSQSSLLYCKSYS
KRINDLRMSAGYQPQNFSISMGRAIPNNILLTSSKLPETIESWEQLEREFLNRFYSTKRTVSIMELTNSKQRKGEPVVEYINRWRALSLDCKDRLTELSAVELCTQGMHW
ELLYILQGVKPRTFEELATRSHDMELSITNR