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Moc08g18700 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g18700
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr8:14104947..14105697
RNA-Seq ExpressionMoc08g18700
SyntenyMoc08g18700
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-4360Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH
        MNK+ YTLTTLLNELQT++SL+K KGQ+GEANVATS ++F+RGS+SGTKS PSSS +K +KKKK  G+ +K + AAA   K KAKAA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH

Query:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
        WKRNC KYLAEKKK  +                        GATNHVCSSFQGISS +QL+TGEMT++VGTG VVS +AV  L+L+  K+
Subjt:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-4360.53Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH
        MNK+ YTLTTLLNELQT++SL+K KGQ+GEANVATS ++F+RGS+SGTKS PSSS +K +KKKK  G+ +K + AAA   K KAKAA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH

Query:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
        WKRNC KYLAEKKK  +                        GATNHVCSSFQGISS RQL+TGEMT++VGTG VVS +AV  L+L   K+
Subjt:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-4360.53Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH
        MNK+ YTLTTLLNELQT++SL+K KGQ+GEANVATS ++F+RGS+SGTKS PSSS +K +KKKK  G+ +K + AAA   K KAKAA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH

Query:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
        WKRNC KYLAEKKK  +                        GATNHVCSSFQGISS RQL+TGEMT++VGTG VVS +AV  L+L   K+
Subjt:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-4360.53Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH
        MNK+ YTLTTLLNELQT++SL+K KGQ+GEANVATS ++F+RGS+SGTKS PSSS +K +KKKK  G+ +K + AAA   K KAKAA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH

Query:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
        WKRNC KYLAEKKK  +                        GATNHVCSSFQGISS RQL+TGEMT++VGTG VVS +AV  L+L   K+
Subjt:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-4360.53Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH
        MNK+ YTLTTLLNELQT++SL+K KGQ+GEANVATS ++F+RGS+SGTKS PSSS +K +KKKK  G+ +K + AAA   K KAKAA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH

Query:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
        WKRNC KYLAEKKK  +                        GATNHVCSSFQGISS RQL+TGEMT++VGTG VVS +AV  L+L   K+
Subjt:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.3e-4360.53Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH
        MNK+ YTLTTLLNELQT++SL+K KGQ+GEANVATS ++F+RGS+SGTKS PSSS +K +KKKK  G+ +K + AAA   K KAKAA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH

Query:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
        WKRNC KYLAEKKK  +                        GATNHVCSSFQGISS RQL+TGEMT++VGTG VVS +AV  L+L   K+
Subjt:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
A0A5A7TU93 Gag/pol protein9.7e-4460Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH
        MNK+ YTLTTLLNELQT++SL+K KGQ+GEANVATS ++F+RGS+SGTKS PSSS +K +KKKK  G+ +K + AAA   K KAKAA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH

Query:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
        WKRNC KYLAEKKK  +                        GATNHVCSSFQGISS +QL+TGEMT++VGTG VVS +AV  L+L+  K+
Subjt:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
A0A5A7TWB9 Gag/pol protein1.3e-4360.53Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH
        MNK+ YTLTTLLNELQT++SL+K KGQ+GEANVATS ++F+RGS+SGTKS PSSS +K +KKKK  G+ +K + AAA   K KAKAA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH

Query:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
        WKRNC KYLAEKKK  +                        GATNHVCSSFQGISS RQL+TGEMT++VGTG VVS +AV  L+L   K+
Subjt:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
A0A5A7TZD7 Gag/pol protein1.3e-4360.53Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH
        MNK+ YTLTTLLNELQT++SL+K KGQ+GEANVATS ++F+RGS+SGTKS PSSS +K +KKKK  G+ +K + AAA   K KAKAA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH

Query:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
        WKRNC KYLAEKKK  +                        GATNHVCSSFQGISS RQL+TGEMT++VGTG VVS +AV  L+L   K+
Subjt:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
A0A5A7V4M1 Gag/pol protein1.3e-4360.53Show/hide
Query:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH
        MNK+ YTLTTLLNELQT++SL+K KGQ+GEANVATS ++F+RGS+SGTKS PSSS +K +KKKK  G+ +K + AAA   K KAKAA KG CFHCN +GH
Subjt:  MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGH

Query:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
        WKRNC KYLAEKKK  +                        GATNHVCSSFQGISS RQL+TGEMT++VGTG VVS +AV  L+L   K+
Subjt:  WKRNCLKYLAEKKKGNE------------------------GATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAGTTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAATCTCTTATAAAAAGTAAGGGACAAGAAGGGGAGGCAAATGTTGCCACCTCCAA
GAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTCTGCACCCTCTTCTTCTAGAAGTAAGACTTTCAAGAAGAAGAAGGCTGCTGGTAAAAGGTCTAAACCTGACTTCG
CTGCTGCCGCTGCTAAGAAAGGCAAGGCCAAGGCTGCAGACAAAGGAAAATGTTTCCACTGCAACTTGGATGGGCATTGGAAGCGCAATTGCCTGAAGTACCTGGCCGAA
AAGAAGAAAGGCAACGAAGGAGCGACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTTGAGGCAGCTTGACACCGGAGAAATGACCCTCAAGGTCGGAACGGG
AGAGGTCGTCTCAGTCGTGGCGGTAGAGGAGCTCAAGTTGTTTACAAACAAGAATATGTGCGAAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATAAGTTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAATCTCTTATAAAAAGTAAGGGACAAGAAGGGGAGGCAAATGTTGCCACCTCCAA
GAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTCTGCACCCTCTTCTTCTAGAAGTAAGACTTTCAAGAAGAAGAAGGCTGCTGGTAAAAGGTCTAAACCTGACTTCG
CTGCTGCCGCTGCTAAGAAAGGCAAGGCCAAGGCTGCAGACAAAGGAAAATGTTTCCACTGCAACTTGGATGGGCATTGGAAGCGCAATTGCCTGAAGTACCTGGCCGAA
AAGAAGAAAGGCAACGAAGGAGCGACTAATCACGTTTGTTCTTCATTTCAGGGAATTAGTTCCTTGAGGCAGCTTGACACCGGAGAAATGACCCTCAAGGTCGGAACGGG
AGAGGTCGTCTCAGTCGTGGCGGTAGAGGAGCTCAAGTTGTTTACAAACAAGAATATGTGCGAAGACTAA
Protein sequenceShow/hide protein sequence
MNKLEYTLTTLLNELQTYQSLIKSKGQEGEANVATSKRFNRGSSSGTKSAPSSSRSKTFKKKKAAGKRSKPDFAAAAAKKGKAKAADKGKCFHCNLDGHWKRNCLKYLAE
KKKGNEGATNHVCSSFQGISSLRQLDTGEMTLKVGTGEVVSVVAVEELKLFTNKNMCED