CuGenDBv2

Gene ID	Moc08g26770
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr8:19354452..19357121
RNA-Seq Expression	Moc08g26770
Synteny	Moc08g26770
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048602.1 retrotransposon gag protein [Cucumis melo var. makuwa]

2.1e-33

72.22

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Query:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG
        MMELTN++Q KGE V++YINRWRALSLDCKDR TELSAVE+CTQGMHWGL YILQGIKPRTF+ELATRAHDMELSIA+RG       +RTM     +   
Subjt:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG

Query:  EVNDDKKI
        E+ND KKI
Subjt:  EVNDDKKI

KAA0051584.1 retrotransposon gag protein [Cucumis melo var. makuwa]

8.0e-33

66.12

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Query:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG
        MMELTN++Q KGE V++YINRWRALSLDCKDR TELSAVE+CTQGMHWGL YILQGIKPRTF+ELATRAHDMELSIASRG       E      +AKS  
Subjt:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG

Query:  EVNDDKKIHSIVPSCMKRKFS
        +V       S+V +    KFS
Subjt:  EVNDDKKIHSIVPSCMKRKFS

TYK27186.1 retrotransposon gag protein [Cucumis melo var. makuwa]

2.1e-33

72.22

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Query:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG
        MMELTN++Q KGE V++YINRWRALSLDCKDR TELSAVE+CTQGMHWGL YILQGIKPRTF+ELATRAHDMELSIA+RG       +RTM     +   
Subjt:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG

Query:  EVNDDKKI
        E+ND KKI
Subjt:  EVNDDKKI

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]

8.0e-33

63.85

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Query:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG
        MMELTN++Q KGE V++YINRWRALSLDCKDR TELSAVE+CTQGMHWGL YILQGIKPRTF+ELATRAHDMELSIASRG              K     
Subjt:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG

Query:  EVNDDKK----IHSIVPSCMKRKFSLLINT
        EV  DKK       IV S +K   S+++NT
Subjt:  EVNDDKK----IHSIVPSCMKRKFSLLINT

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]

1.8e-32

63.85

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Query:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG
        MMELTN++Q KGE V++YINRWRALSLDCKDR TELSAVE+CTQGMHWGL YILQGIKPRTF+ELATRAHDMELSIASRG              K     
Subjt:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG

Query:  EVNDDKK----IHSIVPSCMKRKFSLLINT
        EV  DKK       IV S  K   S+++NT
Subjt:  EVNDDKK----IHSIVPSCMKRKFSLLINT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7STA5 Ty3-gypsy retrotransposon protein

1.1e-32

62.31

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Query:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG
        MMELTN++Q KGE V++YINRWRALSLDCKDR TELS+VE+CTQGMHWGL YILQGIKPRTF+ELATRAHDMELSIASRG              K     
Subjt:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG

Query:  EVNDDKK----IHSIVPSCMKRKFSLLINT
        EV  DKK       +V S +K   S+++NT
Subjt:  EVNDDKK----IHSIVPSCMKRKFSLLINT

A0A5A7TYI6 Retrotransposon gag protein

1.0e-33

72.22

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Query:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG
        MMELTN++Q KGE V++YINRWRALSLDCKDR TELSAVE+CTQGMHWGL YILQGIKPRTF+ELATRAHDMELSIA+RG       +RTM     +   
Subjt:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG

Query:  EVNDDKKI
        E+ND KKI
Subjt:  EVNDDKKI

A0A5A7U8E4 Retrotransposon gag protein

3.9e-33

66.12

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Query:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG
        MMELTN++Q KGE V++YINRWRALSLDCKDR TELSAVE+CTQGMHWGL YILQGIKPRTF+ELATRAHDMELSIASRG       E      +AKS  
Subjt:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG

Query:  EVNDDKKIHSIVPSCMKRKFS
        +V       S+V +    KFS
Subjt:  EVNDDKKIHSIVPSCMKRKFS

A0A5D3C8N8 Ribonuclease H

1.5e-32

60.77

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Query:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG
        MMELTN++Q KGESV++YINRWRALSL+CKDR TELSAVE+CTQGMHWGL YILQGIKP TF+ELATRAHDMELS ASRG              K     
Subjt:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG

Query:  EVNDDKK----IHSIVPSCMKRKFSLLINT
        E+  DKK    +  +V S +K   S+++NT
Subjt:  EVNDDKK----IHSIVPSCMKRKFSLLINT

A0A5D3DU00 Retrotransposon gag protein

1.0e-33

72.22

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Query:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG
        MMELTN++Q KGE V++YINRWRALSLDCKDR TELSAVE+CTQGMHWGL YILQGIKPRTF+ELATRAHDMELSIA+RG       +RTM     +   
Subjt:  MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFG

Query:  EVNDDKKI
        E+ND KKI
Subjt:  EVNDDKKI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATGGAGCTCACGAACTCCGAACAAATAAAAGGCGAATCGGTTGTCGAATATATCAACCGATGGAGAGCTCTAAGTCTTGATTGCAAAGATAGGCCTACTGAA
CTATCTGCTGTCGAATTATGCACTCAAGGTATGCACTGGGGACTTCATTACATTCTTCAAGGTATAAAACCTCGCACATTTAAAGAGCTAGCAACTCGTGCTCAT
GATATGGAGCTAAGCATTGCTAGTCGAGGAAAAGTGATGGGCGATCAATATGAAAGAACGATGAAGACCGTGAAGGCGAAATCATTTGGTGAAGTGAATGATGAT
AAGAAAATTCACAGCATTGTTCCTTCCTGTATGAAGAGAAAATTCTCCCTTCTCATAAATACAGAAGGTTCTTTAAAAGATCGCTCTAATTCGGATGTGGTATCG
GTTTATTCACCCCTCCTCTCTAGTCGGGCGTCACATGCCCACCAGCTTCTGCCTTGGTTCATCCCCAAACCACATCTTACTGGGAGAAGTTCTGCTCTGATACCA
TCTGTAACGCCCCAGGCCCAGGATTCGGAATCCGGATTCGGCACCTCTATGCCCCGATCGCTCTCATTTGGATGTGGTATCGGTTCATTCATGTACCCCTCCTCT
CTAGTTGGGCGTCACAAAACTGGATCTTCACATGATCGTTGGCGAAGAAGTTACAGTCGTTTGATCGTTGACAAAGAAGGTTTGATCATTGCAGAAGAAGCTGTA
GTTGCATGA

mRNA sequence

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Protein sequence

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MMELTNSEQIKGESVVEYINRWRALSLDCKDRPTELSAVELCTQGMHWGLHYILQGIKPRTFKELATRAHDMELSIASRGKVMGDQYERTMKTVKAKSFGEVNDD
KKIHSIVPSCMKRKFSLLINTEGSLKDRSNSDVVSVYSPLLSSRASHAHQLLPWFIPKPHLTGRSSALIPSVTPQAQDSESGFGTSMPRSLSFGCGIGSFMYPSS
LVGRHKTGSSHDRWRRSYSRLIVDKEGLIIAEEAVVA

Moc08g26770 (gene) of Bitter gourd (OHB3-1) v2 genome