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Moc08g25610 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g25610
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU3 small nucleolar RNA-associated protein 25
Genome locationchr8:18469909..18475187
RNA-Seq ExpressionMoc08g25610
SyntenyMoc08g25610
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0019843 - rRNA binding (molecular function)
GO:0034511 - U3 snoRNA binding (molecular function)
InterPro domainsIPR010678 - U3 small nucleolar RNA-associated protein 25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011656926.1 U3 small nucleolar RNA-associated protein 25 isoform X1 [Cucumis sativus]2.7e-3489.77Show/hide
Query:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW
        K+IKLFSDFYSSD++VASPLGLIT+L  E EKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVN VIE MNKIPSKQHGTDVMRIRQW
Subjt:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW

XP_011656929.1 U3 small nucleolar RNA-associated protein 25 isoform X2 [Cucumis sativus]2.7e-3489.77Show/hide
Query:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW
        K+IKLFSDFYSSD++VASPLGLIT+L  E EKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVN VIE MNKIPSKQHGTDVMRIRQW
Subjt:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW

XP_022135100.1 U3 small nucleolar RNA-associated protein 25 [Momordica charantia]4.1e-3590.91Show/hide
Query:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW
        K+IKLF DFYSSD++VASPLGLIT+L  ETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVN VIEQMNKIPSKQHGTDVMRIRQW
Subjt:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW

XP_022930084.1 U3 small nucleolar RNA-associated protein 25 isoform X1 [Cucurbita moschata]6.0e-3488.64Show/hide
Query:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW
        K+I+LFSDFYSSD++VASPLGLIT+L  E EKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVN VIE MNKIPSKQHGTDVMRIRQW
Subjt:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW

XP_023531649.1 U3 small nucleolar RNA-associated protein 25 isoform X1 [Cucurbita pepo subsp. pepo]6.0e-3488.64Show/hide
Query:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW
        K+I+LFSDFYSSD++VASPLGLIT+L  E EKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVN VIE MNKIPSKQHGTDVMRIRQW
Subjt:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW

TrEMBL top hitse value%identityAlignment
A0A0A0LWW7 Uncharacterized protein1.3e-3489.77Show/hide
Query:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW
        K+IKLFSDFYSSD++VASPLGLIT+L  E EKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVN VIE MNKIPSKQHGTDVMRIRQW
Subjt:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW

A0A1S3BWL1 U3 small nucleolar RNA-associated protein 25 isoform X14.9e-3488.64Show/hide
Query:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW
        K+IKLFSDFYSSD++VASPLGLIT+L  E E NKEKDVDYLSSIEVLIIDHADIIAMQNWSHVN VIE MNKIPSKQHGTDVMRIRQW
Subjt:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW

A0A6J1BZN8 U3 small nucleolar RNA-associated protein 252.0e-3590.91Show/hide
Query:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW
        K+IKLF DFYSSD++VASPLGLIT+L  ETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVN VIEQMNKIPSKQHGTDVMRIRQW
Subjt:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW

A0A6J1EPX7 U3 small nucleolar RNA-associated protein 25 isoform X22.9e-3488.64Show/hide
Query:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW
        K+I+LFSDFYSSD++VASPLGLIT+L  E EKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVN VIE MNKIPSKQHGTDVMRIRQW
Subjt:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW

A0A6J1EQL5 U3 small nucleolar RNA-associated protein 25 isoform X12.9e-3488.64Show/hide
Query:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW
        K+I+LFSDFYSSD++VASPLGLIT+L  E EKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVN VIE MNKIPSKQHGTDVMRIRQW
Subjt:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW

SwissProt top hitse value%identityAlignment
A4R0E6 U3 small nucleolar RNA-associated protein 252.3e-2043.51Show/hide
Query:  DVQHFPRALTRPAKQSPTLTADLSDLESTPIFRLRVNSTHLFEKNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAM
        D  +  R   + +   PT   DL +  +  +FRL V  T    K IK FS FY+SD+++ASPLGL   +    EKN   D D+LSSIE++I+D AD I M
Subjt:  DVQHFPRALTRPAKQSPTLTADLSDLESTPIFRLRVNSTHLFEKNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAM

Query:  QNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW
        QNW HV  + E +N+ P + HG D  RIR W
Subjt:  QNWSHVNIVIEQMNKIPSKQHGTDVMRIRQW

B6JX19 U3 small nucleolar RNA-associated protein 251.6e-2151.49Show/hide
Query:  IFRLRVNSTHLFEKNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQ
        +FRL +  T    K IKLFS FY+SD++VASPLGL   +    + +K++D DYLSSIEV I+D AD + MQNW H+  V E MNK+P   HG D  R+R 
Subjt:  IFRLRVNSTHLFEKNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQ

Query:  W
        W
Subjt:  W

C5G0N1 U3 small nucleolar RNA-associated protein 251.0e-2049.5Show/hide
Query:  IFRLRVNSTHLFEKNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQ
        +FRL +  T    K++KLFS FYSSD+++ASPLGL T +  E E  K+ + D+LSSIE++I+DHAD + MQNW HV  +   +N  P + HG D  R+RQ
Subjt:  IFRLRVNSTHLFEKNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQ

Query:  W
        W
Subjt:  W

Q68CQ4 U3 small nucleolar RNA-associated protein 25 homolog1.8e-2041.73Show/hide
Query:  QDELLTDVQHFPRALTRPAKQSPTLTADLSDLESTPIFRLRVNSTHLFEKNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDH
        Q E  +D +  P  L RP         ++ D      FR+ V    + +++I+L++ FYSSD+++ASPLGL T +  E E  K++D D+LSSIE+LIID 
Subjt:  QDELLTDVQHFPRALTRPAKQSPTLTADLSDLESTPIFRLRVNSTHLFEKNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDH

Query:  ADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQWSV
        ADI  MQNW HV  ++  MN +P   HG D  R+R WS+
Subjt:  ADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQWSV

Q8BTT6 U3 small nucleolar RNA-associated protein 25 homolog2.3e-2041.01Show/hide
Query:  QDELLTDVQHFPRALTRPAKQSPTLTADLSDLESTPIFRLRVNSTHLFEKNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDH
        Q E  +D +  P  L RP         ++ D      FR+ V    + +++I+L++ FYSSD+++ASPLGL T +  E E  K++D D+LSS+E+LIID 
Subjt:  QDELLTDVQHFPRALTRPAKQSPTLTADLSDLESTPIFRLRVNSTHLFEKNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDH

Query:  ADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQWSV
        ADI  MQNW HV  ++  MN +P   HG D  R+R WS+
Subjt:  ADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQWSV

Arabidopsis top hitse value%identityAlignment
AT1G17690.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink).4.9e-2665.12Show/hide
Query:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIR
        K+I+L+ DFYSSD++VASPL L    I   E+NKE+DVDYLSSIEVL+IDHADII+MQNWS +  V++ +N++P+KQHGT+VMRIR
Subjt:  KNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVDYLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAGCCCAAAATCGTTGAGCTCGGACAGGTAGTAGATCAGAACGTACAAGATGAGCTATTGACCGATGTCCAACACTTTCCCAGAGCACTCACGAGACCT
GCAAAACAAAGTCCTACCCTGACCGCCGACCTAAGCGATTTGGAGTCTACTCCTATATTTCGCTTGCGTGTTAATTCAACTCACCTCTTCGAGAAGAACATTAAG
TTATTCAGTGATTTCTATTCATCAGACGTAGTTGTTGCTTCTCCCCTTGGTCTGATTACAGAACTAATTGATGAAACAGAGAAAAACAAGGAGAAAGATGTTGAT
TATCTTTCTTCCATTGAGGTCTTAATCATTGATCATGCAGATATAATAGCAATGCAGAACTGGTCCCATGTGAATATTGTCATTGAACAAATGAATAAGATACCA
TCAAAGCAGCATGGAACTGATGTGATGCGGATAAGACAGTGGTCAGTGGTTACGAACCGAGCTACGAGGACGAGCCGACCTGAACGCAAGGTCTCGAGAGTGTTC
GGAGAGGGCGCTGGGCAGTTGGCTGTAGTTCGTTCTAACCGTTCCGATCTACTTCGTACCCAAGCTCACCAAATCCGAGCTCCAACATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAGCCCAAAATCGTTGAGCTCGGACAGGTAGTAGATCAGAACGTACAAGATGAGCTATTGACCGATGTCCAACACTTTCCCAGAGCACTCACGAGACCT
GCAAAACAAAGTCCTACCCTGACCGCCGACCTAAGCGATTTGGAGTCTACTCCTATATTTCGCTTGCGTGTTAATTCAACTCACCTCTTCGAGAAGAACATTAAG
TTATTCAGTGATTTCTATTCATCAGACGTAGTTGTTGCTTCTCCCCTTGGTCTGATTACAGAACTAATTGATGAAACAGAGAAAAACAAGGAGAAAGATGTTGAT
TATCTTTCTTCCATTGAGGTCTTAATCATTGATCATGCAGATATAATAGCAATGCAGAACTGGTCCCATGTGAATATTGTCATTGAACAAATGAATAAGATACCA
TCAAAGCAGCATGGAACTGATGTGATGCGGATAAGACAGTGGTCAGTGGTTACGAACCGAGCTACGAGGACGAGCCGACCTGAACGCAAGGTCTCGAGAGTGTTC
GGAGAGGGCGCTGGGCAGTTGGCTGTAGTTCGTTCTAACCGTTCCGATCTACTTCGTACCCAAGCTCACCAAATCCGAGCTCCAACATTTTAG
Protein sequenceShow/hide protein sequence
MFEPKIVELGQVVDQNVQDELLTDVQHFPRALTRPAKQSPTLTADLSDLESTPIFRLRVNSTHLFEKNIKLFSDFYSSDVVVASPLGLITELIDETEKNKEKDVD
YLSSIEVLIIDHADIIAMQNWSHVNIVIEQMNKIPSKQHGTDVMRIRQWSVVTNRATRTSRPERKVSRVFGEGAGQLAVVRSNRSDLLRTQAHQIRAPTF