; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g18560 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g18560
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr8:14026256..14027864
RNA-Seq ExpressionMoc08g18560
SyntenyMoc08g18560
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8718649.1 hypothetical protein F3Y22_tig00110007pilonHSYRG00200 [Hibiscus syriacus]1.6e-0434.45Show/hide
Query:  VFNVTHQTRKDHHNSGYLRHTTPR--LPKFHGSRKPEEYLHW--------KRNRESQITSWRELKPLMRRQFVSKS-----LVKLKNLRQNDKNVEAYYE
        V  +T   R D H +     +T +  +P F G   PE YL W        +RN E  I++W E+K +MR++FV          KL+NL+Q + ++E Y++
Subjt:  VFNVTHQTRKDHHNSGYLRHTTPR--LPKFHGSRKPEEYLHW--------KRNRESQITSWRELKPLMRRQFVSKS-----LVKLKNLRQNDKNVEAYYE

Query:  EMCSLLEELNVYEDEESTM
        EM   +   NV ED E+TM
Subjt:  EMCSLLEELNVYEDEESTM

XP_022159097.1 uncharacterized protein LOC111025539 [Momordica charantia]1.9e-0536.79Show/hide
Query:  RKDHHNSGYLRHTTPRLPKFHGSRKPEEYLHWKRNRE-----SQITSWRELKPLMRRQFVSKSLV-----KLKNLRQNDKNVEAYYEEMCSLLEELNVYE
        R+D+H      +   + PKFHG+   E+YL W++  E     + +T   E K LMRR+F+    +     KL+ LRQ +K+VE YY++M +L+E +++ E
Subjt:  RKDHHNSGYLRHTTPRLPKFHGSRKPEEYLHWKRNRE-----SQITSWRELKPLMRRQFVSKSLV-----KLKNLRQNDKNVEAYYEEMCSLLEELNVYE

Query:  DEESTM
        +EE+TM
Subjt:  DEESTM

XP_023542108.1 glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo]2.5e-0537.37Show/hide
Query:  RLPKFHGSRKPEEYL-------------HWKRNRESQITSWRELKPLMRRQFVSKSL-----VKLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM
        ++P F+    P EYL              W+RN E  I +W ELK LMR++++ K        KL  L+Q  K+VE YY+EM +L+   ++ EDEE TM
Subjt:  RLPKFHGSRKPEEYL-------------HWKRNRESQITSWRELKPLMRRQFVSKSL-----VKLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM

XP_027090397.1 uncharacterized protein LOC113711430 [Coffea arabica]9.6e-0536.08Show/hide
Query:  RLPKFHGSRKPEEYLHW-----------KRNRESQITSWRELKPLMRRQFVSKSLV-----KLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM
        ++P F G   PE YL W           +RNRE QI++W EL+  MR++FV          +L+ L Q  + VE YY+EM   +   ++ ED E+TM
Subjt:  RLPKFHGSRKPEEYLHW-----------KRNRESQITSWRELKPLMRRQFVSKSLV-----KLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM

XP_038888883.1 uncharacterized protein LOC120078660 [Benincasa hispida]9.6e-0543.06Show/hide
Query:  LHWKRNRESQITSWRELKPLMRRQFVSKSLV-----KLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM
        L W+RN E  I +W ELK LMR+ ++ K  +     KL +L+Q  K V+ YY+EM +L+   N+ EDEE  M
Subjt:  LHWKRNRESQITSWRELKPLMRRQFVSKSLV-----KLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM

TrEMBL top hitse value%identityAlignment
A0A2N9GWZ3 Reverse transcriptase3.6e-0541.67Show/hide
Query:  KFHGSRKPEE-YLHWKRNRESQITSWRELKPLMRRQFV-----SKSLVKLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM
        +F G+R  E+  L W+RNRE  I +W E+K +MR++F+      +   KL+ LRQ  ++VE YY+EM   +   NV ED E+TM
Subjt:  KFHGSRKPEE-YLHWKRNRESQITSWRELKPLMRRQFV-----SKSLVKLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM

A0A2N9HCQ9 Uncharacterized protein3.6e-0541.67Show/hide
Query:  KFHGSRKPEE-YLHWKRNRESQITSWRELKPLMRRQFV-----SKSLVKLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM
        +F G+R  E+  L W+RNRE  I +W E+K +MR++F+      +   KL+ LRQ  ++VE YY+EM   +   NV ED E+TM
Subjt:  KFHGSRKPEE-YLHWKRNRESQITSWRELKPLMRRQFV-----SKSLVKLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM

A0A5P1ESV5 Retrotrans_gag domain-containing protein6.7e-0442.86Show/hide
Query:  WKRNRESQITSWRELKPLMRRQFVSKSLV-----KLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM
        W+RNRES I  W E+K +MR++FV          KL++LRQ +++VE YY+E+   +   NV ED E+T+
Subjt:  WKRNRESQITSWRELKPLMRRQFVSKSLV-----KLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTM

A0A6A3BUU6 CCHC-type domain-containing protein7.9e-0534.45Show/hide
Query:  VFNVTHQTRKDHHNSGYLRHTTPR--LPKFHGSRKPEEYLHW--------KRNRESQITSWRELKPLMRRQFVSKS-----LVKLKNLRQNDKNVEAYYE
        V  +T   R D H +     +T +  +P F G   PE YL W        +RN E  I++W E+K +MR++FV          KL+NL+Q + ++E Y++
Subjt:  VFNVTHQTRKDHHNSGYLRHTTPR--LPKFHGSRKPEEYLHW--------KRNRESQITSWRELKPLMRRQFVSKS-----LVKLKNLRQNDKNVEAYYE

Query:  EMCSLLEELNVYEDEESTM
        EM   +   NV ED E+TM
Subjt:  EMCSLLEELNVYEDEESTM

A0A6J1DYV9 uncharacterized protein LOC1110255399.4e-0636.79Show/hide
Query:  RKDHHNSGYLRHTTPRLPKFHGSRKPEEYLHWKRNRE-----SQITSWRELKPLMRRQFVSKSLV-----KLKNLRQNDKNVEAYYEEMCSLLEELNVYE
        R+D+H      +   + PKFHG+   E+YL W++  E     + +T   E K LMRR+F+    +     KL+ LRQ +K+VE YY++M +L+E +++ E
Subjt:  RKDHHNSGYLRHTTPRLPKFHGSRKPEEYLHWKRNRE-----SQITSWRELKPLMRRQFVSKSLV-----KLKNLRQNDKNVEAYYEEMCSLLEELNVYE

Query:  DEESTM
        +EE+TM
Subjt:  DEESTM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAATCTGGAAATCCTACAACCGCCGAGGAAACAGTGTCCCAACTTCGACGATTCATATCTTACTGACCTTTTTGCTGAATATAGTCAAATCAGGCTTATACTCAC
TTGTTCTAAGACCGATTCGCCACGAGCATTCAAGCAAGCATCTCCAAAGGGTATTCACAACAACATCCACCCTACCAAAGGAGAGGAAGCCGAGAGGACAATGATGGCCA
TGAAAGGCAAATCTCAAGGAGAAGGAACAAGTCCACGATGCAAGAATTATAATAACCATGTCTTTAATGTAACTCATCAAACGAGGAAAGATCACCATAATAGTGGCTAC
CTTCGACACACAACTCCTAGACTTCCTAAGTTCCATGGAAGTAGAAAGCCAGAAGAGTATCTTCATTGGAAAAGGAATCGCGAAAGTCAAATCACCTCGTGGAGAGAACT
CAAGCCATTAATGAGGAGACAATTTGTTTCTAAGTCATTAGTCAAGTTGAAAAACTTGAGACAAAACGACAAAAATGTTGAAGCCTACTATGAAGAGATGTGCTCATTGC
TTGAGGAGCTTAACGTTTATGAAGATGAGGAGAGCACCATGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTAATCTGGAAATCCTACAACCGCCGAGGAAACAGTGTCCCAACTTCGACGATTCATATCTTACTGACCTTTTTGCTGAATATAGTCAAATCAGGCTTATACTCAC
TTGTTCTAAGACCGATTCGCCACGAGCATTCAAGCAAGCATCTCCAAAGGGTATTCACAACAACATCCACCCTACCAAAGGAGAGGAAGCCGAGAGGACAATGATGGCCA
TGAAAGGCAAATCTCAAGGAGAAGGAACAAGTCCACGATGCAAGAATTATAATAACCATGTCTTTAATGTAACTCATCAAACGAGGAAAGATCACCATAATAGTGGCTAC
CTTCGACACACAACTCCTAGACTTCCTAAGTTCCATGGAAGTAGAAAGCCAGAAGAGTATCTTCATTGGAAAAGGAATCGCGAAAGTCAAATCACCTCGTGGAGAGAACT
CAAGCCATTAATGAGGAGACAATTTGTTTCTAAGTCATTAGTCAAGTTGAAAAACTTGAGACAAAACGACAAAAATGTTGAAGCCTACTATGAAGAGATGTGCTCATTGC
TTGAGGAGCTTAACGTTTATGAAGATGAGGAGAGCACCATGGATTGA
Protein sequenceShow/hide protein sequence
MCNLEILQPPRKQCPNFDDSYLTDLFAEYSQIRLILTCSKTDSPRAFKQASPKGIHNNIHPTKGEEAERTMMAMKGKSQGEGTSPRCKNYNNHVFNVTHQTRKDHHNSGY
LRHTTPRLPKFHGSRKPEEYLHWKRNRESQITSWRELKPLMRRQFVSKSLVKLKNLRQNDKNVEAYYEEMCSLLEELNVYEDEESTMD