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Moc08g26480 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g26480
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr8:19049867..19055272
RNA-Seq ExpressionMoc08g26480
SyntenyMoc08g26480
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34247.1 ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]3.9e-5567.07Show/hide
Query:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---
        MP+GYQ PKFQ FDG+GN KQHIAHFV+TCENAG+RGDQLVKQFVR+LKGNA++WYTDLEP++I++WEQLE EFLNRFYSTRR+VSMMELTNT+QRK   
Subjt:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---

Query:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS
                                      GMHWELLYILQG+KPR FEELATRAHD ELSIA+
Subjt:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS

XP_022159413.1 uncharacterized protein LOC111025834 [Momordica charantia]2.7e-5669.51Show/hide
Query:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---
        MP GYQ PKFQHFDGKGN KQHIAHFV+TCENAGTRGDQLVKQFVRTLKGNA+DWYTDLEP+ IESWEQLE+EFLNRFYST+R VSMMELTN+ QRK   
Subjt:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---

Query:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS
                                      GMHWELLYILQ +KPR FEELATRAHD ELSIA+
Subjt:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]3.9e-5567.68Show/hide
Query:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---
        MP+GYQ PKFQ FDGKGN KQH+AHFV+TCENAG+RGDQLV+QFVR+LKGNA++WYTDLEP+ IESWEQLE+EFLNRFYSTRR VSMMELTNT+QRK   
Subjt:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---

Query:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS
                                      GMHW LLYILQG+KPR FEELATRAHD ELSIAS
Subjt:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]3.9e-5567.68Show/hide
Query:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---
        MP+GYQ PKFQ FDGKGN KQH+AHFV+TCENAG+RGDQLV+QFVR+LKGNA++WYTDLEP+ IESWEQLE+EFLNRFYSTRR VSMMELTNT+QRK   
Subjt:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---

Query:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS
                                      GMHW LLYILQG+KPR FEELATRAHD ELSIAS
Subjt:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]3.9e-5567.68Show/hide
Query:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---
        MP+GYQ PKFQ FDGKGN KQH+AHFV+TCENAG+RGDQLV+QFVR+LKGNA++WYTDLEP+ IESWEQLE+EFLNRFYSTRR VSMMELTNT+QRK   
Subjt:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---

Query:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS
                                      GMHW LLYILQG+KPR FEELATRAHD ELSIAS
Subjt:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS

TrEMBL top hitse value%identityAlignment
A0A5A7SXL9 Ty3-gypsy retrotransposon protein1.9e-5567.07Show/hide
Query:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---
        MP+GYQ PKFQ FDG+GN KQHIAHFV+TCENAG+RGDQLVKQFVR+LKGNA++WYTDLEP++I++WEQLE EFLNRFYSTRR+VSMMELTNT+QRK   
Subjt:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---

Query:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS
                                      GMHWELLYILQG+KPR FEELATRAHD ELSIA+
Subjt:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS

A0A5A7TYI6 Retrotransposon gag protein4.2e-5567.07Show/hide
Query:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---
        MP+GYQ PKFQ FDGKGN KQHIAHFV+TCENAG+RGDQLV+QFVR+LKGNA++WYTDLEP++I+SWEQLE+EFLNRFYSTRR VSMMELTNT+QRK   
Subjt:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---

Query:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS
                                      GMHW LLYILQG+KPR FEELATRAHD ELSIA+
Subjt:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS

A0A5D3DU00 Retrotransposon gag protein4.2e-5567.07Show/hide
Query:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---
        MP+GYQ PKFQ FDGKGN KQHIAHFV+TCENAG+RGDQLV+QFVR+LKGNA++WYTDLEP++I+SWEQLE+EFLNRFYSTRR VSMMELTNT+QRK   
Subjt:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---

Query:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS
                                      GMHW LLYILQG+KPR FEELATRAHD ELSIA+
Subjt:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS

A0A6J1DYQ8 uncharacterized protein LOC1110258341.3e-5669.51Show/hide
Query:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---
        MP GYQ PKFQHFDGKGN KQHIAHFV+TCENAGTRGDQLVKQFVRTLKGNA+DWYTDLEP+ IESWEQLE+EFLNRFYST+R VSMMELTN+ QRK   
Subjt:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---

Query:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS
                                      GMHWELLYILQ +KPR FEELATRAHD ELSIA+
Subjt:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS

E5GCP6 Ty3-gypsy retrotransposon protein1.9e-5567.07Show/hide
Query:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---
        MP+GYQ PKFQ FDG+GN KQHIAHFV+TCENAG+RGDQLVKQFVR+LKGNA++WYTDLEP++I++WEQLE EFLNRFYSTRR+VSMMELTNT+QRK   
Subjt:  MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRK---

Query:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS
                                      GMHWELLYILQG+KPR FEELATRAHD ELSIA+
Subjt:  ------------------------------GMHWELLYILQGVKPRIFEELATRAHDRELSIAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGTTGGATATCAGTCGCCTAAGTTTCAACATTTCGATGGAAAAGGTAATACCAAACAACATATTGCTCACTTTGTCAAAACTTGTGAGAATGCTGGTACG
AGAGGCGATCAACTGGTGAAGCAGTTTGTCCGAACGTTGAAGGGAAACGCCTATGATTGGTATACCGATCTCGAGCCTAAAATGATCGAGAGTTGGGAACAACTT
GAAAGAGAATTCCTAAATCGCTTCTACAGTACTAGGCGAATTGTCAGCATGATGGAGCTCACCAATACTAGACAACGAAAAGGTATGCATTGGGAACTTCTTTAC
ATCCTTCAAGGTGTAAAACCTCGCATCTTTGAAGAGCTGGCAACTCGTGCTCATGATAGGGAGCTAAGCATTGCTAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGTTGGATATCAGTCGCCTAAGTTTCAACATTTCGATGGAAAAGGTAATACCAAACAACATATTGCTCACTTTGTCAAAACTTGTGAGAATGCTGGTACG
AGAGGCGATCAACTGGTGAAGCAGTTTGTCCGAACGTTGAAGGGAAACGCCTATGATTGGTATACCGATCTCGAGCCTAAAATGATCGAGAGTTGGGAACAACTT
GAAAGAGAATTCCTAAATCGCTTCTACAGTACTAGGCGAATTGTCAGCATGATGGAGCTCACCAATACTAGACAACGAAAAGGTATGCATTGGGAACTTCTTTAC
ATCCTTCAAGGTGTAAAACCTCGCATCTTTGAAGAGCTGGCAACTCGTGCTCATGATAGGGAGCTAAGCATTGCTAGTTAA
Protein sequenceShow/hide protein sequence
MPVGYQSPKFQHFDGKGNTKQHIAHFVKTCENAGTRGDQLVKQFVRTLKGNAYDWYTDLEPKMIESWEQLEREFLNRFYSTRRIVSMMELTNTRQRKGMHWELLY
ILQGVKPRIFEELATRAHDRELSIAS