; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g18190 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g18190
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr8:13772626..13772949
RNA-Seq ExpressionMoc08g18190
SyntenyMoc08g18190
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.7e-2763.21Show/hide
Query:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSL
        MS MVAAL+LN D NWY DSGAT HLTH+ +NLS+  EY  GNQ+Y  NG+GLPI+H+G  S NSS    + F L+NLL +P+ITKNLISVSQFAKDN +
Subjt:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSL

Query:  FLNFTP
        F  F P
Subjt:  FLNFTP

KAA0068024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.6e-2259.6Show/hide
Query:  LNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSLFLNFTP
        L  + D NWY DSGAT HLTH+ +NLS   EY  GNQ+Y  NG+GLPI+H+G  S NSS    + F L NLLH+P+ITKNLISVS FAKDN +F  F P
Subjt:  LNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSLFLNFTP

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.7e-2763.21Show/hide
Query:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSL
        MS MVAAL+LN D NWY DSGAT HLTH+ +NLS+  EY  GNQ+Y  NG+GLPI+H+G  S NSS    + F L+NLL +P+ITKNLISVSQFAKDN +
Subjt:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSL

Query:  FLNFTP
        F  F P
Subjt:  FLNFTP

XP_022147537.1 uncharacterized protein LOC111016442 [Momordica charantia]8.2e-2766.67Show/hide
Query:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINS-SNRLFHLSNLLHIPNITKNLISVSQFAKDNSLF
        MS ++  L+LN D NWY D GAT HLTHNFNNL V  EY   NQV VGNGA   I HFG+SS  S +NR+ HL+NLLH+P ITKNLISVSQFAKDNS+F
Subjt:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINS-SNRLFHLSNLLHIPNITKNLISVSQFAKDNSLF

XP_022156747.1 uncharacterized protein LOC111023586 [Momordica charantia]2.8e-1949.54Show/hide
Query:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFG------YSSINSSNRLFHLSNLLHIPNITKNLISVSQFAKD
        M  M+ A + N+D  WY DSGAT H+T++F N S+  +Y    ++ VGNG  L ISH G       S+ NSS  +FHL NLLH+P I KNLIS+S FAKD
Subjt:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFG------YSSINSSNRLFHLSNLLHIPNITKNLISVSQFAKD

Query:  NSLFLNFTP
        N +F  F P
Subjt:  NSLFLNFTP

TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-2763.21Show/hide
Query:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSL
        MS MVAAL+LN D NWY DSGAT HLTH+ +NLS+  EY  GNQ+Y  NG+GLPI+H+G  S NSS    + F L+NLL +P+ITKNLISVSQFAKDN +
Subjt:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSL

Query:  FLNFTP
        F  F P
Subjt:  FLNFTP

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-2763.21Show/hide
Query:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSL
        MS MVAAL+LN D NWY DSGAT HLTH+ +NLS+  EY  GNQ+Y  NG+GLPI+H+G  S NSS    + F L+NLL +P+ITKNLISVSQFAKDN +
Subjt:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSL

Query:  FLNFTP
        F  F P
Subjt:  FLNFTP

A0A5D3D3G2 Retrovirus-related Pol polyprotein from transposon TNT 1-947.8e-2359.6Show/hide
Query:  LNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSLFLNFTP
        L  + D NWY DSGAT HLTH+ +NLS   EY  GNQ+Y  NG+GLPI+H+G  S NSS    + F L NLLH+P+ITKNLISVS FAKDN +F  F P
Subjt:  LNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSN---RLFHLSNLLHIPNITKNLISVSQFAKDNSLFLNFTP

A0A6J1D2M1 uncharacterized protein LOC1110164424.0e-2766.67Show/hide
Query:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINS-SNRLFHLSNLLHIPNITKNLISVSQFAKDNSLF
        MS ++  L+LN D NWY D GAT HLTHNFNNL V  EY   NQV VGNGA   I HFG+SS  S +NR+ HL+NLLH+P ITKNLISVSQFAKDNS+F
Subjt:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINS-SNRLFHLSNLLHIPNITKNLISVSQFAKDNSLF

A0A6J1DSS1 uncharacterized protein LOC1110235861.4e-1949.54Show/hide
Query:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFG------YSSINSSNRLFHLSNLLHIPNITKNLISVSQFAKD
        M  M+ A + N+D  WY DSGAT H+T++F N S+  +Y    ++ VGNG  L ISH G       S+ NSS  +FHL NLLH+P I KNLIS+S FAKD
Subjt:  MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFG------YSSINSSNRLFHLSNLLHIPNITKNLISVSQFAKD

Query:  NSLFLNFTP
        N +F  F P
Subjt:  NSLFLNFTP

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.5e-1546.07Show/hide
Query:  NWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSNRLFHLSNLLHIPNITKNLISVSQFAKDNSLFLNFTP
        NW  DSGAT H+T +FNNLS+   Y  G+ V V +G+ +PISH G +S+++ +R  +L N+L++PNI KNLISV +    N + + F P
Subjt:  NWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSNRLFHLSNLLHIPNITKNLISVSQFAKDNSLFLNFTP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.9e-1443.82Show/hide
Query:  NWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSNRLFHLSNLLHIPNITKNLISVSQFAKDNSLFLNFTP
        NW  DSGAT H+T +FNNLS    Y  G+ V + +G+ +PI+H G +S+ +S+R   L+ +L++PNI KNLISV +    N + + F P
Subjt:  NWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSNRLFHLSNLLHIPNITKNLISVSQFAKDNSLFLNFTP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGAATGGTGGCTGCTTTGAATCTAAATCAAGATTGTAATTGGTATTCAGATTCTGGTGCCACGATTCATCTTACTCACAACTTCAACAATCTATCTGTTGAATT
TGAATATTTTTGTGGGAATCAGGTTTATGTAGGCAATGGTGCAGGTTTGCCTATTTCTCATTTTGGTTACTCTTCCATTAATTCTTCTAATCGTCTTTTTCACCTCAGTA
ATCTTCTTCACATCCCTAATATTACAAAGAATTTGATCAGCGTAAGCCAATTTGCCAAAGATAATAGTTTGTTTTTGAATTTCACCCCTTTGTTTGCTATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGAATGGTGGCTGCTTTGAATCTAAATCAAGATTGTAATTGGTATTCAGATTCTGGTGCCACGATTCATCTTACTCACAACTTCAACAATCTATCTGTTGAATT
TGAATATTTTTGTGGGAATCAGGTTTATGTAGGCAATGGTGCAGGTTTGCCTATTTCTCATTTTGGTTACTCTTCCATTAATTCTTCTAATCGTCTTTTTCACCTCAGTA
ATCTTCTTCACATCCCTAATATTACAAAGAATTTGATCAGCGTAAGCCAATTTGCCAAAGATAATAGTTTGTTTTTGAATTTCACCCCTTTGTTTGCTATGTGA
Protein sequenceShow/hide protein sequence
MSRMVAALNLNQDCNWYSDSGATIHLTHNFNNLSVEFEYFCGNQVYVGNGAGLPISHFGYSSINSSNRLFHLSNLLHIPNITKNLISVSQFAKDNSLFLNFTPLFAM