; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc08g26630 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc08g26630
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotransposable element Tf2
Genome locationchr8:19273249..19275687
RNA-Seq ExpressionMoc08g26630
SyntenyMoc08g26630
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032916.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.8e-0632.77Show/hide
Query:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL----MAPVQERSLTPSSNAPQTVSLMTKQANALPISSSSSSVGNDFDPLVG---IDVN
        +PWI  W F +G  GNFKAL+K+++IKWW+K +YSHL+   +     A +  + +T   +      L+TK  NA+  + + +S   +F+ +V    ++++
Subjt:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL----MAPVQERSLTPSSNAPQTVSLMTKQANALPISSSSSSVGNDFDPLVG---IDVN

Query:  DQS--MTEIASARAVSDQD
        D +  + E AS  +V+D D
Subjt:  DQS--MTEIASARAVSDQD

KAA0032923.1 polyprotein [Cucumis melo var. makuwa]7.9e-0730.47Show/hide
Query:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL------------MAPVQERSLTPSSNAPQT------------------VSLMTKQANA
        +PWI  W F +G  GNFKAL+K++ IKWW+K +YSHL+   +            M   ++ +   + NA  +                  V  ++   + 
Subjt:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL------------MAPVQERSLTPSSNAPQT------------------VSLMTKQANA

Query:  LPISSSSSSVGN----DFDPLVGIDVND
        LP  +S +SV +    D+DP VG+D+ND
Subjt:  LPISSSSSSVGN----DFDPLVGIDVND

KAA0054115.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.0e-0632.77Show/hide
Query:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL----MAPVQERSLTPSSNAPQTVSLMTKQANALPISSSSSSVGNDFDPLVG---IDVN
        +PWI  W F +G  GNFKAL+K+++IKWW+K +YSHL+   +     A +  + +T   +      L+TK  NA+  + + +S+  +F+ +V    ++++
Subjt:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL----MAPVQERSLTPSSNAPQTVSLMTKQANALPISSSSSSVGNDFDPLVG---IDVN

Query:  DQS--MTEIASARAVSDQD
        D +  + E AS  +V+D D
Subjt:  DQS--MTEIASARAVSDQD

KAA0058432.1 polyprotein [Cucumis melo var. makuwa]7.2e-0837.04Show/hide
Query:  WILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENLMAPVQERSLTPSSNAP-------QTVSLMTKQANALPISSSSSSVGN---------DFDP
        WI  W F IG  GNFK L+KA++IKWW+K +YSHL+   +   VQ +  +P  +           V+L   +   L  +SS +SV N         D+DP
Subjt:  WILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENLMAPVQERSLTPSSNAP-------QTVSLMTKQANALPISSSSSSVGN---------DFDP

Query:  LVGIDVND
          G D+ND
Subjt:  LVGIDVND

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.8e-0630.47Show/hide
Query:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL------------MAPVQERSLTPSSNAPQT------------------VSLMTKQANA
        +PWI  W F +G  GNFKAL+K+++IKWW+K +YSHL+   +            M   ++ +   + NA  +                  V  ++   + 
Subjt:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL------------MAPVQERSLTPSSNAPQT------------------VSLMTKQANA

Query:  LPISSSSSSVGN----DFDPLVGIDVND
        LP   S +SV N    D+DP  G+D+ND
Subjt:  LPISSSSSSVGN----DFDPLVGIDVND

TrEMBL top hitse value%identityAlignment
A0A5A7SR64 Polyprotein3.8e-0730.47Show/hide
Query:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL------------MAPVQERSLTPSSNAPQT------------------VSLMTKQANA
        +PWI  W F +G  GNFKAL+K++ IKWW+K +YSHL+   +            M   ++ +   + NA  +                  V  ++   + 
Subjt:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL------------MAPVQERSLTPSSNAPQT------------------VSLMTKQANA

Query:  LPISSSSSSVGN----DFDPLVGIDVND
        LP  +S +SV +    D+DP VG+D+ND
Subjt:  LPISSSSSSVGN----DFDPLVGIDVND

A0A5A7SS94 Retrotransposable element Tf28.6e-0732.77Show/hide
Query:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL----MAPVQERSLTPSSNAPQTVSLMTKQANALPISSSSSSVGNDFDPLVG---IDVN
        +PWI  W F +G  GNFKAL+K+++IKWW+K +YSHL+   +     A +  + +T   +      L+TK  NA+  + + +S   +F+ +V    ++++
Subjt:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL----MAPVQERSLTPSSNAPQTVSLMTKQANALPISSSSSSVGNDFDPLVG---IDVN

Query:  DQS--MTEIASARAVSDQD
        D +  + E AS  +V+D D
Subjt:  DQS--MTEIASARAVSDQD

A0A5A7UK70 Retrotransposable element Tf25.0e-0732.77Show/hide
Query:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL----MAPVQERSLTPSSNAPQTVSLMTKQANALPISSSSSSVGNDFDPLVG---IDVN
        +PWI  W F +G  GNFKAL+K+++IKWW+K +YSHL+   +     A +  + +T   +      L+TK  NA+  + + +S+  +F+ +V    ++++
Subjt:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL----MAPVQERSLTPSSNAPQTVSLMTKQANALPISSSSSSVGNDFDPLVG---IDVN

