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Moc08g18090 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g18090
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Genome locationchr8:13700293..13700889
RNA-Seq ExpressionMoc08g18090
SyntenyMoc08g18090
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_017235848.1 PREDICTED: uncharacterized protein LOC108209450 [Daucus carota subsp. sativus]1.1e-1133.53Show/hide
Query:  LSFMDIWLLLYDKLNPQQRD---LAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSC--RWLPPRDSAMKVNSD
        + F   WLL   KLN    D   L A   W IW  RN     + V    +  +W + YF ++  A+E++   P  S+    +   RW PP   A K+N+D
Subjt:  LSFMDIWLLLYDKLNPQQRD---LAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSC--RWLPPRDSAMKVNSD

Query:  AACR--STSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLV
        A  +    S  +GL++RDH G L++ K   L M  + L AE+  I E L   AS SY  + VESD   A++ +
Subjt:  AACR--STSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLV

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]6.0e-10898.99Show/hide
Query:  MFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRD
        MFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFT WAIWCDRNS AHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRD
Subjt:  MFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRD

Query:  SAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEELIGLWKFDR
        SAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEELIGLWKFDR
Subjt:  SAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEELIGLWKFDR

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.2e-3442.86Show/hide
Query:  MFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRD
        +FP L       N+SF+++W  L ++L P+  +LAA T W IW DRNSL HG  VS    +C W++ +  ++SQAQ +      QS+  P    W P   
Subjt:  MFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRD

Query:  SAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEE
         ++K+N+DAACR  ST  G IIRD    L+ A S+ +P PL+PL AEIR ILE LK AA+ ++T L VESD   AI+L++ ++ + G+E
Subjt:  SAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEE

XP_023897447.1 uncharacterized protein LOC112009345 [Quercus suber]8.7e-1432.64Show/hide
Query:  WAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVNSDAACRS--TSTGLGLIIRDHFGVLLVAKSMFL
        WA WC+RN + HG+   +P     W++ Y   YS A E+     ++ SV      W PP  S +KVN D A        G+G ++RD  G ++ A S  +
Subjt:  WAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVNSDAACRS--TSTGLGLIIRDHFGVLLVAKSMFL

Query:  PMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQG
        P PL PL  E++     L+LA    Y  +++E D    +R + G
Subjt:  PMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQG

XP_038722072.1 uncharacterized protein LOC120014227 [Tripterygium wilfordii]1.3e-1431.32Show/hide
Query:  SPINGNLSFMDIWL-LLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVN
        SP +GN S ++ WL  + ++ +  Q        W IW  RN + H +           ++++  +Y +AQ        + S PP   +W PP+ S +K+N
Subjt:  SPINGNLSFMDIWL-LLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVN

Query:  SDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGE
         DAA R +  G+G+I RD  G  + +K++ +P PLNPLFAE     EAL  A S +Y  +V+E D    I+ ++ +   + E
Subjt:  SDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGE

TrEMBL top hitse value%identityAlignment
A0A4Q3DBE2 Reverse transcriptase-like protein (Fragment)2.0e-1127.44Show/hide
Query:  DIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVNSDAACRST--S
        D  L   + L  +  +L     W +W  RN++  G S  +      W  S+ + Y  A   +  +  + +  P   RW PPRD  + +N DAA       
Subjt:  DIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVNSDAACRST--S

Query:  TGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLV
         G+G I+RDH G ++ ++++FL    +P  AE   +L+ ++L  S    R  ++SDC   +R++
Subjt:  TGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLV

A0A6J1BQ49 uncharacterized protein LOC1110047862.9e-10898.99Show/hide
Query:  MFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRD
        MFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFT WAIWCDRNS AHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRD
Subjt:  MFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRD

Query:  SAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEELIGLWKFDR
        SAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEELIGLWKFDR
Subjt:  SAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEELIGLWKFDR

A0A6J1DX30 uncharacterized protein LOC1110248745.6e-3542.86Show/hide
Query:  MFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRD
        +FP L       N+SF+++W  L ++L P+  +LAA T W IW DRNSL HG  VS    +C W++ +  ++SQAQ +      QS+  P    W P   
Subjt:  MFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRD

Query:  SAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEE
         ++K+N+DAACR  ST  G IIRD    L+ A S+ +P PL+PL AEIR ILE LK AA+ ++T L VESD   AI+L++ ++ + G+E
Subjt:  SAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEE

A0A803NT91 Uncharacterized protein9.7e-1128.9Show/hide
Query:  SFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPP--SCRWLPPRDSAMKVNSDAAC-
        SF+D + +++   + +Q+ L     WAIW  RN +       T A      + Y + +  AQ N RI    S +     +  W  P  + +KVN DAA  
Subjt:  SFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPP--SCRWLPPRDSAMKVNSDAAC-

Query:  -RSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDL
              G GL+ RDH+G+L+  K +     + P  AE  GI EAL    S ++  + +E+DC   +R ++ ++
Subjt:  -RSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDL

A0A803QNR5 Uncharacterized protein5.1e-1230.11Show/hide
Query:  GNLSFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQS--SVPPPSCRWLPPRDSAMKVNSDA
        G  +F+D  +  +   + ++R L     WAIW  RN        +T A   N  + + + +S+AQ N  I    S  S    + +W  P ++ +KVN DA
Subjt:  GNLSFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQS--SVPPPSCRWLPPRDSAMKVNSDA

Query:  ACRSTST--GLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDL
        A  ++S   G GL+ RDH G+L+  K++      +P  AE  GI EAL    S+ +    VE+DC  A++ ++  +
Subjt:  ACRSTST--GLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCCATCTCTCTTCACTTCTCCAATAAATGGAAATCTCAGTTTTATGGACATTTGGCTGCTTCTTTATGATAAACTAAATCCACAGCAGAGAGATCTTGCTGCTTT
TACCTATTGGGCAATTTGGTGTGATCGGAATTCTTTGGCCCATGGTTCTTCTGTCTCCACCCCTGCTTTAAGGTGCAATTGGATTAGTTCCTATTTTCAGAATTACTCAC
AGGCTCAAGAAAACAAGAGAATCTCACCGCAGCAGAGCTCGGTCCCTCCCCCATCCTGTCGTTGGCTTCCTCCTCGCGACTCAGCTATGAAGGTGAACTCTGATGCAGCC
TGCCGTTCTACATCAACAGGGCTAGGTCTTATTATCAGAGACCATTTTGGGGTTTTGTTGGTAGCGAAATCAATGTTTCTGCCAATGCCATTGAACCCTCTTTTTGCCGA
AATCAGAGGAATTTTGGAAGCTCTAAAGCTCGCTGCCTCACGGAGTTACACTCGCCTGGTTGTAGAATCTGATTGCCAAGAAGCCATTCGCCTCGTTCAAGGAGATCTGT
TTTCGATGGGAGAAGAATTAATTGGATTATGGAAATTCGATCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCCATCTCTCTTCACTTCTCCAATAAATGGAAATCTCAGTTTTATGGACATTTGGCTGCTTCTTTATGATAAACTAAATCCACAGCAGAGAGATCTTGCTGCTTT
TACCTATTGGGCAATTTGGTGTGATCGGAATTCTTTGGCCCATGGTTCTTCTGTCTCCACCCCTGCTTTAAGGTGCAATTGGATTAGTTCCTATTTTCAGAATTACTCAC
AGGCTCAAGAAAACAAGAGAATCTCACCGCAGCAGAGCTCGGTCCCTCCCCCATCCTGTCGTTGGCTTCCTCCTCGCGACTCAGCTATGAAGGTGAACTCTGATGCAGCC
TGCCGTTCTACATCAACAGGGCTAGGTCTTATTATCAGAGACCATTTTGGGGTTTTGTTGGTAGCGAAATCAATGTTTCTGCCAATGCCATTGAACCCTCTTTTTGCCGA
AATCAGAGGAATTTTGGAAGCTCTAAAGCTCGCTGCCTCACGGAGTTACACTCGCCTGGTTGTAGAATCTGATTGCCAAGAAGCCATTCGCCTCGTTCAAGGAGATCTGT
TTTCGATGGGAGAAGAATTAATTGGATTATGGAAATTCGATCGTTAG
Protein sequenceShow/hide protein sequence
MFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTYWAIWCDRNSLAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVNSDAA
CRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEELIGLWKFDR