; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g25540 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g25540
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Genome locationchr8:18432424..18437806
RNA-Seq ExpressionMoc08g25540
SyntenyMoc08g25540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022153198.1 uncharacterized protein LOC111020753 [Momordica charantia]1.2e-3134.05Show/hide
Query:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA---------------------------------------------------
        +DGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA                                                   
Subjt:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA---------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------NPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKF
                                               NPPPYLEDMYHY VKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPK KF
Subjt:  ---------------------------------------NPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKF

Query:  VAAKRMEGETMFHTERSQKSRFHNSRRYH--------DNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYED
        VAAKRMEGE+  +T+R++  +    +             H   D   K ++ IR  + D ++ C+E    +E+
Subjt:  VAAKRMEGETMFHTERSQKSRFHNSRRYH--------DNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYED

XP_022157215.1 uncharacterized protein LOC111023977 [Momordica charantia]5.3e-10982.94Show/hide
Query:  MFHTERSQKSRFHNSRRYHDNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYEDMKRHATKSVQKEDDCP-PQEENHQQIPNEAENQDAI-DANVQTIL
        MFHTERSQKS+FH+SRR +DNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYEDM+RHATKSV+KE+DCP PQEENHQ IPNE ENQDA+ D NV+T++
Subjt:  MFHTERSQKSRFHNSRRYHDNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYEDMKRHATKSVQKEDDCP-PQEENHQQIPNEAENQDAI-DANVQTIL

Query:  HAQQEDFNIYVVIYDAEEDVHVEVLTPDEYTTTEEVLIEKAIEITNIVQIGESKKSMQLQNEDLGNTQKPHSLIASMPL-----------YWGFKPGIWN
        HA+QEDFNI VVIYDAEEDVHVEVLTPDEYTT EEVLIEKA+EITNIVQ+GESKKS QLQN DLGNTQK HSLIAS+PL           YWGFKP IW 
Subjt:  HAQQEDFNIYVVIYDAEEDVHVEVLTPDEYTTTEEVLIEKAIEITNIVQIGESKKSMQLQNEDLGNTQKPHSLIASMPL-----------YWGFKPGIWN

Query:  KTARFFFTTSNYKFTIQIYYLINMFERAQDAEYKVALQGDLIDSRTNPSEEG
        KTARFFFT SNYKF IQIYYLIN+FERAQDAEYKVALQGD IDSRTNPSE+G
Subjt:  KTARFFFTTSNYKFTIQIYYLINMFERAQDAEYKVALQGDLIDSRTNPSEEG

XP_022158838.1 uncharacterized protein LOC111025303 [Momordica charantia]6.1e-3336.39Show/hide
Query:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA---------------------------------------------------
        +DGVPQVPQDPN VILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA                                                   
Subjt:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA---------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----NPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAKRMEGETMFHTE-------RSQKSRFHNSRR
             NPP YLEDMYHYAVKIEDQ KEEKEYSKRYT KANTYSNSNAW KAGFVNRNES+QPKGKFVAAKRMEGE+    +       R   S     + 
Subjt:  -----NPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAKRMEGETMFHTE-------RSQKSRFHNSRR

Query:  YHDNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYED
            H   D   K ++ IR  + D ++ C+E    +E+
Subjt:  YHDNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYED

XP_023520950.1 uncharacterized protein LOC111784506, partial [Cucurbita pepo subsp. pepo]7.5e-2345.12Show/hide
Query:  DANPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAKRMEGETMF-------HTERSQKSRFHNSRRYHD
        D NPPPYLEDMYHYA+KIEDQLKEEKE+SKRYTS+ NT+SNSN WNK  FVNRNES+ PK KFVAAKR+E E+          T + + S     +    
Subjt:  DANPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAKRMEGETMF-------HTERSQKSRFHNSRRYHD

Query:  NHHGDDPYTKELVGIRKNINDLNELCQEF-KMLYEDMKRHATKSV-------QKEDDCPPQEEN
         H   +   K+++ IR  I D ++ C++    L E++  +  + V       +K++D   + EN
Subjt:  NHHGDDPYTKELVGIRKNINDLNELCQEF-KMLYEDMKRHATKSV-------QKEDDCPPQEEN

XP_023544048.1 uncharacterized protein LOC111803745 [Cucurbita pepo subsp. pepo]1.4e-2143.39Show/hide
Query:  MEMMMEDRQERRAQQQREERAL--------QEDDANPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAK
        ME MME    R  ++    R L           D NPPPYLEDMYHYA+KIEDQLKEEKE+SKRYTS+ N +SNS  WNK  FVNRNES+ PK KFVAAK
Subjt:  MEMMMEDRQERRAQQQREERAL--------QEDDANPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAK

Query:  RMEGETMF-------HTERSQKSRFHNSRRYHDNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYEDMKRHATKSVQKEDDCPPQEEN
        R+E E+          T + + S     +     H   +   K+++ IR  I DLN+ C       ED   H  + +   DD   +E N
Subjt:  RMEGETMF-------HTERSQKSRFHNSRRYHDNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYEDMKRHATKSVQKEDDCPPQEEN

TrEMBL top hitse value%identityAlignment
A0A5D3DRJ1 F15O4.138.4e-2046.27Show/hide
Query:  DANPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAKRMEGETMFHTERSQKSRFHNSRRYHD-------
        D NPP  +EDMYHYA+KIE QLKEEKE SKRY SK +T+S+SN WNK GFVNRNES+Q +GKFVAA+++E      TE S   +F  S+   +       
Subjt:  DANPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAKRMEGETMFHTERSQKSRFHNSRRYHD-------

Query:  ------NHHGDDPYTKELVGIRKNINDLNELCQE
               H   D   K ++ +R  + D  + C+E
Subjt:  ------NHHGDDPYTKELVGIRKNINDLNELCQE

A0A5D3DRJ1 F15O4.138.4e-0471.11Show/hide
Query:  VPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDD
        VP+V  DPN+ ILQAIQGM+E+M E+RQERRAQQQRE R  QED+
Subjt:  VPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDD

A0A6J1DGU9 uncharacterized protein LOC1110207535.6e-3234.05Show/hide
Query:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA---------------------------------------------------
        +DGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA                                                   
Subjt:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA---------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------NPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKF
                                               NPPPYLEDMYHY VKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPK KF
Subjt:  ---------------------------------------NPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKF

Query:  VAAKRMEGETMFHTERSQKSRFHNSRRYH--------DNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYED
        VAAKRMEGE+  +T+R++  +    +             H   D   K ++ IR  + D ++ C+E    +E+
Subjt:  VAAKRMEGETMFHTERSQKSRFHNSRRYH--------DNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYED

A0A6J1DSH3 uncharacterized protein LOC1110239772.5e-10982.94Show/hide
Query:  MFHTERSQKSRFHNSRRYHDNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYEDMKRHATKSVQKEDDCP-PQEENHQQIPNEAENQDAI-DANVQTIL
        MFHTERSQKS+FH+SRR +DNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYEDM+RHATKSV+KE+DCP PQEENHQ IPNE ENQDA+ D NV+T++
Subjt:  MFHTERSQKSRFHNSRRYHDNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYEDMKRHATKSVQKEDDCP-PQEENHQQIPNEAENQDAI-DANVQTIL

Query:  HAQQEDFNIYVVIYDAEEDVHVEVLTPDEYTTTEEVLIEKAIEITNIVQIGESKKSMQLQNEDLGNTQKPHSLIASMPL-----------YWGFKPGIWN
        HA+QEDFNI VVIYDAEEDVHVEVLTPDEYTT EEVLIEKA+EITNIVQ+GESKKS QLQN DLGNTQK HSLIAS+PL           YWGFKP IW 
Subjt:  HAQQEDFNIYVVIYDAEEDVHVEVLTPDEYTTTEEVLIEKAIEITNIVQIGESKKSMQLQNEDLGNTQKPHSLIASMPL-----------YWGFKPGIWN

Query:  KTARFFFTTSNYKFTIQIYYLINMFERAQDAEYKVALQGDLIDSRTNPSEEG
        KTARFFFT SNYKF IQIYYLIN+FERAQDAEYKVALQGD IDSRTNPSE+G
Subjt:  KTARFFFTTSNYKFTIQIYYLINMFERAQDAEYKVALQGDLIDSRTNPSEEG

A0A6J1DX75 uncharacterized protein LOC1110253033.0e-3336.39Show/hide
Query:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA---------------------------------------------------
        +DGVPQVPQDPN VILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA                                                   
Subjt:  EDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERALQEDDA---------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----NPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAKRMEGETMFHTE-------RSQKSRFHNSRR
             NPP YLEDMYHYAVKIEDQ KEEKEYSKRYT KANTYSNSNAW KAGFVNRNES+QPKGKFVAAKRMEGE+    +       R   S     + 
Subjt:  -----NPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAKRMEGETMFHTE-------RSQKSRFHNSRR

Query:  YHDNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYED
            H   D   K ++ IR  + D ++ C+E    +E+
Subjt:  YHDNHHGDDPYTKELVGIRKNINDLNELCQEFKMLYED

A0A6J1EVI6 LOW QUALITY PROTEIN: uncharacterized protein LOC1114384597.6e-2160.38Show/hide
Query:  MEMMMEDRQERRAQQQREERAL--------QEDDANPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAK
        ME MME    R  ++    R L           D NPPPYLEDM HYA+KIEDQLKEEKE+SKRYTS+ NT+SNS  WNK  FVNRNES+ PK KFVAAK
Subjt:  MEMMMEDRQERRAQQQREERAL--------QEDDANPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAK

Query:  RMEGET
        R+E E+
Subjt:  RMEGET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACGGGAAAACTTGTCTATTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGATTGGTGAACAGGATCTAGGAGTGACCATCGTAGATTCTAAGTCC
GATCTAAGAGTGATTCATCTTCTAACCTTACTCTTGGTTGGAATCATTCGAGCATTGGTCGACATCCTTTGGCCGGTTCTAGAGGATGGAGTACCACAAGTACCG
CAAGATCCTAACATGGTGATTCTTCAAGCAATTCAAGGAATGATGGAAATGATGATGGAAGATAGACAAGAAAGGAGAGCGCAACAACAAAGAGAAGAACGAGCC
TTACAAGAAGATGATGCAAATCCACCGCCTTACCTAGAAGATATGTACCATTATGCTGTCAAAATTGAAGATCAATTGAAGGAAGAAAAGGAGTATTCAAAAAGG
TACACATCTAAAGCTAATACATATTCCAATTCTAATGCTTGGAACAAGGCTGGTTTTGTGAATAGGAATGAATCATTGCAACCAAAAGGAAAGTTCGTAGCTGCC
AAAAGAATGGAGGGAGAAACCATGTTTCACACTGAACGTTCACAGAAATCGCGGTTCCACAATAGCCGGCGATATCATGATAACCACCATGGCGATGATCCATAT
ACGAAGGAATTGGTCGGGATCCGCAAAAACATAAATGACCTCAATGAATTGTGCCAAGAGTTCAAAATGCTATACGAAGACATGAAGAGACATGCTACAAAATCG
GTTCAAAAAGAGGACGATTGTCCGCCTCAAGAGGAAAATCATCAACAAATTCCAAATGAGGCAGAGAATCAAGATGCCATTGATGCGAATGTTCAAACTATTCTG
CATGCCCAACAAGAAGATTTTAATATTTATGTTGTTATTTATGATGCTGAAGAAGATGTGCATGTTGAGGTTTTGACGCCTGATGAGTACACAACCACAGAGGAG
GTACTTATTGAGAAAGCGATCGAGATTACAAATATTGTGCAAATTGGGGAGAGTAAGAAAAGCATGCAACTGCAAAATGAAGACCTCGGCAACACTCAGAAGCCA
CATTCACTCATTGCTTCAATGCCCTTGTATTGGGGATTTAAACCAGGAATTTGGAACAAGACTGCAAGGTTTTTCTTTACTACAAGCAATTACAAGTTTACCATA
CAAATTTATTATCTTATCAACATGTTTGAACGAGCTCAAGATGCCGAGTACAAGGTTGCATTGCAAGGAGATCTTATAGATTCGAGGACGAATCCTTCTGAAGAA
GGGAGGATGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACGGGAAAACTTGTCTATTTTGAAAGATGGCACGGAGGACAAAAAAAGTGTGCAGATTGGTGAACAGGATCTAGGAGTGACCATCGTAGATTCTAAGTCC
GATCTAAGAGTGATTCATCTTCTAACCTTACTCTTGGTTGGAATCATTCGAGCATTGGTCGACATCCTTTGGCCGGTTCTAGAGGATGGAGTACCACAAGTACCG
CAAGATCCTAACATGGTGATTCTTCAAGCAATTCAAGGAATGATGGAAATGATGATGGAAGATAGACAAGAAAGGAGAGCGCAACAACAAAGAGAAGAACGAGCC
TTACAAGAAGATGATGCAAATCCACCGCCTTACCTAGAAGATATGTACCATTATGCTGTCAAAATTGAAGATCAATTGAAGGAAGAAAAGGAGTATTCAAAAAGG
TACACATCTAAAGCTAATACATATTCCAATTCTAATGCTTGGAACAAGGCTGGTTTTGTGAATAGGAATGAATCATTGCAACCAAAAGGAAAGTTCGTAGCTGCC
AAAAGAATGGAGGGAGAAACCATGTTTCACACTGAACGTTCACAGAAATCGCGGTTCCACAATAGCCGGCGATATCATGATAACCACCATGGCGATGATCCATAT
ACGAAGGAATTGGTCGGGATCCGCAAAAACATAAATGACCTCAATGAATTGTGCCAAGAGTTCAAAATGCTATACGAAGACATGAAGAGACATGCTACAAAATCG
GTTCAAAAAGAGGACGATTGTCCGCCTCAAGAGGAAAATCATCAACAAATTCCAAATGAGGCAGAGAATCAAGATGCCATTGATGCGAATGTTCAAACTATTCTG
CATGCCCAACAAGAAGATTTTAATATTTATGTTGTTATTTATGATGCTGAAGAAGATGTGCATGTTGAGGTTTTGACGCCTGATGAGTACACAACCACAGAGGAG
GTACTTATTGAGAAAGCGATCGAGATTACAAATATTGTGCAAATTGGGGAGAGTAAGAAAAGCATGCAACTGCAAAATGAAGACCTCGGCAACACTCAGAAGCCA
CATTCACTCATTGCTTCAATGCCCTTGTATTGGGGATTTAAACCAGGAATTTGGAACAAGACTGCAAGGTTTTTCTTTACTACAAGCAATTACAAGTTTACCATA
CAAATTTATTATCTTATCAACATGTTTGAACGAGCTCAAGATGCCGAGTACAAGGTTGCATTGCAAGGAGATCTTATAGATTCGAGGACGAATCCTTCTGAAGAA
GGGAGGATGATATGA
Protein sequenceShow/hide protein sequence
MARENLSILKDGTEDKKSVQIGEQDLGVTIVDSKSDLRVIHLLTLLLVGIIRALVDILWPVLEDGVPQVPQDPNMVILQAIQGMMEMMMEDRQERRAQQQREERA
LQEDDANPPPYLEDMYHYAVKIEDQLKEEKEYSKRYTSKANTYSNSNAWNKAGFVNRNESLQPKGKFVAAKRMEGETMFHTERSQKSRFHNSRRYHDNHHGDDPY
TKELVGIRKNINDLNELCQEFKMLYEDMKRHATKSVQKEDDCPPQEENHQQIPNEAENQDAIDANVQTILHAQQEDFNIYVVIYDAEEDVHVEVLTPDEYTTTEE
VLIEKAIEITNIVQIGESKKSMQLQNEDLGNTQKPHSLIASMPLYWGFKPGIWNKTARFFFTTSNYKFTIQIYYLINMFERAQDAEYKVALQGDLIDSRTNPSEE
GRMI