Query:  DQS--MTEIASARAVSDQD
        D +  + E AS  +V+D D
Subjt:  DQS--MTEIASARAVSDQD

A0A5A7UVN1 Retrotransposable element Tf28.6e-0730.47Show/hide
Query:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL------------MAPVQERSLTPSSNAPQT------------------VSLMTKQANA
        +PWI  W F +G  GNFKAL+K+++IKWW+K +YSHL+   +            M   ++ +   + NA  +                  V  ++   + 
Subjt:  VPWILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENL------------MAPVQERSLTPSSNAPQT------------------VSLMTKQANA

Query:  LPISSSSSSVGN----DFDPLVGIDVND
        LP   S +SV N    D+DP  G+D+ND
Subjt:  LPISSSSSSVGN----DFDPLVGIDVND

A0A5D3BCI3 Polyprotein3.5e-0837.04Show/hide
Query:  WILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENLMAPVQERSLTPSSNAP-------QTVSLMTKQANALPISSSSSSVGN---------DFDP
        WI  W F IG  GNFK L+KA++IKWW+K +YSHL+   +   VQ +  +P  +           V+L   +   L  +SS +SV N         D+DP
Subjt:  WILGWKFNIGKFGNFKALTKAIQIKWWDKLHYSHLQEENLMAPVQERSLTPSSNAP-------QTVSLMTKQANALPISSSSSSVGN---------DFDP

Query:  LVGIDVND
          G D+ND
Subjt:  LVGIDVND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCACACCGCTTGGAAGGCCTCCACGCCTTCGTTCGGTTGCTAGCTACTCTAAAGCTAGTAAAAATCATAAGGGTAAAAAGCTTGATTCTTCGTCAAGA
AAACCGGCTGAGGTTTCATCAAGTGGACCTGCACAAATACCTATGACTGCAAATCTATACTCAATGGACTTCAAGTCTGTCCAATCATCATCCAGATGTTCCCGA
CAAAAGGGAATACGGAACCACATCCTCCAATCCCTTCATCCAGTTCCATGGATTCTAGGTTGGAAATTCAATATAGGAAAATTTGGAAATTTCAAAGCCTTGACT
AAAGCAATACAAATCAAATGGTGGGACAAGTTACACTACAGCCACCTTCAAGAGGAAAATCTTATGGCACCAGTTCAAGAGAGGAGTTTAACTCCCTCATCCAAC
GCGCCACAAACCGTCTCTCTGATGACGAAGCAAGCGAATGCATTACCAATCTCATCATCATCATCGTCAGTTGGCAACGACTTTGATCCTCTCGTCGGGATAGAC
GTCAATGACCAGAGCATGACAGAGATAGCTTCAGCCAGGGCGGTTTCTGACCAAGATCGCAGAAATTCGCATTGTTTACACAAGGTGTCGCATCGTTTGCTTCGG
CAAATTGTCAAGGAAGATCTTTTTGCTTCGACAAGGGGATGTATGGAGGCAAGCTTAGGCGAGGAGCCGTTTTGTAAGTCTGCAGTGATCTTCATCCCTAATCAG
TGCGGAGGAAGCAACTTAGAATCCTTGGATAGTGATCATGCGAATAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCACACCGCTTGGAAGGCCTCCACGCCTTCGTTCGGTTGCTAGCTACTCTAAAGCTAGTAAAAATCATAAGGGTAAAAAGCTTGATTCTTCGTCAAGA
AAACCGGCTGAGGTTTCATCAAGTGGACCTGCACAAATACCTATGACTGCAAATCTATACTCAATGGACTTCAAGTCTGTCCAATCATCATCCAGATGTTCCCGA
CAAAAGGGAATACGGAACCACATCCTCCAATCCCTTCATCCAGTTCCATGGATTCTAGGTTGGAAATTCAATATAGGAAAATTTGGAAATTTCAAAGCCTTGACT
AAAGCAATACAAATCAAATGGTGGGACAAGTTACACTACAGCCACCTTCAAGAGGAAAATCTTATGGCACCAGTTCAAGAGAGGAGTTTAACTCCCTCATCCAAC
GCGCCACAAACCGTCTCTCTGATGACGAAGCAAGCGAATGCATTACCAATCTCATCATCATCATCGTCAGTTGGCAACGACTTTGATCCTCTCGTCGGGATAGAC
GTCAATGACCAGAGCATGACAGAGATAGCTTCAGCCAGGGCGGTTTCTGACCAAGATCGCAGAAATTCGCATTGTTTACACAAGGTGTCGCATCGTTTGCTTCGG
CAAATTGTCAAGGAAGATCTTTTTGCTTCGACAAGGGGATGTATGGAGGCAAGCTTAGGCGAGGAGCCGTTTTGTAAGTCTGCAGTGATCTTCATCCCTAATCAG
TGCGGAGGAAGCAACTTAGAATCCTTGGATAGTGATCATGCGAATAACTGA
Protein sequenceShow/hide protein sequence
MATTPLGRPPRLRSVASYSKASKNHKGKKLDSSSRKPAEVSSSGPAQIPMTANLYSMDFKSVQSSSRCSRQKGIRNHILQSLHPVPWILGWKFNIGKFGNFKALT
KAIQIKWWDKLHYSHLQEENLMAPVQERSLTPSSNAPQTVSLMTKQANALPISSSSSSVGNDFDPLVGIDVNDQSMTEIASARAVSDQDRRNSHCLHKVSHRLLR
QIVKEDLFASTRGCMEASLGEEPFCKSAVIFIPNQCGGSNLESLDSDHANN