CuGenDBv2

Gene ID	Moc08g26330
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr8:18900201..18900805
RNA-Seq Expression	Moc08g26330
Synteny	Moc08g26330
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-39

69.86

Show/hide

Query:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG
        MNEG+SVREHVLN+MV+FNV EMNGAVIDE SQVSFILESLP+SFL+FR+NAVMNK+ YTLTTLLNELQT++SLMK K Q+GEANVATS ++FHRGSTSG
Subjt:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG

Query:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN
        TK   SSS +K +KKKK         AA K  K     K  CFHCN
Subjt:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-39

69.86

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Query:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG
        MNEG+SVREHVLN+MV+FNV EMNGAVIDE SQVSFILESLP+SFL+FR+NAVMNK+ YTLTTLLNELQT++SLMK K Q+GEANVATS ++FHRGSTSG
Subjt:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG

Query:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN
        TK   SSS +K +KKKK         AA K  K     K  CFHCN
Subjt:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-39

69.86

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Query:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG
        MNEG+SVREHVLN+MV+FNV EMNGAVIDE SQVSFILESLP+SFL+FR+NAVMNK+ YTLTTLLNELQT++SLMK K Q+GEANVATS ++FHRGSTSG
Subjt:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG

Query:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN
        TK   SSS +K +KKKK         AA K  K     K  CFHCN
Subjt:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-39

69.86

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Query:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG
        MNEG+SVREHVLN+MV+FNV EMNGAVIDE SQVSFILESLP+SFL+FR+NAVMNK+ YTLTTLLNELQT++SLMK K Q+GEANVATS ++FHRGSTSG
Subjt:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG

Query:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN
        TK   SSS +K +KKKK         AA K  K     K  CFHCN
Subjt:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-39

69.86

Show/hide

Query:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG
        MNEG+SVREHVLN+MV+FNV EMNGAVIDE SQVSFILESLP+SFL+FR+NAVMNK+ YTLTTLLNELQT++SLMK K Q+GEANVATS ++FHRGSTSG
Subjt:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG

Query:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN
        TK   SSS +K +KKKK         AA K  K     K  CFHCN
Subjt:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

8.3e-40

69.86

Show/hide

Query:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG
        MNEG+SVREHVLN+MV+FNV EMNGAVIDE SQVSFILESLP+SFL+FR+NAVMNK+ YTLTTLLNELQT++SLMK K Q+GEANVATS ++FHRGSTSG
Subjt:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG

Query:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN
        TK   SSS +K +KKKK         AA K  K     K  CFHCN
Subjt:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN

A0A5A7TU93 Gag/pol protein

8.3e-40

69.86

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Query:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG
        MNEG+SVREHVLN+MV+FNV EMNGAVIDE SQVSFILESLP+SFL+FR+NAVMNK+ YTLTTLLNELQT++SLMK K Q+GEANVATS ++FHRGSTSG
Subjt:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG

Query:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN
        TK   SSS +K +KKKK         AA K  K     K  CFHCN
Subjt:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN

A0A5A7TWB9 Gag/pol protein

8.3e-40

69.86

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Query:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG
        MNEG+SVREHVLN+MV+FNV EMNGAVIDE SQVSFILESLP+SFL+FR+NAVMNK+ YTLTTLLNELQT++SLMK K Q+GEANVATS ++FHRGSTSG
Subjt:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG

Query:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN
        TK   SSS +K +KKKK         AA K  K     K  CFHCN
Subjt:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN

A0A5A7V4M1 Gag/pol protein

8.3e-40

69.86

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Query:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG
        MNEG+SVREHVLN+MV+FNV EMNGAVIDE SQVSFILESLP+SFL+FR+NAVMNK+ YTLTTLLNELQT++SLMK K Q+GEANVATS ++FHRGSTSG
Subjt:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG

Query:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN
        TK   SSS +K +KKKK         AA K  K     K  CFHCN
Subjt:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN

A0A5D3CPJ6 Gag/pol protein

8.3e-40

69.86

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Query:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG
        MNEG+SVREHVLN+MV+FNV EMNGAVIDE SQVSFILESLP+SFL+FR+NAVMNK+ YTLTTLLNELQT++SLMK K Q+GEANVATS ++FHRGSTSG
Subjt:  MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATS-KRFHRGSTSG

Query:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN
        TK   SSS +K +KKKK         AA K  K     K  CFHCN
Subjt:  TKFALSSSRSKTFKKKK---------AADKGPKIVDKEK--CFHCN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATGAGGGCTCGTCAGTGCGAGAACACGTTCTCAACCTGATGGTCAACTTCAATGTGGTAGAGATGAACGGGGCCGTCATAGATGAGCAGAGTCAGGTCAGC
TTCATTCTAGAATCTCTTCCGAAGAGTTTCCTGAAATTCCGCAACAACGCGGTTATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAACTACAGACC
TACCAGTCACTTATGAAAAATAAGAGACAGGAAGGGGAGGCAAACGTTGCCACCTCCAAAAGGTTTCACCGAGGTTCGACCTCTGGAACCAAGTTTGCGCTCTCT
TCTTCTAGAAGTAAGACTTTTAAAAAGAAGAAGGCTGCTGATAAAGGGCCCAAGATTGTAGACAAAGAAAAATGTTTCCATTGCAACGGGGACAAGGAAGTGCAA
TTGCCCGAAATACCTGGCCGAGAAGTAGAAAGCCAACGAAGGGAATTAGTTCCTAGTGGTAGCATGAAGTCTGAGAGATGA

mRNA sequence

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Protein sequence

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MNEGSSVREHVLNLMVNFNVVEMNGAVIDEQSQVSFILESLPKSFLKFRNNAVMNKLEYTLTTLLNELQTYQSLMKNKRQEGEANVATSKRFHRGSTSGTKFALS
SSRSKTFKKKKAADKGPKIVDKEKCFHCNGDKEVQLPEIPGREVESQRRELVPSGSMKSER

Moc08g26330 (gene) of Bitter gourd (OHB3-1) v2 genome